XLOC_015244 (cmpk)


Basic Information

Item Value
gene id XLOC_015244
gene name cmpk
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10063747 ~ 10076929 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030581
GCGACTCTTCTCCTCTTTGATTGGCTGGCTGTCGGAAAAGCTTCCACGCGTTTTGCACAGGTTGAGAGTGATAATGAAGCCGCAAGTTGTGTTTGTTTTGGGCGGGCCTGGCGCGGGGAAAGGAACACAATGCGCGAGAATTGTGGAGAACTACAGTTACACTCACCTGTCCGCTGGAGATCTCCTGAGAGAGGAGCGCAGCCGCACCGACTCAGAGTTTGGCCAGCTTATTGACAGCTACATCAAAGAAGGGAAGATAGTTCCTGTTCAAATCACCATCAACTTACTGAGGAAGGCAATGGAAGAGACTATGAAAGCTGATGAGAAGAAGTTCCGCTTTCTTATCGATGGTTTCCCACGTAACCAAGACAACCTGCAGGGCTGGAATACTGAGATGGATGGGAAGGCAGATGTCAAGTTTGTTCTTTTCTTTGACTGCAGCAATGAGGTATGCATTGACAGATGTTTAGAGCGGGGAAAGAGCAGCGGTCGCACTGATGATAACAGAGAAAGTTTAGAGAAAAGGATCCAGACGTACCTGCAGTCCACACGGCCCATTATAGAGCTGTACGAGAAGCAAGGAAAAGTGCAAAGGATTGATGCCTCCCGATCTGTGGATGAGGTGTTTGCAGATGTCAAGAACATTCTGGAGAAAGACGACTAAACTTCAACAAACCAAAATCCTTGAAAAGGAAGGCGTCTGTTCACTCGTCGGCAGTGCTATGCCTTCTACATGTAtcaatttac
>TCONS_00030582
GATTGGCTGGTACGTATACGGCGGAAGTGGAATCGGCCCCGGCGCACTTCCCTGACACGCATCAACCGGTCATTCAACCAGCTCCCTAGCCGACTCCCAGGGGTCGATGGTCATTCATTGAGTCAAACTATCGCTTATCAGAACGGTTTATGATTGTGGGTTTGCTTCACAGGCTGTCGGAAAAGCTTCCACGCGTTTTGCACAGGTTGAGAGTGATAATGAAGCCGCAAGTTGTGTTTGTTTTGGGCGGGCCTGGCGCGGGGAAAGGAACACAATGCGCGAGAATTGTGGAGAACTACAGTTACACTCACCTGTCCGCTGGAGATCTCCTGAGAGAGGAGCGCAGCCGCACCGACTCAGAGTTTGGCCAGCTTATTGACAGCTACATCAAAGAAGGGAAGATAGTTCCTGTTCAAATCACCATCAACTTACTGAGGAAGGCAATGGAAGAGACTATGAAAGCTGATGAGAAGAAGTTCCGCTTTCTTATCGATGGTTTCCCACGTAACCAAGACAACCTGCAGGGCTGGAATACTGAGATGGATGGGAAGGCAGATGTCAAGTTTGTTCTTTTCTTTGACTGCAGCAATGAGGTATGCATTGACAGATGTTTAGAGCGGGGAAAGAGCAGCGGTCGCACTGATGATAACAGAGAAAGTTTAGAGAAAAGGATCCAGACGTACCTGCAGTCCACACGGCCCATTATAGAGCTGTACGAGAAGCAAGGAAAAGTGCAAAGGATTGATGCCTCCCGATCTGTGGATGAGGTGTTTGCAGATGTCAAGAACATTCTGGAGAAAGACGACTAAACTTCAACAAACCAAAATCCTTGAAAAGGAAGGCGTCTGTTCACTCGTCGGCAGTGCTATGCCTTCTACATGTAtcaatttacacatttttactcATGCGACAGTGAAATAGGGTTTTTTAGACGTAAGAGTGTGTGCTCATATCCGTGTTTGTAAGTCTGAAAGGAAAACGCTTTGTTGTTGAGCAAACAGTGCATATTTGCTCAGCATTACACTGAAGAGGAACAAATATTTCAGCAGAGAACTAGGCAAGCTTGAGCAATAACATTCGAGGCACTTGTACAGAAACACATTATGCTGATATTTCATTATCACACGCGAGAGATGTTTAGAAACGCATCAAGCCCTGCGTTTTGATTGGTTTCTGCACTTAAGTAGTGAGCAATTCTACGTGACCAACAGATTCCCAGgcctttttttcttaaatgttgtATCTGCTCATGTTTTTCCTCACTGTTTTCCATAGTAATCCACAGCAGGCTCTGAGGACCTATTGCTGGCCGCTCAACAACAGAGAAGTGTTTTAGCTGTATGATTGTTGTTTTATCGTATTTTGCGTGCTAGATTCCAAACACGTGTCATCTTTGCTCAGGCAGTTGATTTTACGATGTGGGAACAGGGGctcatgcttttatttttggtTGTCTCGGCATCCTTGGGGTTGTTTGTGAATGAACCGAATTTGTCGTATTGATGTGACGATTCAGTCTGTGTTCAGACTGTGTCCACAAATAACATAAGAAATATCAAGGATGACAGAAAAATAAACGTTCTGATTTGGAATGTC
>TCONS_00030583
TGGAATCGGCCCCGGCGCACTTCCCTGACACGCATCAACCGGCTGTCGGAAAAGCTTCCACGCGTTTTGCACAGGTTGAGAGTGATAATGAAGCCGCAAGTTGTGTTTGTTTTGGGCGGGCCTGGCGCGGGGAAAGGAACACAATGCGCGAGAATTGTGGAGAACTACAGTTACACTCACCTGTCCGCTGGAGATCTCCTGAGAGAGGAGCGCAGCCGCACCGACTCAGAGTTTGGCCAGCTTATTGACAGCTACATCAAAGAAGGGAAGATAGTTCCTGTTCAAATCACCATCAACTTACTGAGGAAGGCAATGGAAGAGACTATGAAAGCTGATGAGAAGAAGTTCCGCTTTCTTATCGATGGTTTCCCACGTAACCAAGACAACCTGCAGGGCTGGAATACTGAGATGGATGGGAAGGCAGATGTCAAGTTTGTTCTTTTCTTTGACTGCAGCAATGAGGTATGCATTGACAGATGTTTAGAGCGGGGAAAGAGCAGCGGTCGCACTGATGATAACAGAGAAAGTTTAGAGAAAAGGATCCAGACGTACCTGCAGTCCACACGGCCCATTATAGAGCTGTACGAGAAGCAAGGAAAAGTGCAAAGGATTGATGCCTCCCGATCTGTGGATGAGGTGTTTGCAGATGTCAAGAACATTCTGGAGAAAGACGACTAAACTTCAACAAACCAAAATCCTTGAAAAGGAAGGCGTCTGTTCACTCGTCGGCAGTGCTATGCCTTCTACATGTAtcaatttac

