XLOC_015246 (ahsg2)


Basic Information

Item Value
gene id XLOC_015246
gene name ahsg2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10134345 ~ 10141741 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030585
CTCTCAAATTGCACAGTTGCATTTACTTTGGCACTCAAAGAGGTTCACTGGTGTCATTTACATAACAGACATCAGAGTGTCTTTACATTGACCATTTAGTCATGACTGAAGTAcagcacacatatatatatattcaacaaaCAAAGCTTCATTCACTTCATTCTGTACATTCGCTTCAGGAGTACAGGTTCTTGCTGTTCAGCATGCAACTTTGGGCTACAGTTTCTGTTCTTGGGCTCCTGATAACGGGTTCCTGGGCGCAGGGGGTACAGACCACCGTCAACTTGGCTGAATGTGATTCTCCAGAGGCTGAAGCAGCAGCTCTTGCAGCACAAGATTACCTCAACGCTCAGCACACCCATGGTTACAAATACATCCTGAATCGTATTGAGGGCAACAAGGTCATCAGCAGGCCCAATCATGAAGACACGTATCTTATGGAGTTGGATTTTCTGGAAACTACGTGTCACGTCTTGGATCCAACACCAGTGAGCTTGTGCCCAGTCAGACAACAGCGCAGTACGGCAGTTGAGGCAGATTGTGATTTTGCTGTGACTAAAGGCCTGTCAATTGTGGCATTCAAGTGTAAAACTGAGATTGaaacaGACGATGATTGTCTAGGCTGTCCTCACCTCCTGCCTTTAAATGACACAGATGGACTGCAACTCATTGAAGCCTCTTTAGATAGTTTTAATCAAAACAACACACTAAAGACAAAGTTTGCACTCTTTGAAATTGGACGAATGACATCTCAGATTGTCAGTGGAGTGCCTCAGTACTTTGCAGAATATGCCATTATTGGGACAAACTGCTCAAGTTATGTTGATGATTCATGCATCCCTCAGAATCACACTGTTGCTatCCATGGCCTATGTCTAGCTGAAGGTTCAGCCGGTCTGATTGATGTTGACTGCAAAATCTTCAACCCTACCCAAACTGTGCACACAGAAAGCAACAATGCCACAATGCGAGTCCAGCAACTACTGCACGCCCACACTTTTGGACCTCAGCACAACCCCACCGTTCATGGCCTCAGACATCACAAGCTGACAGCACTCCATGACCCTGCACAAAGTGGTTTGATCTCTGCAGAATCCACTGAATCAGCAGAGGTAGTAGCTGTGCTGCCACAGGAAGCCCATGTTGTAAAGCGTGAGGTCGCTGCCCCAGAAAAGCCAGCTGTAGAtgcaaaagtagaaaaaacacccATTCTTGTAGACCCGATTGCTCTCAGCTGTCCaggaaaaaagaaacatttcTAATTTGGTCTAATATCATGAAACCACAAACATAGATGTATAGGCCTGAATATAGTTGACCGATGAGTTCCGAGATCAGCTATCAAACTCATGACCATAGCTGGTAAGCAGTAAGTGTTTTATGACAAAGTAGCTACATGTATAAACAACACTGGCCGGCCATATTTAGGAAGCAGTTATGGCTTTGCCTATTGTATTCCATGGTGCTGTAATAAAATGCTTACCTTGA

Function

symbol description
ahsg2 Predicted to enable endopeptidase inhibitor activity. Predicted to be involved in negative regulation of endopeptidase activity. Predicted to be located in extracellular space and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular region. Human ortholog(s) of this gene implicated in alopecia-mental retardation syndrome 1; coronary artery disease; and type 2 diabetes mellitus. Orthologous to human AHSG (alpha 2-HS glycoprotein).

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004866 endopeptidase inhibitor activity molecular_function
GO:0004869 cysteine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1133 Predicted to enable endopeptidase inhibitor activity. Predicted to be involved in negative regulation of endopeptidase activity. Predicted to be located in extracellular space and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular region. Human ortholog(s) of this gene implicated in alopecia-mental retardation syndrome 1; coronary artery disease; and type 2 diabetes mellitus. Orthologous to human AHSG (alpha 2-HS glycoprotein).

Ensembl:

ensembl_id ENSDARG00000069293

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030585 True 1488 mRNA 0.44 7 10134345 10141741
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_015245 insl5b coding upstream 5284 10127762 ~ 10129061 (+)
XLOC_015244 cmpk coding upstream 57416 10063747 ~ 10076929 (+)
XLOC_015243 slc35a3b coding upstream 94081 9990491 ~ 10040264 (+)
XLOC_015242 sec22ba coding upstream 150684 9970942 ~ 9983661 (+)
XLOC_015241 tsen15 coding upstream 176540 9946121 ~ 9957805 (+)
XLOC_015247 pfn2l coding downstream 5288 10147029 ~ 10151839 (+)
XLOC_015248 nsun4 coding downstream 18743 10160484 ~ 10169433 (+)
XLOC_015249 FO704816.1 coding downstream 64260 10206001 ~ 10206118 (+)
XLOC_015250 gadd45aa coding downstream 138904 10280645 ~ 10284572 (+)
XLOC_015251 NA coding downstream 143020 10284761 ~ 10285629 (+)
XLOC_015239 BX470264.2 non-coding upstream 258700 9875529 ~ 9875645 (+)
XLOC_015236 NA non-coding upstream 477298 9651716 ~ 9657047 (+)
XLOC_015231 NA non-coding upstream 804136 9132585 ~ 9330209 (+)
XLOC_015232 NA non-coding upstream 816066 9316319 ~ 9318279 (+)
XLOC_015227 NA non-coding upstream 1443316 8690658 ~ 8691029 (+)
XLOC_015252 BX927121.1 non-coding downstream 244738 10386479 ~ 10416272 (+)
XLOC_015253 NA non-coding downstream 421758 10563499 ~ 10564386 (+)
XLOC_015254 NA non-coding downstream 462772 10604513 ~ 10607329 (+)

Expression

Expression of XLOC_015246(ahsg2) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Expression of XLOC_015246(ahsg2) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_02014703_02018248 NA coding CI01000004 null 2014600 ~ 2018466 (+)