Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_015242 |
| gene name | sec22ba |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 9970942 ~ 9983661 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| sec22ba | Predicted to enable SNAP receptor activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum; and vesicle fusion with Golgi apparatus. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in several cellular components, including Golgi apparatus; endoplasmic reticulum-Golgi intermediate compartment membrane; and melanosome. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in bounding membrane of organelle; endoplasmic reticulum membrane; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in hatching gland; notochord; and polster. Orthologous to human SEC22B (SEC22 homolog B, vesicle trafficking protein). |
| id | name | namespace |
|---|---|---|
| GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | biological_process |
| GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | biological_process |
| GO:0048280 | vesicle fusion with Golgi apparatus | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0015031 | protein transport | biological_process |
| GO:0033116 | endoplasmic reticulum-Golgi intermediate compartment membrane | cellular_component |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0005793 | endoplasmic reticulum-Golgi intermediate compartment | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0042470 | melanosome | cellular_component |
| GO:0000139 | Golgi membrane | cellular_component |
| GO:0012507 | ER to Golgi transport vesicle membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0031201 | SNARE complex | cellular_component |
| GO:0005484 | SNAP receptor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-010724-3 | Predicted to enable SNAP receptor activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum; and vesicle fusion with Golgi apparatus. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in several cellular components, including Golgi apparatus; endoplasmic reticulum-Golgi intermediate compartment membrane; and melanosome. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in bounding membrane of organelle; endoplasmic reticulum membrane; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in hatching gland; notochord; and polster. Orthologous to human SEC22B (SEC22 homolog B, vesicle trafficking protein). |
| ensembl_id | ENSDARG00000030108 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00030575 | False | 924 | mRNA | 0.47 | 6 | 9970942 | 9982960 |
| TCONS_00030576 | False | 1667 | mRNA | 0.39 | 5 | 9973687 | 9983661 |
| TCONS_00030577 | True | 655 | nonsense_mediated_decay | 0.46 | 4 | 9973881 | 9982953 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_015241 | tsen15 | coding | upstream | 13137 | 9946121 ~ 9957805 (+) |
| XLOC_015240 | CR956623.1 | coding | upstream | 29537 | 9918678 ~ 9941405 (+) |
| XLOC_015239 | BX470264.2 | coding | upstream | 95297 | 9875529 ~ 9875645 (+) |
| XLOC_015238 | anxa13l | coding | upstream | 128702 | 9821757 ~ 9842240 (+) |
| XLOC_015237 | pcyt1aa | coding | upstream | 190983 | 9755422 ~ 9779959 (+) |
| XLOC_015243 | slc35a3b | coding | downstream | 6830 | 9990491 ~ 10040264 (+) |
| XLOC_015244 | cmpk | coding | downstream | 80086 | 10063747 ~ 10076929 (+) |
| XLOC_015245 | insl5b | coding | downstream | 144101 | 10127762 ~ 10129061 (+) |
| XLOC_015246 | ahsg2 | coding | downstream | 150684 | 10134345 ~ 10141741 (+) |
| XLOC_015247 | pfn2l | coding | downstream | 163368 | 10147029 ~ 10151839 (+) |
| XLOC_015236 | NA | non-coding | upstream | 313895 | 9651716 ~ 9657047 (+) |
| XLOC_015231 | NA | non-coding | upstream | 640733 | 9132585 ~ 9330209 (+) |
| XLOC_015232 | NA | non-coding | upstream | 652663 | 9316319 ~ 9318279 (+) |
| XLOC_015227 | NA | non-coding | upstream | 1279913 | 8690658 ~ 8691029 (+) |
| XLOC_015249 | FO704816.1 | non-coding | downstream | 222340 | 10206001 ~ 10206118 (+) |
| XLOC_015251 | NA | non-coding | downstream | 301100 | 10284761 ~ 10285629 (+) |
| XLOC_015252 | BX927121.1 | non-coding | downstream | 402818 | 10386479 ~ 10416272 (+) |
| XLOC_015253 | NA | non-coding | downstream | 579838 | 10563499 ~ 10564386 (+) |
| XLOC_015254 | NA | non-coding | downstream | 620852 | 10604513 ~ 10607329 (+) |
