XLOC_015247 (pfn2l)


Basic Information

Item Value
gene id XLOC_015247
gene name pfn2l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10147029 ~ 10151839 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030586
GTGGTGGTGGTAAGTCTGTCTGTGCGGAGGGATATAGCACGGGACTACACCCAGGCGCTGTCTCTCAGTTCGTCGGCTTTCTTTCCTGCCCGAGCTGAGATTTCATACAAGCAAACGAGCCGGACACCGGAGGAGACGCCAAAATCCTTCGTCCACACGACCTTTGCTAGACCTTTAGCACTTGTAGCGCTAAATCCACTCCAGTCGGTGTAATACGTCctatcatttcaaataaaaaaaatgtcttggCAAAGCTACGTGGATAACCTGATGGCTGATGGCAGCTGCCAGGATGCCGCCATTGTTGGATACACTGACGCCAAATATGTCTGGGCATCGTCAGAGGGTGGTACGTTTAGCGGTATAACGcctGATGAAATTGATGTCATTGTTGGTAAAGACAGAGAGGGCTTTTTCACCAGTGGACTGACTCTAGGCAAGAAGAAGTGCTCTGTGATCAGAGACAGCCTTCAGGTGGAGGGAGACTGGACAATGGACATCAGGACAAAGAGCCATAATGGAGAGCCGACATACAATGTTTCCATAGGCAGAGCTGGCAAAGTGTTGGTTTTAGTGATGGGAAAGGAAGGTACCCATGGAGGATCGCTCAACAAGCAAGCATATAGCATGGCTGATTACCTGAGGAAAGTTGGATACTAAAGCATCCCCTTCTCATCCACACAGCAGCTCACTTTAAAACACTACAACACACTACAAACCCAGTCATCTTCCCCTAGCCTCTTCCTTGCCCCCTTTAGTCAACATGACAACACTACCAGAAACAGTTAGTAGATTTATTGTTGTCTCTATCAGAGTCTGTTAATTTCttgaaggctttttttttttttgttgttgttgttgtatgctcattgttctctaattttctgagttttgacatgttttttgtgCCACAGTAAATCAAGCATGTTGGTTTTATGAAGGTTCATGACAAACACTAATGTACATACAATAGGTGtaaaatgaagaattaaaaaaaacttggaCGACCCAGAATTTGTGTAGGTTCACAAGTCCATGAAGTGACTATATTGTCCAATTTTTTTTCCTTAGGCACTGCTAATGATCCAGCTTAAGATAGATTGATGCCTCTCAAGTGCTTTGAGTCCTTGCTGAGCTCTTATGGTCTTCCTTGTATACAGCATGTCCAGGATGGAAAAAGTGCATGCATATCTTTTAGGTCAATATCATCATTTCCAGTAACATTACCACCTTGTCTCAGCTTTGAAAATGAAGTTAGCCAATCAAATAACACTTTCTTATTGTTTTTACTCTGTTCTTGGTTTGACCCTGAGCTAATTTGATAAGCACCTTCAGCCCCTAACCCTGTGAACTGCTTTGCCCTTGCCCCAGCTACTTACACACTACCTTTTAAATTTGAACACCTTCCATAAAATGCTTTTGCTGTTGTATTTGGATGTGGTCTTGTAAGTCATTGGTCTAATGTTGGAATATTTTGAGTATGGTGGCAGATCAGCATTTACAAGGTTTGGGTTGAGTTGTTTCCCAAGAGCCTTCGCATCCCGGACTCTTTATGGACATTCCATCGCTAACAACAGCTCAGGCACTTAATAATTGTTGTTTGCcagtttcttttgtttgtttgtttctctcaAGAAGTGTTGCCATCCCAATGTTCAGTCCATTTCACTTTGGGTTCTCCAATAggaccaatgtttttttttttttttgttttttgcatccaAAGGGATTAACAGAATTGCTCCAAACTGTTGTTGTAAAGGAGGATGACTGCTAGTTTCATCTGTTTTTGACTTTATAAAACAATTTTCAACACCTATACAAATACACAATGTAATCCTAAGCTCATTTCTATTAAACACTATTGCTAAGTTcactgactttaaaaaaaaagtatataataacTACCTGAACATTATTCATGAATGTCTTGAATCGATGAAATGGCAGTCTTATTGTTAATATCATCACAAATTTCTTAAACCCTTTTTACTTTTAATCTGTTATTttcaaaaaagaaataatttgGAAGTCATTGCCTTGTAAACTAAATTGCGATGTATCAAACTGTCCTAGCACGGTACAAATGCTTCattaaatagacaaaaaaattaaa
>TCONS_00030587
GGCTTTCTTTCCTGCCCGAGCTGAGATTTCATACAAGCAAACGAGCCGGACACCGGAGGAGACGCCAAAATCCTTCGTCCACACGACCTTTGCTAGACCTTTAGCACTTGTAGCGCTAAATCCACTCCAGTCGGTGTAATACGTCctatcatttcaaataaaaaaaatgtcttggCAAAGCTACGTGGATAACCTGATGGCTGATGGCAGCTGCCAGGATGCCGCCATTGTTGGATACACTGACGCCAAATATGTCTGGGCATCGTCAGAGGGTGGTACGTTTAGCGGTATAACGcctGATGAAATTGATGTCATTGTTGGTAAAGACAGAGAGGGCTTTTTCACCAGTGGACTGACTCTAGGCAAGAAGAAGTGCTCTGTGATCAGAGACAGCCTTCAGGTGGAGGGAGACTGGACAATGGACATCAGGACAAAGAGCCATAATGGAGAGCCGACATACAATGTTTCCATAGGCAGAGCTGGCAAAGTCTTGGTTCTTGTAATGGGCAAAGAAGGGGTCCATGGAGGCGGACTGAATAAGAAGGCATACTCAATGGCAAAATACTTGAGGGATTCGGGGTTCTAATGTAATTAAGCTTGTTTAGTTTCACTTGAGGGACAGAAAGAAGAAAGAAGTTTGCTGTTAAGCTTTCTCCTTCAAGCAGttaatgtcttgaaaaaaattaatagcaaTCAATGGAAGAATGATGATAATTTCTTATGTCCCCGTGTCATCGGGGgggaaagactttttttttttttttcagttttgttcatttgtcgtttttttttctttccttatGTACTCCAGTGTTGGTTTTAGTGATGGGAAAGGAAGGTACCCATGGAGGATCGCTCAACAAGCAAGCATATAGCATGGCTGATTACCTGAGGAAAGTTGGATACTAAAGCATCCCCTTCTCATCCACACAGCAGCTCACTTTAAAACACTACAACACACTACAAACCCAGTCATCTTCCCCTAGCCTCTTCCTTGCCCCCTTTAGTCAACATGACAACACTACCAGAAACAGTTAGTAGATTTATTGTTGTCTCTATCAGAGTCTGTTAATTTCttgaaggctttttttttttttgttgttgttgttgtatgctcattgttctctaattttctgagttttgacatgttttttgtgCCACAGTAAATCAAGCATGTTGGTTTTATGAAGGTTCATGACAAACACTAATGTACATACAATAGGTGtaaaatgaagaattaaaaaaaacttggaCGACCCAGAATTTGTGTAGGTTCACAAGTCCATGAAGTGACTATATTGTCCAATTTTTTTTCCTTAGGCACTGCTAATGATCCAGCTTAAGATAGATTGATGCCTCTCAAGTGCTTTGAGTCCTTGCTGAGCTCTTATGGTCTTCCTTGTATACAGCATGTCCAGGATGGAAAAAGTGCATGCATATCTTTTAGGTCAATATCATCATTTCCAGTAACATTACCACCTTGTCTCAGCTTTGAAAATGAAGTTAGCCAATCAAATAACACTTTCTTATTGTTTTTACTCTGTTCTTGGTTTGACCCTGAGCTAATTTGATAAGCACCTTCAGCCCCTAACCCTGTGAACTGCTTTGCCCTTGCCCCAGCTACTTACACACTACCTTTTAAATTTGAACACCTTCCATAAAATGCTTTTGCTGTTGTATTTGGATGTGGTCTTGTAAGTCATTGGTCTAATGTTGGAATATTTTGAGTATGGTGGCAGATCAGCATTTACAAGGTTTGGGTTGAGTTGTTTCCCAAGAGCCTTCGCATCCCGGACTCTTTATGGACATTCCATCGCTAACAACAGCTCAGGCACTTAATAATTGTTGTTTGCcagtttcttttgtttgtttgtttctctcaAGAAGTGTTGCCATCCCAATGTTCAGTCCATTTCACTTTGGGTTCTCCAATAggaccaatgtttttttttttttttgttttttgcatccaAAGGGATTAACAGAATTGCTCCAAACTGTTGTTGTAAAGGAGGATGACTGCTAGTTTCATCTGTTTTTGACTTTATAAAACAATTTTCAACACCTATACAAATACACAATGTAATCCTAAGCTCATTTCTATTAAACACTATTGCTAAGTTcactgactttaaaaaaaaagtatataataacTACCTGAACATTATTCATGAATGTCTTGAATCGATGAAATGGCAGTCTTATTGTTAATATCATCACAAATTTCTTAAACCCTTTTTACTTTTAATCTGTTATTttcaaaaaagaaataatttgGAAGTCATTGCCTTGTAAACTAAATTGCGATGTATCAAACTGTCCTAGCACGGTACAAATGCTTCattaaatagacaaaaaaattaaatcgtGTACACTAACTTTTTGGGATTTGGTGGTATTAGTTGGAAAAGACCACTAGTCTAAGTCAGTTGTATTGTGGAAACTTGTTAAATAAAGCTGTGTATCCTGTGCCATAATGTAGATCTGATCTGTTGCTACTGTGAGATGGGTTTTAATCGCTGCCGTGTAAGGAGTCAAACCTTCAGTGGCTTCTCTGAGGTTATAAAGTCATACTCCAGGGCTTTTGGAAAATGTACAGATTAAAGAAACATTAATTCATGTCTGGTTTTCTCAGTTTTTAAATTTGCCCAACTGATATTCAGCTCCATTTGCGTGGAATGAGAAATAATGTCATGGTTAAACCCCCTTGTTTACAGACAGATCAAATAAACTTATTCCAATCAGAAAA
>TCONS_00030588
CTGAGATTTCATACAAGCAAACGAGCCGGACACCGGAGGAGACGCCAAAATCCTTCGTCCACACGACCTTTGCTAGACCTTTAGCACTTGTAGCGCTAAATCCACTCCAGTCGGTGTAATACGTCctatcatttcaaataaaaaaaatgtcttggCAAAGCTACGTGGATAACCTGATGGCTGATGGCAGCTGCCAGGATGCCGCCATTGTTGGATACACTGACGCCAAATATGTCTGGGCATCGTCAGAGGGTGGTACGTTTAGCGGTATAACGcctGATGAAATTGATGTCATTGTTGGTAAAGACAGAGAGGGCTTTTTCACCAGTGGACTGACTCTAGGCAAGAAGAAGTGCTCTGTGATCAGAGACAGCCTTCAGGTGGAGGGAGACTGGACAATGGACATCAGGACAAAGAGCCATAATGGAGAGCCGACATACAATGTTTCCATAGGCAGAGCTGGCAAAGTCTTGGTTCTTGTAATGGGCAAAGAAGGGGTCCATGGAGGCGGACTGAATAAGAAGGCATACTCAATGGCAAAATACTTGAGGGATTCGGGGTTCTAATTGTTGGTTTTAGTGATGGGAAAGGAAGGTACCCATGGAGGATCGCTCAACAAGCAAGCATATAGCATGGCTGATTACCTGAGGAAAGTTGGATACTAAAGCATCCCCTTCTCATCCACACAGCAGCTCACTTTAAAACACTACAACACACTACAAACCCAGTCATCTTCCCCTAGCCTCTTCCTTGCCCCCTTTAGTCAACATGACAACACTACCAGAAACAGTTAGTAGATTTATTGTTGTCTCTATC