Function

symbol description
cmpk Predicted to enable UMP kinase activity; cytidylate kinase activity; and nucleoside diphosphate kinase activity. Predicted to be involved in nucleoside phosphate metabolic process. Predicted to act upstream of or within 'de novo' pyrimidine nucleobase biosynthetic process; phosphorylation; and pyrimidine nucleotide biosynthetic process. Predicted to be active in cytoplasm and nucleus. Is expressed in neural plate and notochord. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human CMPK1 (cytidine/uridine monophosphate kinase 1).

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process biological_process
GO:0006221 pyrimidine nucleotide biosynthetic process biological_process
GO:0006225 UDP biosynthetic process biological_process
GO:0046705 CDP biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0009041 uridylate kinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0033862 UMP kinase activity molecular_function
GO:0004127 cytidylate kinase activity molecular_function
GO:0019205 nucleobase-containing compound kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2113 Predicted to enable UMP kinase activity; cytidylate kinase activity; and nucleoside diphosphate kinase activity. Predicted to be involved in nucleoside phosphate metabolic process. Predicted to act upstream of or within 'de novo' pyrimidine nucleobase biosynthetic process; phosphorylation; and pyrimidine nucleotide biosynthetic process. Predicted to be active in cytoplasm and nucleus. Is expressed in neural plate and notochord. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human CMPK1 (cytidine/uridine monophosphate kinase 1).

Ensembl:

ensembl_id ENSDARG00000019924

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030581 False 747 mRNA 0.48 7 10063747 10076225
TCONS_00030582 False 1596 mRNA 0.45 6 10063765 10076929
TCONS_00030583 True 761 mRNA 0.48 7 10063792 10076225
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_015243 slc35a3b coding upstream 23483 9990491 ~ 10040264 (+)
XLOC_015242 sec22ba coding upstream 80086 9970942 ~ 9983661 (+)
XLOC_015241 tsen15 coding upstream 105942 9946121 ~ 9957805 (+)
XLOC_015240 CR956623.1 coding upstream 122342 9918678 ~ 9941405 (+)
XLOC_015239 BX470264.2 coding upstream 188102 9875529 ~ 9875645 (+)
XLOC_015245 insl5b coding downstream 50833 10127762 ~ 10129061 (+)
XLOC_015246 ahsg2 coding downstream 57416 10134345 ~ 10141741 (+)
XLOC_015247 pfn2l coding downstream 70100 10147029 ~ 10151839 (+)
XLOC_015248 nsun4 coding downstream 83555 10160484 ~ 10169433 (+)
XLOC_015249 FO704816.1 coding downstream 129072 10206001 ~ 10206118 (+)
XLOC_015236 NA non-coding upstream 406700 9651716 ~ 9657047 (+)
XLOC_015231 NA non-coding upstream 733538 9132585 ~ 9330209 (+)
XLOC_015232 NA non-coding upstream 745468 9316319 ~ 9318279 (+)
XLOC_015227 NA non-coding upstream 1372718 8690658 ~ 8691029 (+)
XLOC_015251 NA non-coding downstream 207832 10284761 ~ 10285629 (+)
XLOC_015252 BX927121.1 non-coding downstream 309550 10386479 ~ 10416272 (+)
XLOC_015253 NA non-coding downstream 486570 10563499 ~ 10564386 (+)
XLOC_015254 NA non-coding downstream 527584 10604513 ~ 10607329 (+)

Expression

Expression of XLOC_015244(cmpk) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Expression of XLOC_015244(cmpk) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network