XLOC_015262 (acot11a)


Basic Information

Item Value
gene id XLOC_015262
gene name acot11a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 11028923 ~ 11063878 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030606
TGTTGGTCAACAAACTAAACGACAAACCGCAGGTGTCGACACATTCCGTGCAGTGAGCAAACAAACATAATTTACTTTGACGTTTGTCATTGTTTTGACGTAAGAAAGAAGTATAAAAACAAggacattaagactttttaaagaacaTGTGCAAACATGGAGCAACGGGGCGGGGTCTCAGTGAATGAACACTagctcacagacacacacgcactgCTAAACTAGTTAGTGAACACTACGAGCGGCTGAAGCGGCGTTTTGTTGACCTCTAGGGCGCCGCAGGGCTTCCGTGAACACCGTCAATCCAGTTATGATCATCCAAGAAGGCTTGCTGTTTTGAATTCATACAGACTCCTAAGGCAAGTTTGCGCTCATCATGGCATCATTAGAGTCCAGGCTAAAGGAGGATCTGCATGACCTTCATCTGGAGGATGGAGCTCAGCATCGCAACCCTTCAGAAGTGAAGATGAGCCAGATCGTGTTGCCCTGCCATGCCAACCACTGCGGAGAGCTGAGCGTCGGGCAGCTGCTCAAATGGATGGACTGCACAGCATGTCTGTCTGCCGAGAGACACGCTGGATGTCCCTGTGTGACAGCGTCTGTTGATGACATCTACTTCGAGCACACCATCGGggTTGGACAAGTGGTCAACATTAAAGCCAAAGTCAACAGAGCCTTCAACTCTAGCATGGAGgTGGGGATAGAGGTCAGCTGTGAAGACCTGTACAGGGGCCGTCATTGGAGAGTCTGTCAGGCGTTTGCCACATTTGTCGCCAGACGCACAGATGCAAACAAGGTGCAGCTGAAGCAGGTTGTGCCCTGTACACATCAGGAGCAGCTGGAGCACAGTTTAGCAGCCGAGAGGAGGAGGATGAGACTCGTTCATCATGACACCATGCAGGACTTGCTCAACAACAAAACCTTCCAGAGAAGCTGCAGTGAGGAGAACCGTGATGAAGATGCAGCTGTGCCCACCGAAAGAACAAGAGTGGAGAGTGTGGAGCTGGTACTTCCTCCTCATGCCAATCACCAGGTCAACACATTCGGCGGCCAGATTATGGCCTGGATGGAAAACGTCGCAACTATTGCCGCCAGTCGTTTATGCAATGCTCATCCTACTCTGAGGGCCATAGACATGTTTCACTTCAGAGGCCCTTCTCAGGTCGGAGATCGGTTGATTCTGAAAGCCATTGTCAACAACACCTTCAAGAACAGTATGGAGGTTGGCGTCTGTGCAGAGGCGTATATTGGAGAGGAGCCTCTGAGGCACATTAACAGCGCCTTCATGACATTTGAGGTGCTGGATGACAAAGGAAGGCCACGTCCGCTGCCTTTGATAAAACCTGAACCTAAGGAGGGACAGAGGAGATATCAGGAGGCTCTTGCTAGGAAGAAGATTCGACTTGATAGGAAGTACATCATCTCATGTAAGCAGACCGAGGTGCCACTTTCTGTCCCATGGGACCCCAGTAACCAGGTATACTTGAGCTACAATAATGTGTGGGCCTTAAAAATGCTTGCAGCCAAAAACAACTGGGACCTGATCTCAAAGAAGAACCGTGTGAGTCTGTATACTGTGGAGGAGAGTCAGAGTCTGTGTTTCAAGGTGGAGGCAGAGATGGAGATCCCAGCACAGAGAGCCTTCACCCTTCTCTCAGATCTCAGCCGCAGACAGGAATGGGACGAACACTATACTCGATGTGAACCACTCGTTAAGGTGGATGAAGATGATTTCATCTATCGAGTTATTACTCCTTCAGTCAGTCAAGGAGGAAAAGTTCAGGACTTCATTTTACTGGCGTCTAGAAGGCCTCCCTGTGATAGCGGgGATCCATATGTTATTGCATTAAGATCAGTTACTCTCCCCACTCACCCGCCCACAGAGGGGTTCAACAGGGGGGAGGTGGTCTGTGCCGGCTTCACCATTTATGAGCTGTCACAAGGTGTCTCTAAGATTTCCTACTACAATCAGGCCAGTCCAGAAGTGCTGCCGTACATCTCCACGGACATTGCAGGCCTCTCGTCCAGTTTCTCCTCAACATTCCACTCATGCAGCCAGTACCTGATGGACAACATCATCAGCACACCTGAATTCACCTCACCTACATCATCATAA