Function

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0032233 positive regulation of actin filament bundle assembly biological_process
GO:0005737 cytoplasm cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-34 Predicted to enable actin binding activity. Predicted to be involved in positive regulation of actin filament bundle assembly and regulation of actin filament polymerization. Predicted to act upstream of or within actin cytoskeleton organization. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000012682

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030586 False 2116 mRNA 0.40 3 10147029 10151455
TCONS_00030587 False 2749 mRNA 0.38 3 10147103 10151839
TCONS_00030588 True 816 mRNA 0.46 4 10147123 10150150

Neighbor

gene id symbol gene type direction distance location
XLOC_015246 ahsg2 coding upstream 5288 10134345 ~ 10141741 (+)
XLOC_015245 insl5b coding upstream 17968 10127762 ~ 10129061 (+)
XLOC_015244 cmpk coding upstream 70100 10063747 ~ 10076929 (+)
XLOC_015243 slc35a3b coding upstream 106765 9990491 ~ 10040264 (+)
XLOC_015242 sec22ba coding upstream 163368 9970942 ~ 9983661 (+)
XLOC_015248 nsun4 coding downstream 8645 10160484 ~ 10169433 (+)
XLOC_015249 FO704816.1 coding downstream 54162 10206001 ~ 10206118 (+)
XLOC_015250 gadd45aa coding downstream 128806 10280645 ~ 10284572 (+)
XLOC_015251 NA coding downstream 132922 10284761 ~ 10285629 (+)
XLOC_015252 BX927121.1 coding downstream 234640 10386479 ~ 10416272 (+)
XLOC_015239 BX470264.2 non-coding upstream 271384 9875529 ~ 9875645 (+)
XLOC_015236 NA non-coding upstream 489982 9651716 ~ 9657047 (+)
XLOC_015231 NA non-coding upstream 816820 9132585 ~ 9330209 (+)
XLOC_015232 NA non-coding upstream 828750 9316319 ~ 9318279 (+)
XLOC_015227 NA non-coding upstream 1456000 8690658 ~ 8691029 (+)
XLOC_015253 NA non-coding downstream 411660 10563499 ~ 10564386 (+)
XLOC_015254 NA non-coding downstream 452674 10604513 ~ 10607329 (+)

Expression


Co-expression Network