XLOC_015257 (gfi1aa)


Basic Information

Item Value
gene id XLOC_015257
gene name gfi1aa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10766744 ~ 10785866 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030597
GGAGACAGAGCAGCACAGCATTAAACTCCACTCCACTCATCTCTATAGCGGGACACAGGAGCGCACAGCAACAGGCTAGATTGGAGAGCTGTGAGTGATTGGTGACCCTGAAGCTGATAACGGAGCGTAAACATGCCGAGGTCATTTTTGGTGAAGAGCAAACGGGCGCACAGTTATCATCAGCCCCGTTACCTGGATGACAACTGCATCTCAATCGAGAAACTTCTCACTTGCCAAGAAAGTCAAACCGGACAGGCTCCTGAAAGCCCGCTGGATGTGGGCAATCAGTCCCCTAAAGCCAGCATGGTGTGCACGGCAGATCAGTCTTCTCAACAGTCCCCGCTGAGCTGCGAGGGCAGTGTGTGTGACCGCTCATCCGACTATGAGGACTTCTGGAGACCCCTGTCATCAGGAACCTCGCCGGATCTGGATAAATGCCCGGTTCCTTCTCCAGACGACTCTCAGCCTTTCGACATGTCCTTCCGTCCATACGTTTGGTCTCATTCATCATCTGAGCTCAGGCATCTCATTCAGTCCTGCAATCGTGTTTCTGTGGATTCAGACTCGTCAGTGGGGGTTTACGATGCTATGGACAGAAGGCCGAGCGCTCATCTCCTCATCCAACCAACACAATCTAGGCGATTTTACCAGGACTATGGCTCCCTGACCCCTAACCTGCTGGATAATCGAGGCTTTTACACTGACTTCAAGATGTCGACTAAAGTAGCAGAGACTGATTCAGAGTCAGATATGACGTGCACACGACTTCAACTAAGCGGGTCCTACAAATGCATAAAATGCACTAAGGTGTTTTCCACTCCCCATGGCTTGGAAGTTCACGTGCGAAGGTCACACAGCGGCACAAGGCCCTTTGCCTGCGAAATCTGTGGCAAAACCTTCGGCCACGCCGTCAGTCTGGAGCAACATAAAGCCGTCCATTCACAAGAAAGGGTCTTCAGCTGTAAAATCTGTGACAAAAGCTTTAAGAGATCGTCCACTTTGTCCACGCACCTTCTCATCCACTCGGACACCAGACCGTATCCCTGTCAGTACTGCGGAAAACGCTTCCATCAGAAATCTGATATGAAGAAGCACACGTTCATTCATACAGGTGAAAAGCCTCACAAATGTCAAGTGTGTGGCAAAGCTTTCAGTCAGAGTTCAAACCTCATCACGCACAGCAGAAAACACACTGGATTCAAACCTTTCGGATGTGACCTGTGTGGCAAAGGCTTCCAGCGCAAAGTAGATCTCAGGAGACACAAAGAAACACAGCACGGGctaaaataatgactaaaaaacaACAATACGTTGGTTTGCTTGCACGTGAGACACTATGTAGAATTAGAAGGTTAATATTGTGTGCTTTTGTTTAGGATCCAGTATTTTTTCCAGTTTccagtattttataataaattgtaattaatttgtccttgtaaaatattaataaagagattaagaaTA
>TCONS_00030598
GCTAGATTGGAGAGCTGTGAGTGATTGGTGACCCTGAAGCTGATAACGGAGCGTAAACATGCCGAGGTCATTTTTGGTGAAGAGCAAACGGGCGCACAGTTATCATCAGCCCCGTTACCTGGATGACAACTGCATCTCAATCGAGAAACTTCTCACTTGCCAAGAAAGTCAAACCGGACAGGCTCCTGAAAGCCCGCTGGATGTGGGCAATCAGTCCCCTAAAGCCAGCATGGTGTGCACGGCAGATCAGTCTTCTCAACAGTCCCCGCTGAGCTGCGAGGGCAGTGTGTGTGACCGCTCATCCGACTATGAGGACTTCTGGAGACCCCTGTCATCAGGAACCTCGCCGGATCTGGATAAATGCCCGGTTCCTTCTCCAGACGACTCTCAGCCTTTCGACATGTCCTTCCGTCCATACGTTTGGTCTCATTCATCATCTGAGCTCAGGCATCTCATTCAGTCCTGCAATCGTGTTTCTGTGGATTCAGACTCGTCAGTGGGGGTTTACGATGCTATGGACAGAAGGCCGAGCGCTCATCTCCTCATCCAACCAACACAATCTAGGCGATTTTACCAGGACTATGGCTCCCTGACCCCTAACCTGCTGGATAATCGAGGCTTTTACACTGACTTCAAGATGTCGACTAAAGTAGCAGAGACTGATTCAGAGTCAGATATGACGTGCACACGACTTCAACTAAGCGGGTCCTACAAATGCATAAAATGCACTAAGGTGTTTTCCACTCCCCATGGCTTGGAAGTTCACGTGCGAAGGTCACACAGCGGCACAAGGCCCTTTGCCTGCGAAATCTGTGGCAAAACCTTCGGCCACGCCGTCAGTCTGGAGCAACATAAAGCCGTCCATTCACAAGAAAGGGTCTTCAGCTGTAAAATCTGTGACAAAAGCTTTAAGAGATCGTCCACTTTGTCCACGCACCTTCTCATCCACTCGGACACCAGACCGTATCCCTGTCAGTACTGCGGAAAACGCTTCCATCAGAAATCTGATATGAAGAAGCACACGTTCATTCATACAGGTGAAAAGCCTCACAAATGTCAAGTGTGTGGCAAAGCTTTCAGTCAGAGTTCAAACCTCATCACGCACAGCAGAAAACACACTGGATTCAAACCTTTCGGATGTGACCTGTGTGGCAAAGGCTTCCAGCGCAAAGTAGATCTCAGGAGACACAAAGAAACACAGCACGGGctaaaataatgactaaaaaacaACAATACGTTGGTTTGCTTGCACGTGAGACACTATGTAGAATTAGAAGGTTAATATTGTGTGCTTTTGTTTAGGATCCAGTATTTTTTCCAGTTTccagtattttataataaattgtaattaatttgtccttgtaaaatattaataaagagattaagaaTATGCCTGTTGATTTATATCCTtcgacacacactcatacatttatatttatttcaaagcgTTTTCATGCTTAAACaaaacgaaagcacagaacagactcacatttaagagcaaggggcggcccctggtggttcagcggtatgggttgcgaatagggaggctcggctctttaatgtttcctgccacccttcagagaaacactgaaaatactagtgatggg

