XLOC_015251


Basic Information

Item Value
gene id XLOC_015251
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10284761 ~ 10285629 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033487
CTGAAATGAATGGCTCGGGCTCAGCTTACTGTACCGCTTTTGCGTGCGTCAAGGTCAAACATGCTGCTGTAAATCAGAATTGCTCTTAATTGTGCTGAACTGATACGGCTTTGTAGGTTAAAAGTCAGCGTGTAGAAAGCACATTGCGCAAAGCCAGCTGGGAACGGAAGTGCTTGGAGACGCCTCTCTGAAAGGTGCGGTTTTTATCACATGGCTGGCACACATTGGGTTGGAGTTTTAGGTGCCACATACCAGTAAATCTGTTGCGAAAGCCACCACTTCTCTGTACAGAGGTGATGACGCAAGGGAGATTTGGCTGATGTTTGGGCCGTGCAATGCAGctccacaggtcccaaaaccaagcaagccagtggtgacagtgaaGAGGAACAAAATTTCACCaactgacaaaagtgaag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033487 True 419 lncRNA 0.48 2 10284761 10285629
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_015250 gadd45aa coding upstream 189 10280645 ~ 10284572 (+)
XLOC_015249 FO704816.1 coding upstream 78643 10206001 ~ 10206118 (+)
XLOC_015248 nsun4 coding upstream 115328 10160484 ~ 10169433 (+)
XLOC_015247 pfn2l coding upstream 132922 10147029 ~ 10151839 (+)
XLOC_015246 ahsg2 coding upstream 143020 10134345 ~ 10141741 (+)
XLOC_015252 BX927121.1 coding downstream 100850 10386479 ~ 10416272 (+)
XLOC_015253 NA coding downstream 277870 10563499 ~ 10564386 (+)
XLOC_015254 NA coding downstream 318884 10604513 ~ 10607329 (+)
XLOC_015255 dipk1aa coding downstream 356418 10642047 ~ 10687230 (+)
XLOC_015256 evi5a coding downstream 423928 10709557 ~ 10760516 (+)
XLOC_015239 BX470264.2 non-coding upstream 409116 9875529 ~ 9875645 (+)
XLOC_015236 NA non-coding upstream 627714 9651716 ~ 9657047 (+)
XLOC_015231 NA non-coding upstream 954552 9132585 ~ 9330209 (+)
XLOC_015261 CR450845.1 non-coding downstream 721028 11006657 ~ 11006790 (+)
XLOC_015265 BX901918.1 non-coding downstream 958257 11243886 ~ 11244007 (+)
XLOC_015232 NA non-coding upstream 966482 9316319 ~ 9318279 (+)

Expression

Expression of XLOC_015251 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Expression of XLOC_015251 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Co-expression Network