XLOC_015254


Basic Information

Item Value
gene id XLOC_015254
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10604513 ~ 10607329 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033489
aaatactgtatgtCAGCAAGGTCTCAGacttatttctgttattttggggcaaataattatttttaaaaatgaatacacTTAGTCATTTAATAGTTGAAAATACACCAATAAGGTTTGAGATCTTTATTCTTTGGCTAAAGGAGCCTGCTCAAAGCCAGTAAAATACAAAGCAAGCTTTACTAACACTGGTACACCAACTGAATAATGCTTCATACACATAACAAGAGCTTATTATtcatacaaattattatttttgtatcaaAACCAGGAGGTAATTACGTTCAATTTGCCTGATATCAATGCTACTTCAACCATCTGCAAAAGACTCAATCGTATTATTGAAAACAGGGCAAACAAAATACTTTCCCTcctatatttcacaaatattgagGACTTTAGAAATGTATGAAAATACAgagaattggaaaaaaaaaaatctcatttagaTGTCTTATCAAATCTTAGTGAGGCTGTAAGGAATCCTGAGTGCTCTGGACAGTTTGTTAGTGTACGACGTTTCGAAAGCAATAATAAATAGCACCACAAAAAGCCTGAGTCAATCAATTgtaacaaatattgctgctgttttcTGATTGGGATGTGAAgctgcaaaataaaaaacaaaagtaataatattaataatacacagTTCCTATGAAGTTGTTGCATAGTATAACAAAAAGTAAACCGATAAGACGTTGCCCTCCCCCGCGATAACAGATTTAAAATGGCTGAAACTAAAACGCCACTTAACCTAAAAGGAAAATCTCAAAACCTGAACTGAAATTGCAAAGGTAGGTACCAACAGCtaaagtttaatattattattattattagaagaagACCTCCTAAACCTACAGCGCTCTTTCATATGATTTTAAGATATatgtatttctaaaaaaaataataataaggaaaCAACGAAAACCTCAGGAGACAAAATGATAAACGTTCAATTCTGGCAATTTTTGTGAACAAAATCTCAGAAAAACACAATGTTTGAAAATATTAATGCaattctttttttccattttaacagCAAGAGTAGAATTAACCATTTTACAttgttgtttgctttttttaattacaaaatgaaCACATTAGGCTGTTTAAAGGAACATTTCACCTATATGAAACCTGTCACAATTGGCTCGCCCTCAATATATCCTAGCTGTCAATATATCCTTTAGTCTTTCAGATGAACATAATCTACGCTACATTAACTAATATCCTGGCTCTTCCTGCCattataatggcagtgaatggtgctCGAGTGTTTAAAGCTCCAGTAAGCATGTCCAAAATGAACACATTAGGCTGTTTAAAGGAATAGGTCACCTAATGAATGAAACCCATCCCAATCTGCTCACCCACAATATATACTAGCTGTACATGCCTTTAGTTCTTCAGATTAACATTAACGTTATATTATTAACTACTATCCTGGCTCTATAATAGCAGTGAatggtgcttttttttttgcatttttgtttttaaagagtttAAGCATGTCCATTCATCATAAAAGTGAACTATTTAGTACAAGTGGAATAATCAATTGCTTAAAAATATCAATACCTTAATCCATTTCATGTTAGGCTTGTCAGAAGTATCGACTTTGGTACCAATCActactaaaattttaaaaacgtcccgTTAACATTCTcactgctgattggccattgtgttacCATGCTTAAGATACAGATataaacacagataaacaaaGACTGGAGCGTTTCAAAAGCCACGTCTATCAGCTGATCCATCATATGAGCGATGCGCTGAGGGGTCGACTGTTCgatgtgtatctgtgtttgcgcCAGGTGAAGAGTGGTAAACCGATGGTCTTcttagccaatcacagtcatatctgttACATAAACACAACGGCCAATCAGTGGTACTGAAGTACATGCTCATGTAAGCgggaaataaacaaaaagaaaacgttttagaaaaatgttttaacATTGAAACGTGAACATTTTTCGTTAAAATTCTTTAACTCTGCTCATTGGCCATCATGTTGCTCAACAGATACAGATATGATCACAGACACAAAGCGTTTCAGAAGCCTTAGGGGATATGTCATATGAGCGATCTGCTTAATGAACGACTGTTTCACTTGGCTacgaaacgctccagtgtccgcGTATTTGTGTTTGCGCTAGGTTAGTGGTGTCCAAAcacgttcctggaggAGTGGTAAATCTTATTGGATGATCACAGTCATATCTATTGCGCACATGAACACAACAACCAATCAGCAGTATTTAAGAACACGCTATAATGTTGGCGgaaaactgacatttaaaaaattaccaATTACCGTTTGGTATCGAAATCGATACCTTTGACAACCCTACTACATACGAGACTCATATTATGACATAATGGACAATAAAATAAGAATCGACATACTGTGTTGGAGTTGTTTTCTGTACTCGGGCTGCATAAGTATCAGTGTTAAAATGGTGAGTGAACATTAACGTATTCATTTCTTCTATTGCACTAATGCCAAATCATTCTAGTTCGCTTCTGCAATATAGGTTAAATGTTCAAACTCAGCtcagatttttattataaatCATTTGCTTTGCTTCTTTAGGCATTCATTAACTCACTGAAGTCTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033489 True 2636 lncRNA 0.35 2 10604513 10607329

Neighbor

gene id symbol gene type direction distance location
XLOC_015253 NA coding upstream 40127 10563499 ~ 10564386 (+)
XLOC_015252 BX927121.1 coding upstream 188241 10386479 ~ 10416272 (+)
XLOC_015251 NA coding upstream 318884 10284761 ~ 10285629 (+)
XLOC_015250 gadd45aa coding upstream 319941 10280645 ~ 10284572 (+)
XLOC_015249 FO704816.1 coding upstream 398395 10206001 ~ 10206118 (+)
XLOC_015255 dipk1aa coding downstream 34718 10642047 ~ 10687230 (+)
XLOC_015256 evi5a coding downstream 102228 10709557 ~ 10760516 (+)
XLOC_015257 gfi1aa coding downstream 159415 10766744 ~ 10785866 (+)
XLOC_015258 glmna coding downstream 213798 10821127 ~ 10857898 (+)
XLOC_015259 tceanc2 coding downstream 271077 10878406 ~ 10880549 (+)
XLOC_015239 BX470264.2 non-coding upstream 728868 9875529 ~ 9875645 (+)
XLOC_015261 CR450845.1 non-coding downstream 399328 11006657 ~ 11006790 (+)
XLOC_015265 BX901918.1 non-coding downstream 636557 11243886 ~ 11244007 (+)
XLOC_015266 NA non-coding downstream 1021673 11629002 ~ 11633323 (+)
XLOC_015267 BX890600.1 non-coding downstream 1040834 11648163 ~ 11648838 (+)
XLOC_015274 NA non-coding downstream 2028598 12635927 ~ 12637877 (+)

Expression


Co-expression Network