Function

symbol description
gfi1aa Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within primitive erythrocyte differentiation. Predicted to be active in nucleoplasm. Is expressed in several structures, including artery; hematopoietic cell; intermediate cell mass of mesoderm; mesoderm; and sensory system. Human ortholog(s) of this gene implicated in acute myeloid leukemia and severe congenital neutropenia 2. Orthologous to human GFI1 (growth factor independent 1 transcriptional repressor).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0005654 nucleoplasm cellular_component
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-534 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within primitive erythrocyte differentiation. Predicted to be active in nucleoplasm. Is expressed in several structures, including artery; hematopoietic cell; intermediate cell mass of mesoderm; mesoderm; and sensory system. Human ortholog(s) of this gene implicated in acute myeloid leukemia and severe congenital neutropenia 2. Orthologous to human GFI1 (growth factor independent 1 transcriptional repressor).

Ensembl:

ensembl_id ENSDARG00000020746

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030597 False 1464 mRNA 0.47 7 10766744 10785649
TCONS_00030598 True 1607 mRNA 0.47 6 10771787 10785866
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_015256 evi5a coding upstream 6228 10709557 ~ 10760516 (+)
XLOC_015255 dipk1aa coding upstream 79514 10642047 ~ 10687230 (+)
XLOC_015254 NA coding upstream 159415 10604513 ~ 10607329 (+)
XLOC_015253 NA coding upstream 202358 10563499 ~ 10564386 (+)
XLOC_015252 BX927121.1 coding upstream 350472 10386479 ~ 10416272 (+)
XLOC_015258 glmna coding downstream 35261 10821127 ~ 10857898 (+)
XLOC_015259 tceanc2 coding downstream 92540 10878406 ~ 10880549 (+)
XLOC_015260 mrpl37 coding downstream 128157 10914023 ~ 10931770 (+)
XLOC_015261 CR450845.1 coding downstream 220791 11006657 ~ 11006790 (+)
XLOC_015262 acot11a coding downstream 243057 11028923 ~ 11063878 (+)
XLOC_015251 NA non-coding upstream 481115 10284761 ~ 10285629 (+)
XLOC_015249 FO704816.1 non-coding upstream 560626 10206001 ~ 10206118 (+)
XLOC_015265 BX901918.1 non-coding downstream 458020 11243886 ~ 11244007 (+)
XLOC_015266 NA non-coding downstream 843136 11629002 ~ 11633323 (+)
XLOC_015267 BX890600.1 non-coding downstream 862297 11648163 ~ 11648838 (+)
XLOC_015274 NA non-coding downstream 1850061 12635927 ~ 12637877 (+)

Expression

Expression of XLOC_015257(gfi1aa) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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Expression of XLOC_015257(gfi1aa) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network