XLOC_015250 (gadd45aa)


Basic Information

Item Value
gene id XLOC_015250
gene name gadd45aa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10280645 ~ 10284572 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030591
taatgtaaCGCCTCGCAAAGTCATATTTAGCCGGTGACAGCCAGAGAAAGAACACCAACGAGAACTCTTGTGGATTTATCCAGGTCTCAAAGGAAAGTTATTCAAGTCCGTTCTGGATTTTACATGCAACATGACTTTTGAAGAACTTAACGGAGATTATTCTATTGAAAGGATGAACTCGGTGATTAAGGCTCTGGAGGAGGTCCTGCGCTCCGCATTACCGCAGGGATGTATTACAGTCGGGGTTTACGAGGCTGCAAAGTCCCTCAATGTGGACCCTGATAACGTGGTGCTGTGCATCCTGGCCACTGACGACGACGATGTGAAAGATGTGGCGCTTCAGATTCACTTCACTCTCATCCAGGCTTTCTGCTGCGAGAACGACATCAACATCCTGCGCGTGAACAACACGCGGCGCCTCGCGAACATCCTCGGGGGCGCAGGCATGCACGGGAGCGAGCAGATGGACTTGCACTGCATTCTGGTCACGGTTCCACATGCGTCCACATGGAAGAACCCGGCTCTGGGAAAAGTGAACCGCTTCTGCAGAGAGAGCCGCTGTATGGATCAGTGGGTGCCCATTATCAACCTTCCAGAGCGATGAGCAGAACTGAAACCCAAAATCGGGTGAAAAAACAACACGAAtcaaaaaatatctagcaaaaaaagataaaagctAAAAAAGGTGGTCACAAAAAGGACTGAGAGTTCAGACCGGACGGAAGCTCCTTCAGAATACcctggagaaggaggaggaggagctctCTCTTGCAATGATTCAGCAGTTTTTGGCTTTGTTTGTGGGACTTTCTGAGGACGTCACATGAAGCTAATTGTGAATGGAAGTGAGCACCTGAGTATCTTGTGACAGTTTATTGACGGAGTGTCATAAAGCACTTCAGATAATGACAGGATAGCAGATTTCTCAGTGGACTGTTTTCCAAAGGGGGCTTCCCTTGTTTGTAGATTTGCCATCAATTCTGAATAATATATCAGCAGTACTTGTTTATGAATGTTGCAAATGAAATGATTTTAAAGGGACTTGCTTCATAACCACTGAGATCAAAACTATGCATTCATGATATCCtgtaccatttattattatttcttattttacataattgttttttgtggtctttaaattattttattatattaatttaaatgagtatTTATGTACGACTTTTTATACTATTATATATTGAACTGTGAAATGAGTTTTGtgttgtaataaaaaatacatttaaactcaa

Function

symbol description
gadd45aa Acts upstream of or within paraxial mesoderm development. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including endoderm; eye; intestine; otic placode; and solid lens vesicle. Orthologous to human GADD45A (growth arrest and DNA damage inducible alpha).

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0000185 activation of MAPKKK activity biological_process
GO:0048339 paraxial mesoderm development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1501 Acts upstream of or within paraxial mesoderm development. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including endoderm; eye; intestine; otic placode; and solid lens vesicle. Orthologous to human GADD45A (growth arrest and DNA damage inducible alpha).

Ensembl:

ensembl_id ENSDARG00000043581

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030591 True 1253 mRNA 0.42 4 10280645 10284572
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_015249 FO704816.1 coding upstream 74527 10206001 ~ 10206118 (+)
XLOC_015248 nsun4 coding upstream 111212 10160484 ~ 10169433 (+)
XLOC_015247 pfn2l coding upstream 128806 10147029 ~ 10151839 (+)
XLOC_015246 ahsg2 coding upstream 138904 10134345 ~ 10141741 (+)
XLOC_015245 insl5b coding upstream 151584 10127762 ~ 10129061 (+)
XLOC_015251 NA coding downstream 189 10284761 ~ 10285629 (+)
XLOC_015252 BX927121.1 coding downstream 101907 10386479 ~ 10416272 (+)
XLOC_015253 NA coding downstream 278927 10563499 ~ 10564386 (+)
XLOC_015254 NA coding downstream 319941 10604513 ~ 10607329 (+)
XLOC_015255 dipk1aa coding downstream 357475 10642047 ~ 10687230 (+)
XLOC_015239 BX470264.2 non-coding upstream 405000 9875529 ~ 9875645 (+)
XLOC_015236 NA non-coding upstream 623598 9651716 ~ 9657047 (+)
XLOC_015231 NA non-coding upstream 950436 9132585 ~ 9330209 (+)
XLOC_015232 NA non-coding upstream 962366 9316319 ~ 9318279 (+)
XLOC_015261 CR450845.1 non-coding downstream 722085 11006657 ~ 11006790 (+)

Expression

Expression of XLOC_015250(gadd45aa) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Expression of XLOC_015250(gadd45aa) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_03433963_03436906 GADD45A, GADD45AA coding CI01000004 null 3433832 ~ 3436906 (-)