>TCONS_00030607
gCTAAACTAGTTAGTGAACACTACGAGCGGCTGAAGCGGCGTTTTGTTGACCTCTAGGGCGCCGCAGGGCTTCCGTGAACACCGTCAATCCAGTTATGATCATCCAAGAAGGCTTGCTGTTTTGAATTCATACAGACTCCTAAGCTCATCATGGCATCATTAGAGTCCAGGCTAAAGGAGGATCTGCATGACCTTCATCTGGAGGATGGAGCTCAGCATCGCAACCCTTCAGAAGTGAAGATGAGCCAGATCGTGTTGCCCTGCCATGCCAACCACTGCGGAGAGCTGAGCGTCGGGCAGCTGCTCAAATGGATGGACTGCACAGCATGTCTGTCTGgTGGGGATAGAGGTCAGCTGTGAAGACCTGTACAGGGGCCGTCATTGGAGAGTCTGTCAGGCGTTTGCCACATTTGTCGCCAGACGCACAGATGCAAACAAG
>TCONS_00030608
gCTAAACTAGTTAGTGAACACTACGAGCGGCTGAAGCGGCGTTTTGTTGACCTCTAGGGCGCCGCAGGGCTTCCGTGAACACCGTCAATCCAGTTATGATCATCCAAGAAGGCTTGCTGTTTTGAATTCATACAGACTCCTAAGGCAAGTTTGCGCTCATCATGGCATCATTAGAGTCCAGGCTAAAGGAGGATCTGCATGACCTTCATCTGGAGGATGGAGCTCAGCATCGCAACCCTTCAGAAGTGAAGATGAGCCAGATCGTGTTGCCCTGCCATGCCAACCACTGCGGAGAGCTGAGCGTCGGGCAGCTGCTCAAATGGATGGACTGCACAGCATGTCTGTCTGCCGAGAGACACGCTGGATGTCCCTGTGTGACAGCGTCTGTTGATGACATCTACTTCGAGCACACCATCGGggTTGGACAAGTGGTCAACATTAAAGCCAAAGTCAACAGAGCCTTCAACTCTAGCATGGAGgTGGGGATAGAGGTCAGCTGTGAAGACCTGTACAGGGGCCGTCATTGGAGAGTCTGTCAGGCGTTTGCCACATTTGTCGCCAGACGCACAGATGCAAACAAGGTGCAGCTGAAGCAGGTTGTGCCCTGTACACATCAGGAGCAGCTGGAGCACAGTTTAGCAGCCGAGAGGAGGAGGATGAGACTCGTTCATCATGACACCATGCAGGACTTGCTCAACAACAAAACCTTCCAGAGAAGCTGCAAGAACCGTGATGAAGATGCAGCTGTGCCCACCGAAAGAACAAGAGTGGAGAGTGTGGAGCTGGTACTTCCTCCTCATGCCAATCACCAGGTCAACACATTCGGCGGCCAGATTATGGCCTGGATGGAAAACGTCGCAACTATTGCCGCCAGTCGTTTATGCAATGCTCATCCTACTCTGAGGGCCATAGACATGTTTCACTTCAGAGGCCCTTCTCAGGTCGGAGATCGGTTGATTCTGAAAGCCATTGTCAACAACACCTTCAAGAACAGTATGGAGGTTGGCGTCTGTGCAGAGGCGTATATTGGAGAGGAGCCTCTGAGGCACATTAACAGCGCCTTCATGACATTTGAGGTGCTGGATGACAAAGGAAGGCCACGTCCGCTGCCTTTGATAAAACCTGAACCTAAGGAGGGACAGAGGAGATATCAGGAGGCTCTTGCTAGGAAGAAGATTCGACTTGATAGGAAGTACATCATCTCATGTAAGCAGACCGAGGTGCCACTTTCTGTCCCATGGGACCCCAGTAACCAGGTATACTTGAGCTACAATAATGTGTGGGCCTTAAAAATGCTTGCAGCCAAAAACAACTGGGACCTGATCTCAAAGAAGAACCGTGTGAGTCTGTATACTGTGGAGGAGAGTCAGAGTCTGTGTTTCAAGGTGGAGGCAGAGATGGAGATCCCAGCACAGAGAGCCTTCACCCTTCTCTCAGATCTCAGCCGCAGACAGGAATGGGACGAACACTATACTCGATGTGAACCACTCGTTAAGGTGGATGAAGATGATTTCATCTATCGAGTTATTACTCCTTCAGTCAGTCAAGGAGGAAAAGTTCAGGACTTCATTTTACTGGCGTCTAGAAGGCCTCCCTGTGATAGCGGgGATCCATATGTTATTGCATTAAGATCAGTTACTCTCCCCACTCACCCGCCCACAGAGGGGTTCAACAGGGGGGAGGTGGTCTGTGCCGGCTTCACCATTTATGAGCTGTCACAAGGTGTCTCTAAGATTTCCTACTACAATCAGGCCAGTCCAGAAGTGCTGCCGTACATCTCCACGGACATTGCAGGCCTCTCGTCCAGTTTCTCCTCAACATTCCACTCATGCAGCCAGTACCTGATGGACAACATCATCAGCACACCTGAATTCACCTCACCTACATCATCATAATCTCCTCGACTCATTAAAAGCGGCCACTTCTAATGCTTTTCTAGAATTTCAGTTTTGCACTTCAAGCTACAGTATGTAACTTATGGAGCTCTTGTGGATACATTGTGTACATGGTCACGGTCACACTAGAGATTAAACTTGCAATATTCTGTTgtatggcactgcgaaaagggtcGGAAGTAAACAagttgattagaca
>TCONS_00030609
CTAGTTAGTGAACACTACGAGCGGCTGAAGCGGCGTTTTGTTGACCTCTAGGGCGCCGCAGGGCTTCCGTGAACACCGTCAATCCAGTTATGATCATCCAAGAAGGCTTGCTGTTTTGAATTCATACAGACTCCTAAGGCAAGTTTGCGCTCATCATGGCATCATTAGAGTCCAGGCTAAAGGAGGATCTGCATGACCTTCATCTGGAGGATGGAGCTCAGCATCGCAACCCTTCAGAAGTGAAGATGAGCCAGATCGTGTTGCCCTGCCATGCCAACCACTGCGGAGAGCTGAGCGTCGGGCAGCTGCTCAAATGGATGGACTGCACAGCATGTCTGTCTGCCGAGAGACACGCTGGATGTCCCTGTGTGACAGCGTCTGTTGATGACATCTACTTCGAGCACACCATCGGggTTGGACAAGTGGTCAACATTAAAGCCAAAGTCAACACATTCGGCGGCCAGATTATGGCCTGGATGGAAAACGTCGCAACTATTGCCGCCAGTCGTTTATGCAATGCTCATCCTACTCTGAGGGCCATAGACATGTTTCACTTCAGAGGCCCTTCTCAGGTCGGAGATCGGTTGATTCTGAAAGCCATTGTCAACAACACCTTCAAGAACAGGTGGGCTTG
>TCONS_00030610
ATCATGGCATCATTAGAGTCCAGGCTAAAGGAGGATCTGCATGACCTTCATCTGGAGGATGGAGCTCAGCATCGCAACCCTTCAGAAGTGAAGATGAGCCAGATCGTGTTGCCCTGCCATGCCAACCACTGCGGAGAGCTGAGCGTCGGGCAGCTGCTCAAATGGATGGACTGCACAGCATGTCTGTCTGCCGAGAGACACGCTGGATGTCCCTGTGTGACAGCGTCTGTTGATGACATCTACTTCGAGCACACCATCGGggTTGGACAAGTGGTCAACATTAAAGCCAAAGTCAACAGAGCCTTCAACTCTAGCATGGAGgTGGGGATAGAGGTCAGCTGTGAAGACCTGTACAGGGGCCGTCATTGGAGAGTCTGTCAGGCGTTTGCCACATTTGTCGCCAGACGCACAGATGCAAACAAGGTGCAGCTGAAGCAGGTTGTGCCCTGTACACATCAGGAGCAGCTGGAGCACAGTTTAGCAGCCGAGAGGAGGAGGATGAGACTCGTTCATCATGACACCATGCAGGACTTGCTCAACAACAAAACCTTCCAGAGAAGCTGCAAGAACCGTGATGAAGATGCAGCTGTGCCCACCGAAAGAACAAGAGTGGAGAGTGTGGAGCTGGTACTTCCTCCTCATGCCAATCACCAGGTCAACACATTCGGCGGCCAGATTATGGCCTGGATGGAAAACGTCGCAACTATTGCCGCCAGTCGTTTATGCAATGCTCATCCTACTCTGAGGGCCATAGACATGTTTCACTTCAGAGGCCCTTCTCAGGTCGGAGATCGGTTGATTCTGAAAGCCATTGTCAACAACACCTTCAAGAACAGTATGGAGGTTGGCGTCTGTGCAGAGGCGTATATTGGAGAGGAGCCTCTGAGGCACATTAACAGCGCCTTCATGACATTTGAGGTGCTGGATGACAAAGGAAGGCCACGTCCGCTGCCTTTGATAAAACCTGAACCTAAGGAGGGACAGAGGAGATATCAGGAGGCTCTTGCTAGGAAGAAGATTCGACTTGATAGGAAGTACATCATCTCATGTAAGCAGACCGAGGTGCCACTTTCTGTCCCATGGGACCCCAGTAACCAGGTATACTTGAGCTACAATAATGTGTGGGCCTTAAAAATGCTTGCAGCCAAAAACAACTGGGACCTGATCTCAAAGAAGAACCGTGTGAGTCTGTATACTGTGGAGGAGAGTCAGAGTCTGTGTTTCAAGGTGGAGGCAGAGATGGAGATCCCAGCACAGAGAGCCTTCACCCTTCTCTCAGATCTCAGCCGCAGACAGGAATGGGACGAACACTATACTCGATGTGAACCACTCGTTAAGGTGGATGAAGATGATTTCATCTATCGAGTTATTACTCCTTCAGTCAGTCAAGGAGGAAAAGTTCAGGACTTCATTTTACTGGCGTCTAGAAGGCCTCCCTGTGATAGCGGgGATCCATATGTTATTGCATTAAGATCAGTTACTCTCCCCACTCACCCGCCCACAGAGGGGTTCAACAGGGGGGAGGTGGTCTGTGCCGGCTTCACCATTTATGAGCTGTCACAAGGTGTCTCTAAGATTTCCTACTACAATCAGGCCAGTCCAGAAGTGCTGCCGTACATCTCCACGGACATTGCAGGCCTCTCGTCCAGTTTCTCCTCAACATTCCACTCATGCAGCCAGTACCTGATGGACAACATCATCAGCACACCTGAATTCACCTCACCTACATCATCATAATCTC
>TCONS_00030611
TGGCATCATTAGAGTCCAGGCTAAAGGAGGATCTGCATGACCTTCATCTGGAGGATGGAGCTCAGCATCGCAACCCTTCAGAAGTGAAGATGAGCCAGATCGTGTTGCCCTGCCATGCCAACCACTGCGGAGAGCTGAGCGTCGGGCAGCTGCTCAAATGGATGGACTGCACAGCATGTCTGTCTGCCGAGAGACACGCTGGATGTCCCTGTGTGACAGCGTCTGTTGATGACATCTACTTCGAGCACACCATCGGggTTGGACAAGTGGTCAACATTAAAGCCAAAGTCAACAGAGCCTTCAACTCTAGCATGGAGgTGGGGATAGAGGTCAGCTGTGAAGACCTGTACAGGGGCCGTCATTGGAGAGTCTGTCAGGCGTTTGCCACATTTGTCGCCAGACGCACAGATGCAAACAAGccacaaccacgactactactactactgatactactacaacaatgactactactactgatactactacaacaatgactactacaGCGTCTACTACAattgatactactacaacaacatctt
>TCONS_00030612
GAGAAGCACTGCTCATGATATTGGCTAcatttaatgaaaatacaatatatagttttatataattttagtttTGTATGCTACTGTTGTTAAGAAAAATAATGTGCCCAACAGattgtgttttaatttttcaGGTATACTTGAGCTACAATAATGTGTGGGCCTTAAAAATGCTTGCAGCCAAAAACAACTGGGACCTGATCTCAAAGAAGAACCGTGTGAGTCTGTATACTGTGGAGGAGAGTCAGAGTCTGTGTTTCAAGGTGGAGGCAGAGATGGAGATCCCAGCACAGAGAGCCTTCACCCTTCTCTCAGATCTCAGCCGCAGACAGGAATGGGACGAACACTATACTCGATGTGAACCACTCGTTAAGGTGGATGAAGATGATTTCATCTATCGAGTTATTACTCCTTCAGTCAGTCAAGGAGGAAAAGTTCAGGACTTCATTTTACTGGCGTCTAGAAGGCCTCCCTGTGATAGCGGgGATCCATATGTTATTGCATTAAGATCAGTTACTCTCCCCACTCACCCGCCCACAGAGGGGTTCAACAGGGGGGAGGTGGTCTGTGCCGGCTTCACCATTTATGAGCTGTCACAAGGTGTCTCTAAGATTTCCTACTACAATCAGGCCAGTCCAGAAGTGCTGCCGTACATCTCCACGGACATTGCAGGCCTCTCGTCCAGTTTCTCCTCAACATTCCACTCATGCAGCCAGTACCTGATGGACAACATCATCAGCACACCTGAATTCACCTCACCTACATCATCATAATCTCCTCGACTCATTAAAAGCGGCCACTTCTAATGCTTTTCTAGAATTTCAGTTTTGCACTTCAAGCTACAGTATGTAACTTATGGAGCTCTTGTGGATACATTGTGTACATGGTCACGGTCACACTAGAGATTAAACTTGCAATATTCTGTTgtatggcactgc

