XLOC_015243 (slc35a3b)


Basic Information

Item Value
gene id XLOC_015243
gene name slc35a3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9990491 ~ 10040264 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030578
AAAGGAAGTGAATGTTTATAAGAAATGGCGATCATATCCATCCATTGGACGGCGTGTGTGAGCCTCGAACAGACTAAACAGGGGCACTCGTCCCTGTCCTCTGTCTCTGGCTCAGCAGAGGCCTCCAGTATCTCCACCTCATCCCGACTGAAGTATGCCTCTCTGGGGGTGCTGGTGTTCCAGACCACCTCCTTGGTGCTGACAATGCGTTATTCCCGTACCTTGCACACAGAAGAACCCCTCTACTTGGCATCATCTGCTGTGGTGTGTGCTGAACTTCTTAAGATTGTTGCTTGCATTCTGCTTGTCTTCAGAGATCACAGTTTCAGTGTTCGTTCACTGAATCTGGTGTTGAAGGAGGAAATAATCAACAGACCTCTGTTAACTCTGAAGCTGGCAATTCCCTCAGGAATCTACACCCTGCAAAACAACCTTCTCTACGTGGCTCTGTCAAACCTAGACGCAGCTACTTACCAGGTCACGTATCAGCTGAAAATTCTCACTACAGCGCTGTTCTCTGTGTCCATGCTGGGCAAAAGACTTGGCATTTACCAGTGGCTTTCACTAGTCATTCTAATGTTTGGCATTGCTCTTGTCCAGTGGCCAACTGAAGTCTCATCGAGCACCGGTGAAAAAGATTTGACCGCCAGTTCTCAGCTGATTGGACTGCTGGCTGTGCTTGTGGCCTGCTTCTCCAGTGGATTCGCtggtgtttattttgaaaagatCCTCAAAGAGAGCAAGCAGAGTGTCTGGGTCCGCAATATTCAGCTAGGTTTATTCGGACTTGTTTTTGGATTTGGAGGAGTGTTTACATACGATAGAGAAAGAGTGCTGGAGAACGGACTCTTTCAAGGTTATAACAATGTGACATGGTCTGTGGTGGCTCTTCAGGCTTTAGGTGGGTTGGTCATTGCAGCTGTCATCAAGTATGCAGATAACATCCTGAAGGGCTTCGCCACATCCATCTCAATCATTCTGTCCACCCTCATCTCATATTTCTTATTGGACGATTTCGACCCGACTAGTGTGTTCTTCCTGGGTGCGATGCTGGTCATCGCCGCTACATTTCTCTACGGGTGTGAGAGGACACCTGCCATCTGCACTAGTAAAGTATAGAAGACTGGACACAGGAGGATCAATTAAACAAGTGTGCAAGGATGCTTTGCTTGAGGTGTTGTTTAGGACAAAAGAACTAATGACATTTGGAGAATGCGTTTAGAAGGCAGCACAGAAAAACAAATGAACCTAATATTACTGCTGTCCAAAACCTTGCATCACAAGCAGACAAAGGAGGCACATTCCCATCTTAGGGCCGGGACACACTGAGATAAGGCCAAATAACTAGTTCAGATGAAACCAACTGTGTTGTTGGCTTGTGTTTGGTGTCGTCTGGACCAAAATGCTTCATGTGAACACCAAACATACGACAGCCGACTGAAACGAGAGTTTATTCTGTGCCTGTGAGAGTGAACACGGCTTTCTGCGTTCGTCTGTTCTCTCATTCCTCAAACGGAAACCAGAAGATGAAATGTGCATAATGTAAATGCGCAAACTTGCCAAAAAATCGAATAATCCTTAACGTTTGCAAAA
>TCONS_00030579
