XLOC_015248 (nsun4)


Basic Information

Item Value
gene id XLOC_015248
gene name nsun4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10160484 ~ 10169433 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030589
ATGAGAAAAAACGACGGACGGTATTTGATGATACACAGACATGGCAGCGTACGTGTGCACGAGATtttgtataaacaaatttaaagacTCAGTTAGATTTATTCCGCGACGGTATCGAGTTAAAACAAAATGGGCAGCAACGAGGCCCAAGTTTCCAGCCACTGAACTTGCTCTGCACAGCTTTGACAAAACATATAGTGTACAGTTCGGGGACTTGTGGCCCTCTATTCGTGTTGCCATGCTTTGTGAACAAAAATATGGAGCGCTAATAAACAGCTTCTCTTCAGCATCTGGGGAAATCACAGATTTAGAAGCTGAAGGGTGTAGAGACTTCATAACTATTGACTGTTCTAGAAATGAGGTCCATAAGTCCTCACAGGACCCCACAACCCCTCACAACGATTCGACAGATGTGGAATCAGCTCCTCTTCAAACCAGTATAACTCCTGATATTAAATGTCTTGTTTTCCCCCGAGGAGACATATCTAGATTTAAGCCAGCAAGACCTGACAGCAGTGGTATTTTGGGCTATTATCTTCTGGATGCTGCTTCCGTGCTGCCTGTACTAGCGCTGGACGTCCGGCCTGGACAAACAGTGCTGGATCTGTGTGCGGCTCCTGGAGGAAAAACCCTTGCTCTCCTGCAGGCACATTCAGTCAATCACTTGTGGGCAAATGACTTATCAGTTTCCCGCACTGGTCGATTGCGCAAGATTCTTCAGAGCTACGTGCCTAAAGAGTTTCTGGATGAAGAAAATATTCACATCACTTGCATTGATGGTCGGGAGTTAGGGATGAGAGAGGAGAAGAGCTTTGATAGAGTGCTGGTCGATGTTCCCTGCACAACAGACAGACACTCTGCAGTCGTGGAGGAGAACAATATATTTAAGAGGTCCAGGACCAAAGAGAGACAGAAGCTTCCACTCTTGCAAATCCAGCTTCTTGTGGCTGGCATCCAGGCTGCGCGGCAAGGAGGGCTGATAGTCTACTCTACGTGTTCCCTGTCCCAGCTGCAGAATGAGTGTGTGGTGCAACAGGCTATCAGTGTCGCTCAGGAAGAGTTGGGGATTACAGTGCAGGTTCAGGACCTCAGGTGGTTCACTCAGCGCTTTTCTGACACTTTCCACTTTGCGCCACAGTTAAGTGTCGGGGAACTGGTTTTACCACACCTGTGTGCCAACTTTGGACCAATTTATATGTGTAAATTACAAAGAATGAATTAGAGCAATTTTAAGATGAGCTCCGTTGTTGTTTTTTGCTGCCCCCTAGTGACCAGACATGGAACTTTCAAACGTTTTACTTctttaatgaagaaaaaatagCAAATGATGTGATCATTTTGTTAATTGTAAGTTATTATCAGTTATATATTAAACTTAGATATGATGCAAAAAA

Function

symbol description
nsun4 Predicted to enable methyltransferase activity. Predicted to be involved in rRNA methylation. Predicted to act upstream of or within methylation. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human NSUN4 (NOP2/Sun RNA methyltransferase 4).

GO:

id name namespace
GO:0001510 RNA methylation biological_process
GO:0031167 rRNA methylation biological_process
GO:0032259 methylation biological_process
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-041212-77 Predicted to enable methyltransferase activity. Predicted to be involved in rRNA methylation. Predicted to act upstream of or within methylation. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human NSUN4 (NOP2/Sun RNA methyltransferase 4).

Ensembl:

ensembl_id ENSDARG00000021324

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030589 True 1394 mRNA 0.45 6 10160484 10169433
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_015247 pfn2l coding upstream 8645 10147029 ~ 10151839 (+)
XLOC_015246 ahsg2 coding upstream 18743 10134345 ~ 10141741 (+)
XLOC_015245 insl5b coding upstream 31423 10127762 ~ 10129061 (+)
XLOC_015244 cmpk coding upstream 83555 10063747 ~ 10076929 (+)
XLOC_015243 slc35a3b coding upstream 120220 9990491 ~ 10040264 (+)
XLOC_015249 FO704816.1 coding downstream 36568 10206001 ~ 10206118 (+)
XLOC_015250 gadd45aa coding downstream 111212 10280645 ~ 10284572 (+)
XLOC_015251 NA coding downstream 115328 10284761 ~ 10285629 (+)
XLOC_015252 BX927121.1 coding downstream 217046 10386479 ~ 10416272 (+)
XLOC_015253 NA coding downstream 394066 10563499 ~ 10564386 (+)
XLOC_015239 BX470264.2 non-coding upstream 284839 9875529 ~ 9875645 (+)
XLOC_015236 NA non-coding upstream 503437 9651716 ~ 9657047 (+)
XLOC_015231 NA non-coding upstream 830275 9132585 ~ 9330209 (+)
XLOC_015232 NA non-coding upstream 842205 9316319 ~ 9318279 (+)
XLOC_015227 NA non-coding upstream 1469455 8690658 ~ 8691029 (+)
XLOC_015254 NA non-coding downstream 435080 10604513 ~ 10607329 (+)

Expression

Expression of XLOC_015248(nsun4) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Expression of XLOC_015248(nsun4) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_03505898_03508656 NSUN4 coding CI01000004 null 3505798 ~ 3508770 (-)