XLOC_015242 (sec22ba)


Basic Information

Item Value
gene id XLOC_015242
gene name sec22ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9970942 ~ 9983661 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030575
TCGCGGCACGTCCAGCTGGAGCCCCGTGCATAAAGGGCCCTTGTGTGGCATCAAAAGAGCTGTGAGTGGTGGCAGGCAATCCAATGAGGCTGAACTAATCGCTCTCAGAGACCGAGGTTAAACACTAAAAAGACAATCGCCAAAATGGTGTTGCAGACGATGATTGTTCGGGTCGCTGACAGTCTTCCGCTTGCTGCGTCAATGCAAGAAGACGAGCAgTCTGGACGAGACTTGCAGAAGTATCAGAGTCAAGCCAAGCAGCTGTGCCGAAAACTGAACGAGCAGAGTCCAGCACGGTGCACTTTAGAAGCGGGGAAAATGTGTTTTCACTATGTCATTGAGAAAGGAGTGTGTTACTTGGCCTTGTGTGAAGCTGGGTTTCCCAAGAAACTGGCGTTTGCCTATCTGGAGGATCTGGAAGGAGAATTCAGCGAGCAGTACGGGGCAAAGGTCCCATCTGTATCACGGCCATACTCTTTTATCGAATTTGACACGTACATACAGAAAACTAAAAAGTCGTACATAGACAGCAGAGCAAGAAGAAATCTGGGCAACATCAATTCAGAATTACACGATGTACAGAGGATCATGGTTGCTAACATAGAGGAAGTGCTTCAGCGGGGAGAAGCATTATCTGCCTTGGATTCCAAAGCAAGTAATCTGTCCAGTCTGTCTAAGAAGTACCGCAGTGATGCCAAATATCTGAACACCCGGTCTACCTACGCTAAAGTGGCTGCCGGCGCAGTCATTATCATCACACTCATCATTTACGTGCGCTTCTGGTGGCTGTGAAATACACGGAACAAATTCAAGCAGAAACTCTCAGGGCcttgctcacaaaaaaaaaaatggttcggACACCAAATAGTCTGTTCTGGCCTTAAAGTTGTGTCTGTTTTGACATACTGAATGCAGGTTAGTGAG
>TCONS_00030576
AATGCGACGGCGGAACTTTGGGAATGCAGAAGCCGGAAAGAATTTAAGGTAACACTCCCTCTTCCGGCCACCTCATCTGAACTCTGCTGTCAGTTCAAATGTGTCACTTTCTGCCAGTCACTCAAATAATCAATCGCCTCACTTTAAAATAGACCGAGGTTAAACACTAAAAAGACAATCGCCAAAATGGTGTTGCAGACGATGATTGTTCGGGTCGCTGACAGTCTTCCGCTTGCTGCGTCAATGCAAGAAGACGAGCAgTCTGGACGAGACTTGCAGAAGTATCAGAGTCAAGCCAAGCAGCTGTGCCGAAAACTGAACGAGCAGAGTCCAGCACGGTGCACTTTAGAAGCGGGGAAAATGTGTTTTCACTATGTCATTGAGAAAGGAGTGTGTTACTTGGCCTTGTGTGAAGCTGGGTTTCCCAAGAAACTGGCGTTTGCCTATCTGGAGGATCTGGAAGGAGAATTCAGCGAGCAGTACGGGGCAAAGGTCCCATCTGTATCACGGCCATACTCTTTTATCGAATTTGACACGTACATACAGAAAACTAAAAAGTCGTACATAGACAGCAGAGCAAGAAGAAATCTGGGCAACATCAATTCAGAATTACACGATGTACAGAGGATCATGGTTGCTAACATAGAGGAAGTGCTTCAGCGGGGAGAAGCATTATCTGCCTTGGATTCCAAAGCAAGTAATCTGTCCAGTCTGTCTAAGAAGTACCGCAGTGATGCCAAATATCTGAACACCCGGTCTACCTACGCTAAAGTGGCTGCCGGCGCAGTCATTATCATCACACTCATCATTTACGTGCGCTTCTGGTGGCTGTGAAATACACGGAACAAATTCAAGCAGAAACTCTCAGGGCcttgctcacaaaaaaaaaaatggttcggACACCAAATAGTCTGTTCTGGCCTTAAAGTTGTGTCTGTTTTGACATACTGAATGCAGGTTAGTGAGGGTTTGTAATGATGATGTCCTTCCTTATTTATAACATGTCAGTGGAAGGAGTTAAAGATGCGTGTGTTGCCTTGTATGTCTCCTGTATGTTGGAAACAGAGCTATGCAAATTATATTTGGTATACCTTGTGGGTTAAGTTGtgatttatttgtaaaatgtgaAGGTAGTTTTTTAGAAACAACTaaattctggaaaaaaaagttttgtttacaAATGATGCACAATAAcaaaaatcaaatacatttactcactttttcaagAATGATAAATGCTCGCTTCTGTGGAGCAGGAAATAAATATGTATCTGTGCATTATTAAAGAATCACAAGTGAATTTCTGGATGAAATCCAAATTTTCATTTCACTTGGAGATTTAGGCCATGAGGTCAAAGTCATCgcgctgaaagaaaaaaaaaaattgtaacttTAACAAACAAGCGATTAGTTCAAATGTTTTGTATTCATTTAACCAGCATCAATGTGATCATAGAAACGGCAGCATTCATTCAAACTGggagaaatgtgttaaataaacgTGAAAATATTTTCCTGAATGCATTTCATTATTAAACGTTTTGCATACACTGATCAAAATTGgaggtattttatttaaaacatcggctatatatttttgttaaccGATTAAATTGTAAACTATTTGACTAAAATATTCAATAAAGAATATTCATATTTCTAATTAA
>TCONS_00030577
GCAGACGATGATTGTTCGGGTCGCTGACAGTCTTCCGCTTGCTGCGTCAATGCAAGAAGACGAGCAgCTATGTCATTGAGAAAGGAGTGTGTTACTTGGCCTTGTGTGAAGCTGGGTTTCCCAAGAAACTGGCGTTTGCCTATCTGGAGGATCTGGAAGGAGAATTCAGCGAGCAGTACGGGGCAAAGGTCCCATCTGTATCACGGCCATACTCTTTTATCGAATTTGACACGTACATACAGAAAACTAAAAAGTCGTACATAGACAGCAGAGCAAGAAGAAATCTGGGCAACATCAATTCAGAATTACACGATGTACAGAGGATCATGGTTGCTAACATAGAGGAAGTGCTTCAGCGGGGAGAAGCATTATCTGCCTTGGATTCCAAAGCAAGTAATCTGTCCAGTCTGTCTAAGAAGTACCGCAGTGATGCCAAATATCTGAACACCCGGTCTACCTACGCTAAAGTGGCTGCCGGCGCAGTCATTATCATCACACTCATCATTTACGTGCGCTTCTGGTGGCTGTGAAATACACGGAACAAATTCAAGCAGAAACTCTCAGGGCcttgctcacaaaaaaaaaaatggttcggACACCAAATAGTCTGTTCTGGCCTTAAAGTTGTGTCTGTTTTGACATACTGAATGCAGGT