GGCagattttggaatttttttttttctgttctgtctCTGTTATTATTATTCCATACGTTAATATAACTGAATAGTCTCATGTGTTTGATATTTCAGCTAACGTTGTGTTAATGAAGCTGTATTTTTACAACGCAGAGCAGAAATTTGGTAGAGACTGCATATCATATTAACGGGCAGCGTTGTCTGacaagagaagcaaaaattaTGCAAGTGGTGATTCGACGCCGTGACGCAACGTATATGCTAATTAGCGCGTGACATCATGTAGAGCCATTTAGCAACTTTTCGAGCAGGTATTTAGCTACTTTACGTGGAAGGCTTTTGGAAACGTTGCAAAGACAGCAATGGCACCGATAAAATGAGTTTAACTGGGACTAAACAGGGGCACTCGTCCCTGTCCTCTGTCTCTGGCTCAGCAGAGGCCTCCAGTATCTCCACCTCATCCCGACTGAAGTATGCCTCTCTGGGGGTGCTGGTGTTCCAGACCACCTCCTTGGTGCTGACAATGCGTTATTCCCGTACCTTGCACACAGAAGAACCCCTCTACTTGGCATCATCTGCTGTGGTGTGTGCTGAACTTCTTAAGATTGTTGCTTGCATTCTGCTTGTCTTCAGAGATCACAGTTTCAGTGTTCGTTCACTGAATCTGGTGTTGAAGGAGGAAATAATCAACAGACCTCTGTTAACTCTGAAGCTGGCAATTCCCTCAGGAATCTACACCCTGCAAAACAACCTTCTCTACGTGGCTCTGTCAAACCTAGACGCAGCTACTTACCAGGTCACGTATCAGCTGAAAATTCTCACTACAGCGCTGTTCTCTGTGTCCATGCTGGGCAAAAGACTTGGCATTTACCAGTGGCTTTCACTAGTCATTCTAATGTTTGGCATTGCTCTTGTCCAGTGGCCAACTGAAGTCTCATCGAGCACCGGTGAAAAAGATTTGACCGCCAGTTCTCAGCTGATTGGACTGCTGGCTGTGCTTGTGGCCTGCTTCTCCAGTGGATTCGCtggtgtttattttgaaaagatCCTCAAAGAGAGCAAGCAGAGTGTCTGGGTCCGCAATATTCAGCTAGGTTTATTCGGACTTGTTTTTGGATTTGGAGGAGTGTTTACATACGATAGAGAAAGAGTGCTGGAGAACGGACTCTTTCAAGGTTATAACAATGTGACATGGTCTGTGGTGGCTCTTCAGGCTTTAGGTGGGTTGGTCATTGCAGCTGTCATCAAGTATGCAGATAACATCCTGAAGGGCTTCGCCACATCCATCTCAATCATTCTGTCCACCCTCATCTCATATTTCTTATTGGACGATTTCGACCCGACTAGTGTGTTCTTCCTGGGTGCGATGCTGGTCATCGCCGCTACATTTCTCTACGGGTGTGAGAGGACACCTGCCATCTGCACTAGTAAAGTATAG
>TCONS_00030580
TTAGCAACTTTTCGAGCAGGTATTTAGCTACTTTACGTGGAAGGCTTTTGGAAACGTTGCAAAGACAGCAATGGCACCGATAAAATGAGTTTAACTGGGACTAAACAGGGGCACTCGTCCCTGTCCTCTGTCTCTGGCTCAGCAGAGGCCTCCAGTATCTCCACCTCATCCCGACTGAAGTATGCCTCTCTGGGGGTGCTGGTGTTCCAGACCACCTCCTTGGTGCTGACAATGCGTTATTCCCGTACCTTGCACACAGAAGAACCCCTCTACTTGGCATCATCTGCTGTGGTGTGTGCTGAACTTCTTAAGATTGTTGCTTGCATTCTGCTTGTCTTCAGAGATCACAGTTTCAGTGTTCGTTCACTGAATCTGGTGTTGAAGGAGGAAATAATCAACAGACCTCTGTTAACTCTGAAGCTGGCAATTCCCTCAGGAATCTACACCCTGCAAAACAACCTTCTCTACGTGGCTCTGTCAAACCTAGACGCAGCTACTTACCAGGTCACGTATCAGCTGAAAATTCTCACTACAGCGCTGTTCTCTGTGTCCATGCTGGGCAAAAGACTTGGCATTTACCAGTGGCTTTCACTAGTCATTCTAATGTTTGGCATTGCTCTTGTCCAGTGGCCAACTGAAGTCTCATCGAGCACCGGTGAAAAAGATTTGACCGCCAGTTCTCAGCTGATTGGACTGCTGGCTGTGCTTGTGGCCTGCTTCTCCAGTGGATTCGCtggtgtttattttgaaaagatCCTCAAAGAGAGCAAGCAGAGTGTCTGGGTCCGCAATATTCAGCTAGGT

