XLOC_015253


Basic Information

Item Value
gene id XLOC_015253
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10563499 ~ 10564386 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033488
CAGTTGATTTCTCAAGGTGACAACATCCTCTACCAAACCCCTGCTGTCTCTCAACATTGGTGACAGTTATGAAGACACCTGGGAATAAAAGGTTAACTAAGCGAATGTATAACATTAACACTGGTGTTTAAATGTACTTGGTGTAAAAACAACACGAACATGATAATTTGTAGAAACATTAAACACTCGCTTAAATTAAGAGTTAACGTTATATTAAAGTATAGTCGTATCAAGTGCTGTCTATGTATggttattattataagttattatcATACCTGCCTGACGCTCGTTTCATTTGATGCATTCAACAGGTTGTCAAGGAACAGATGGACACTCTTGGGTCATTTTCAACTCTCCGCTACTTTTTGCTGGGATAATTCACAAAAATAGCTCTATACCAGTAAATCGATGCGTACCAGCATGTTCTAATGGAAGGTTTTGACctaaaaaacactttatttccaCCGTTAGCTTAGCATTCGCTGCAGTGAAATCTAAACAATACGCGCTGCCGTCGTCACGGAAGCTGATTGGCTGAGACAAAAAACCGTCCCTTAACAGTCGTGACGCAATCTTGACGCGCTTGTAGCGCCGCGAATGACAGCGCGAAGATCACAAAGGGAACAAACATGTTTGTGATATTCCGTAACACTATGTGAATCTTACAatattctctcttttttataATAGATGACTGTATTGTATGTGATCTTGTAAACATCACTGTGAccttgctttaaatttaaagtgctttttgtaatttatattccCCCTGGCATATTATTtagtttgtcattttgttttgttctgttctctaCTCTTGTTGTTAAAGGTTTTGTaccttttctgtatatttttgtattcttgttgaacgctttaataaaaaaa

Function

GO:

id name namespace
GO:0048468 cell development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022612 gland morphogenesis biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0006935 chemotaxis biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0030182 neuron differentiation biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0048850 hypophysis morphogenesis biological_process
GO:0048852 diencephalon morphogenesis biological_process
GO:0048853 forebrain morphogenesis biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0033504 floor plate development biological_process
GO:0033505 floor plate morphogenesis biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0071679 commissural neuron axon guidance biological_process
GO:0040011 locomotion biological_process
GO:0097485 neuron projection guidance biological_process
GO:0061564 axon development biological_process
GO:0048666 neuron development biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0021983 pituitary gland development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0042330 taxis biological_process
GO:0007418 ventral midline development biological_process
GO:0022008 neurogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:0048699 generation of neurons biological_process
GO:0031175 neuron projection development biological_process
GO:0021508 floor plate formation biological_process
GO:0016043 cellular component organization biological_process
GO:0021510 spinal cord development biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033488 True 888 lncRNA 0.36 1 10563499 10564386
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_015252 BX927121.1 coding upstream 147227 10386479 ~ 10416272 (+)
XLOC_015251 NA coding upstream 277870 10284761 ~ 10285629 (+)
XLOC_015250 gadd45aa coding upstream 278927 10280645 ~ 10284572 (+)
XLOC_015249 FO704816.1 coding upstream 357381 10206001 ~ 10206118 (+)
XLOC_015248 nsun4 coding upstream 394066 10160484 ~ 10169433 (+)
XLOC_015254 NA coding downstream 40127 10604513 ~ 10607329 (+)
XLOC_015255 dipk1aa coding downstream 77661 10642047 ~ 10687230 (+)
XLOC_015256 evi5a coding downstream 145171 10709557 ~ 10760516 (+)
XLOC_015257 gfi1aa coding downstream 202358 10766744 ~ 10785866 (+)
XLOC_015258 glmna coding downstream 256741 10821127 ~ 10857898 (+)
XLOC_015239 BX470264.2 non-coding upstream 687854 9875529 ~ 9875645 (+)
XLOC_015236 NA non-coding upstream 906452 9651716 ~ 9657047 (+)
XLOC_015261 CR450845.1 non-coding downstream 442271 11006657 ~ 11006790 (+)
XLOC_015265 BX901918.1 non-coding downstream 679500 11243886 ~ 11244007 (+)
XLOC_015266 NA non-coding downstream 1064616 11629002 ~ 11633323 (+)
XLOC_015267 BX890600.1 non-coding downstream 1083777 11648163 ~ 11648838 (+)

Expression

Expression of XLOC_015253 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.

Co-expression Network