Function

symbol description
sec22ba Predicted to enable SNAP receptor activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum; and vesicle fusion with Golgi apparatus. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in several cellular components, including Golgi apparatus; endoplasmic reticulum-Golgi intermediate compartment membrane; and melanosome. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in bounding membrane of organelle; endoplasmic reticulum membrane; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in hatching gland; notochord; and polster. Orthologous to human SEC22B (SEC22 homolog B, vesicle trafficking protein).

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0048280 vesicle fusion with Golgi apparatus biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0042470 melanosome cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0012507 ER to Golgi transport vesicle membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010724-3 Predicted to enable SNAP receptor activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum; and vesicle fusion with Golgi apparatus. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in several cellular components, including Golgi apparatus; endoplasmic reticulum-Golgi intermediate compartment membrane; and melanosome. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in bounding membrane of organelle; endoplasmic reticulum membrane; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in hatching gland; notochord; and polster. Orthologous to human SEC22B (SEC22 homolog B, vesicle trafficking protein).

Ensembl:

ensembl_id ENSDARG00000030108

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030575 False 924 mRNA 0.47 6 9970942 9982960
TCONS_00030576 False 1667 mRNA 0.39 5 9973687 9983661
TCONS_00030577 True 655 nonsense_mediated_decay 0.46 4 9973881 9982953

Neighbor

gene id symbol gene type direction distance location
XLOC_015241 tsen15 coding upstream 13137 9946121 ~ 9957805 (+)
XLOC_015240 CR956623.1 coding upstream 29537 9918678 ~ 9941405 (+)
XLOC_015239 BX470264.2 coding upstream 95297 9875529 ~ 9875645 (+)
XLOC_015238 anxa13l coding upstream 128702 9821757 ~ 9842240 (+)
XLOC_015237 pcyt1aa coding upstream 190983 9755422 ~ 9779959 (+)
XLOC_015243 slc35a3b coding downstream 6830 9990491 ~ 10040264 (+)
XLOC_015244 cmpk coding downstream 80086 10063747 ~ 10076929 (+)
XLOC_015245 insl5b coding downstream 144101 10127762 ~ 10129061 (+)
XLOC_015246 ahsg2 coding downstream 150684 10134345 ~ 10141741 (+)
XLOC_015247 pfn2l coding downstream 163368 10147029 ~ 10151839 (+)
XLOC_015236 NA non-coding upstream 313895 9651716 ~ 9657047 (+)
XLOC_015231 NA non-coding upstream 640733 9132585 ~ 9330209 (+)
XLOC_015232 NA non-coding upstream 652663 9316319 ~ 9318279 (+)
XLOC_015227 NA non-coding upstream 1279913 8690658 ~ 8691029 (+)
XLOC_015249 FO704816.1 non-coding downstream 222340 10206001 ~ 10206118 (+)
XLOC_015251 NA non-coding downstream 301100 10284761 ~ 10285629 (+)
XLOC_015252 BX927121.1 non-coding downstream 402818 10386479 ~ 10416272 (+)
XLOC_015253 NA non-coding downstream 579838 10563499 ~ 10564386 (+)
XLOC_015254 NA non-coding downstream 620852 10604513 ~ 10607329 (+)

Expression


Co-expression Network