Function

symbol description
acot11a Predicted to enable acyl-CoA hydrolase activity and long-chain fatty acyl-CoA binding activity. Predicted to be involved in acyl-CoA metabolic process and fatty acid metabolic process. Predicted to be active in cytosol. Is expressed in cloaca; lens; proctodeum; and solid lens vesicle. Orthologous to human ACOT11 (acyl-CoA thioesterase 11).

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process
GO:0006637 acyl-CoA metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0036042 long-chain fatty acyl-CoA binding molecular_function
GO:0047617 acyl-CoA hydrolase activity molecular_function
GO:0000062 fatty-acyl-CoA binding molecular_function
GO:0016790 thiolester hydrolase activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-538 Predicted to enable acyl-CoA hydrolase activity and long-chain fatty acyl-CoA binding activity. Predicted to be involved in acyl-CoA metabolic process and fatty acid metabolic process. Predicted to be active in cytosol. Is expressed in cloaca; lens; proctodeum; and solid lens vesicle. Orthologous to human ACOT11 (acyl-CoA thioesterase 11).

Ensembl:

ensembl_id ENSDARG00000058229

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030606 False 2116 mRNA 0.50 16 11028923 11063679
TCONS_00030607 False 439 mRNA 0.53 3 11029138 11039033
TCONS_00030608 False 2094 mRNA 0.50 16 11029138 11063878
TCONS_00030609 False 634 mRNA 0.52 6 11029144 11048165
TCONS_00030610 False 1741 mRNA 0.51 15 11031360 11063683
TCONS_00030611 False 539 mRNA 0.50 5 11031364 11043067
TCONS_00030612 True 935 lncRNA 0.44 5 11055316 11063844
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Neighbor

gene id symbol gene type direction distance location
XLOC_015261 CR450845.1 coding upstream 22133 11006657 ~ 11006790 (+)
XLOC_015260 mrpl37 coding upstream 97153 10914023 ~ 10931770 (+)
XLOC_015259 tceanc2 coding upstream 148374 10878406 ~ 10880549 (+)
XLOC_015258 glmna coding upstream 171025 10821127 ~ 10857898 (+)
XLOC_015257 gfi1aa coding upstream 243057 10766744 ~ 10785866 (+)
XLOC_015263 tyw3 coding downstream 55437 11119315 ~ 11126221 (+)
XLOC_015264 lhx8a coding downstream 141917 11205795 ~ 11210168 (+)
XLOC_015265 BX901918.1 coding downstream 180008 11243886 ~ 11244007 (+)
XLOC_015266 NA coding downstream 565124 11629002 ~ 11633323 (+)
XLOC_015267 BX890600.1 coding downstream 584285 11648163 ~ 11648838 (+)
XLOC_015254 NA non-coding upstream 421594 10604513 ~ 10607329 (+)
XLOC_015253 NA non-coding upstream 464537 10563499 ~ 10564386 (+)
XLOC_015252 BX927121.1 non-coding upstream 612651 10386479 ~ 10416272 (+)
XLOC_015251 NA non-coding upstream 743294 10284761 ~ 10285629 (+)
XLOC_015274 NA non-coding downstream 1572049 12635927 ~ 12637877 (+)
XLOC_015275 BX908750.1 non-coding downstream 1734488 12798366 ~ 12802906 (+)

Expression

Expression of XLOC_015262(acot11a) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Expression of XLOC_015262(acot11a) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Co-expression Network