Function

symbol description
slc35a3b Predicted to enable UDP-galactose transmembrane transporter activity. Predicted to act upstream of or within carbohydrate transport and pyrimidine nucleotide-sugar transmembrane transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Is expressed in axis. Orthologous to human SLC35A3 (solute carrier family 35 member A3).

GO:

id name namespace
GO:0090481 pyrimidine nucleotide-sugar transmembrane transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0030173 integral component of Golgi membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity molecular_function
GO:0005459 UDP-galactose transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-460 Predicted to enable UDP-galactose transmembrane transporter activity. Predicted to act upstream of or within carbohydrate transport and pyrimidine nucleotide-sugar transmembrane transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Is expressed in axis. Orthologous to human SLC35A3 (solute carrier family 35 member A3).

Ensembl:

ensembl_id ENSDARG00000020981

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030578 False 1593 mRNA 0.46 8 9990491 10040264
TCONS_00030579 False 1420 mRNA 0.46 8 10006839 10039790
TCONS_00030580 True 804 mRNA 0.48 5 10007113 10028424

Neighbor

gene id symbol gene type direction distance location
XLOC_015242 sec22ba coding upstream 6830 9970942 ~ 9983661 (+)
XLOC_015241 tsen15 coding upstream 32686 9946121 ~ 9957805 (+)
XLOC_015240 CR956623.1 coding upstream 49086 9918678 ~ 9941405 (+)
XLOC_015239 BX470264.2 coding upstream 114846 9875529 ~ 9875645 (+)
XLOC_015238 anxa13l coding upstream 148251 9821757 ~ 9842240 (+)
XLOC_015244 cmpk coding downstream 23483 10063747 ~ 10076929 (+)
XLOC_015245 insl5b coding downstream 87498 10127762 ~ 10129061 (+)
XLOC_015246 ahsg2 coding downstream 94081 10134345 ~ 10141741 (+)
XLOC_015247 pfn2l coding downstream 106765 10147029 ~ 10151839 (+)
XLOC_015248 nsun4 coding downstream 120220 10160484 ~ 10169433 (+)
XLOC_015236 NA non-coding upstream 333444 9651716 ~ 9657047 (+)
XLOC_015231 NA non-coding upstream 660282 9132585 ~ 9330209 (+)
XLOC_015232 NA non-coding upstream 672212 9316319 ~ 9318279 (+)
XLOC_015227 NA non-coding upstream 1299462 8690658 ~ 8691029 (+)
XLOC_015249 FO704816.1 non-coding downstream 165737 10206001 ~ 10206118 (+)
XLOC_015251 NA non-coding downstream 244497 10284761 ~ 10285629 (+)
XLOC_015252 BX927121.1 non-coding downstream 346215 10386479 ~ 10416272 (+)
XLOC_015253 NA non-coding downstream 523235 10563499 ~ 10564386 (+)
XLOC_015254 NA non-coding downstream 564249 10604513 ~ 10607329 (+)

Expression


Co-expression Network