XLOC_015253


Basic Information

Item Value
gene id XLOC_015253
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10563499 ~ 10564386 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033488
CAGTTGATTTCTCAAGGTGACAACATCCTCTACCAAACCCCTGCTGTCTCTCAACATTGGTGACAGTTATGAAGACACCTGGGAATAAAAGGTTAACTAAGCGAATGTATAACATTAACACTGGTGTTTAAATGTACTTGGTGTAAAAACAACACGAACATGATAATTTGTAGAAACATTAAACACTCGCTTAAATTAAGAGTTAACGTTATATTAAAGTATAGTCGTATCAAGTGCTGTCTATGTATggttattattataagttattatcATACCTGCCTGACGCTCGTTTCATTTGATGCATTCAACAGGTTGTCAAGGAACAGATGGACACTCTTGGGTCATTTTCAACTCTCCGCTACTTTTTGCTGGGATAATTCACAAAAATAGCTCTATACCAGTAAATCGATGCGTACCAGCATGTTCTAATGGAAGGTTTTGACctaaaaaacactttatttccaCCGTTAGCTTAGCATTCGCTGCAGTGAAATCTAAACAATACGCGCTGCCGTCGTCACGGAAGCTGATTGGCTGAGACAAAAAACCGTCCCTTAACAGTCGTGACGCAATCTTGACGCGCTTGTAGCGCCGCGAATGACAGCGCGAAGATCACAAAGGGAACAAACATGTTTGTGATATTCCGTAACACTATGTGAATCTTACAatattctctcttttttataATAGATGACTGTATTGTATGTGATCTTGTAAACATCACTGTGAccttgctttaaatttaaagtgctttttgtaatttatattccCCCTGGCATATTATTtagtttgtcattttgttttgttctgttctctaCTCTTGTTGTTAAAGGTTTTGTaccttttctgtatatttttgtattcttgttgaacgctttaataaaaaaa

Function

GO:

id name namespace
GO:0048468 cell development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022612 gland morphogenesis biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0006935 chemotaxis biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0030182 neuron differentiation biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0048850 hypophysis morphogenesis biological_process
GO:0048852 diencephalon morphogenesis biological_process
GO:0048853 forebrain morphogenesis biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0033504 floor plate development biological_process
GO:0033505 floor plate morphogenesis biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0071679 commissural neuron axon guidance biological_process
GO:0040011 locomotion biological_process
GO:0097485 neuron projection guidance biological_process
GO:0061564 axon development biological_process
GO:0048666 neuron development biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0021983 pituitary gland development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0042330 taxis biological_process
GO:0007418 ventral midline development biological_process
GO:0022008 neurogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:0048699 generation of neurons biological_process
GO:0031175 neuron projection development biological_process
GO:0021508 floor plate formation biological_process
GO:0016043 cellular component organization biological_process
GO:0021510 spinal cord development biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033488 True 888 lncRNA 0.36 1 10563499 10564386

Neighbor

gene id symbol gene type direction distance location
XLOC_015252 BX927121.1 coding upstream 147227 10386479 ~ 10416272 (+)
XLOC_015251 NA coding upstream 277870 10284761 ~ 10285629 (+)
XLOC_015250 gadd45aa coding upstream 278927 10280645 ~ 10284572 (+)
XLOC_015249 FO704816.1 coding upstream 357381 10206001 ~ 10206118 (+)
XLOC_015248 nsun4 coding upstream 394066 10160484 ~ 10169433 (+)
XLOC_015254 NA coding downstream 40127 10604513 ~ 10607329 (+)
XLOC_015255 dipk1aa coding downstream 77661 10642047 ~ 10687230 (+)
XLOC_015256 evi5a coding downstream 145171 10709557 ~ 10760516 (+)
XLOC_015257 gfi1aa coding downstream 202358 10766744 ~ 10785866 (+)
XLOC_015258 glmna coding downstream 256741 10821127 ~ 10857898 (+)
XLOC_015239 BX470264.2 non-coding upstream 687854 9875529 ~ 9875645 (+)
XLOC_015236 NA non-coding upstream 906452 9651716 ~ 9657047 (+)
XLOC_015261 CR450845.1 non-coding downstream 442271 11006657 ~ 11006790 (+)
XLOC_015265 BX901918.1 non-coding downstream 679500 11243886 ~ 11244007 (+)
XLOC_015266 NA non-coding downstream 1064616 11629002 ~ 11633323 (+)
XLOC_015267 BX890600.1 non-coding downstream 1083777 11648163 ~ 11648838 (+)

Expression


Co-expression Network