XLOC_015254


Basic Information

Item Value
gene id XLOC_015254
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10604513 ~ 10607329 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033489
aaatactgtatgtCAGCAAGGTCTCAGacttatttctgttattttggggcaaataattatttttaaaaatgaatacacTTAGTCATTTAATAGTTGAAAATACACCAATAAGGTTTGAGATCTTTATTCTTTGGCTAAAGGAGCCTGCTCAAAGCCAGTAAAATACAAAGCAAGCTTTACTAACACTGGTACACCAACTGAATAATGCTTCATACACATAACAAGAGCTTATTATtcatacaaattattatttttgtatcaaAACCAGGAGGTAATTACGTTCAATTTGCCTGATATCAATGCTACTTCAACCATCTGCAAAAGACTCAATCGTATTATTGAAAACAGGGCAAACAAAATACTTTCCCTcctatatttcacaaatattgagGACTTTAGAAATGTATGAAAATACAgagaattggaaaaaaaaaaatctcatttagaTGTCTTATCAAATCTTAGTGAGGCTGTAAGGAATCCTGAGTGCTCTGGACAGTTTGTTAGTGTACGACGTTTCGAAAGCAATAATAAATAGCACCACAAAAAGCCTGAGTCAATCAATTgtaacaaatattgctgctgttttcTGATTGGGATGTGAAgctgcaaaataaaaaacaaaagtaataatattaataatacacagTTCCTATGAAGTTGTTGCATAGTATAACAAAAAGTAAACCGATAAGACGTTGCCCTCCCCCGCGATAACAGATTTAAAATGGCTGAAACTAAAACGCCACTTAACCTAAAAGGAAAATCTCAAAACCTGAACTGAAATTGCAAAGGTAGGTACCAACAGCtaaagtttaatattattattattattagaagaagACCTCCTAAACCTACAGCGCTCTTTCATATGATTTTAAGATATatgtatttctaaaaaaaataataataaggaaaCAACGAAAACCTCAGGAGACAAAATGATAAACGTTCAATTCTGGCAATTTTTGTGAACAAAATCTCAGAAAAACACAATGTTTGAAAATATTAATGCaattctttttttccattttaacagCAAGAGTAGAATTAACCATTTTACAttgttgtttgctttttttaattacaaaatgaaCACATTAGGCTGTTTAAAGGAACATTTCACCTATATGAAACCTGTCACAATTGGCTCGCCCTCAATATATCCTAGCTGTCAATATATCCTTTAGTCTTTCAGATGAACATAATCTACGCTACATTAACTAATATCCTGGCTCTTCCTGCCattataatggcagtgaatggtgctCGAGTGTTTAAAGCTCCAGTAAGCATGTCCAAAATGAACACATTAGGCTGTTTAAAGGAATAGGTCACCTAATGAATGAAACCCATCCCAATCTGCTCACCCACAATATATACTAGCTGTACATGCCTTTAGTTCTTCAGATTAACATTAACGTTATATTATTAACTACTATCCTGGCTCTATAATAGCAGTGAatggtgcttttttttttgcatttttgtttttaaagagtttAAGCATGTCCATTCATCATAAAAGTGAACTATTTAGTACAAGTGGAATAATCAATTGCTTAAAAATATCAATACCTTAATCCATTTCATGTTAGGCTTGTCAGAAGTATCGACTTTGGTACCAATCActactaaaattttaaaaacgtcccgTTAACATTCTcactgctgattggccattgtgttacCATGCTTAAGATACAGATataaacacagataaacaaaGACTGGAGCGTTTCAAAAGCCACGTCTATCAGCTGATCCATCATATGAGCGATGCGCTGAGGGGTCGACTGTTCgatgtgtatctgtgtttgcgcCAGGTGAAGAGTGGTAAACCGATGGTCTTcttagccaatcacagtcatatctgttACATAAACACAACGGCCAATCAGTGGTACTGAAGTACATGCTCATGTAAGCgggaaataaacaaaaagaaaacgttttagaaaaatgttttaacATTGAAACGTGAACATTTTTCGTTAAAATTCTTTAACTCTGCTCATTGGCCATCATGTTGCTCAACAGATACAGATATGATCACAGACACAAAGCGTTTCAGAAGCCTTAGGGGATATGTCATATGAGCGATCTGCTTAATGAACGACTGTTTCACTTGGCTacgaaacgctccagtgtccgcGTATTTGTGTTTGCGCTAGGTTAGTGGTGTCCAAAcacgttcctggaggAGTGGTAAATCTTATTGGATGATCACAGTCATATCTATTGCGCACATGAACACAACAACCAATCAGCAGTATTTAAGAACACGCTATAATGTTGGCGgaaaactgacatttaaaaaattaccaATTACCGTTTGGTATCGAAATCGATACCTTTGACAACCCTACTACATACGAGACTCATATTATGACATAATGGACAATAAAATAAGAATCGACATACTGTGTTGGAGTTGTTTTCTGTACTCGGGCTGCATAAGTATCAGTGTTAAAATGGTGAGTGAACATTAACGTATTCATTTCTTCTATTGCACTAATGCCAAATCATTCTAGTTCGCTTCTGCAATATAGGTTAAATGTTCAAACTCAGCtcagatttttattataaatCATTTGCTTTGCTTCTTTAGGCATTCATTAACTCACTGAAGTCTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033489 True 2636 lncRNA 0.35 2 10604513 10607329
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_015253 NA coding upstream 40127 10563499 ~ 10564386 (+)
XLOC_015252 BX927121.1 coding upstream 188241 10386479 ~ 10416272 (+)
XLOC_015251 NA coding upstream 318884 10284761 ~ 10285629 (+)
XLOC_015250 gadd45aa coding upstream 319941 10280645 ~ 10284572 (+)
XLOC_015249 FO704816.1 coding upstream 398395 10206001 ~ 10206118 (+)
XLOC_015255 dipk1aa coding downstream 34718 10642047 ~ 10687230 (+)
XLOC_015256 evi5a coding downstream 102228 10709557 ~ 10760516 (+)
XLOC_015257 gfi1aa coding downstream 159415 10766744 ~ 10785866 (+)
XLOC_015258 glmna coding downstream 213798 10821127 ~ 10857898 (+)
XLOC_015259 tceanc2 coding downstream 271077 10878406 ~ 10880549 (+)
XLOC_015239 BX470264.2 non-coding upstream 728868 9875529 ~ 9875645 (+)
XLOC_015261 CR450845.1 non-coding downstream 399328 11006657 ~ 11006790 (+)
XLOC_015265 BX901918.1 non-coding downstream 636557 11243886 ~ 11244007 (+)
XLOC_015266 NA non-coding downstream 1021673 11629002 ~ 11633323 (+)
XLOC_015267 BX890600.1 non-coding downstream 1040834 11648163 ~ 11648838 (+)
XLOC_015274 NA non-coding downstream 2028598 12635927 ~ 12637877 (+)

Expression

Expression of XLOC_015254 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2.
End of interactive chart.

Co-expression Network