XLOC_015263 (tyw3)


Basic Information

Item Value
gene id XLOC_015263
gene name tyw3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 11119315 ~ 11126221 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030613
CTGGAGCTTCTGACTTCCGTATGAAAGAGTTTTGTCTGTTTTCGGCCACCGTACTCGACTGTGTACTCAAAACAAAAGCATGCGGTACAGAAATTCCAGCAATCAAAATAATATTCAGAAACCTGAATTAATTACTTGGTTGTTGTAAACATCGGCAGAGATACAAATAATCAGTAGGCTTTTAAAATGGACGGCGATAGCTTTCAGCAATGGAAGAATCAGTGTCTTAATAAGTGTGATTTCAGTAAGAAGGGCAGTGTGGATGAAGACATCTCTCATGTCGTCTCCTTTATTAACAGTCAGGATCGCTATTTTACCACAAGCTCTTGCTCCGGAAGAATCATTCTTTTTGACGCGGTTTCAGATTGCCCTGATGTGCAAAAGCAAAACTGTTCCTGGTTATTTGTCACCCATCAGAAATGCCAAATGGAAGATGTGGTCAGAGGTTTGGAGAAGTCTGTCGGAGATGCTACATTCAAGTTTGAGCCATTTGTGCTTCACGTTCAGTGTAAACAGCTTGAAGATGCACAACTACTGCACACTGTCGCAATAAACTCAGGCTTTAGGAATTCTGGTATAACTGTGGGAAAGAAAGGCAAGATCATCATGGCCGTGCGCAGCACACACTGTCTAGAAGTTCCTCTCAGCCACAGGAGTCACGTCCTCGTCACTCATCAGTACCTCGACTTCCTAGTCGGAGTTGCTAACCAGAAGATGGAAGAAAATCTTAAAAGGATACAGAGATTCTCAGAGTGCCTGCAAGCTGCCCTACAACCTCAAGAAGAAAAATGCAGTTTTAAGGAGGCGGACAACAAAACAGTCTACAGACGAAGGCGGAAACGAACACAGGACGTCTCGGTGACAGACAGTTCCCAAAACACACAAGAACATCATGAAAACACAGAAGAGGAAATTGACTGTGATCTACTGTTTTTATTATAGAAAACCTTCCCTTTCGTCATCTGATCACAATTTATCAACAATACACATTACACCCATTTACTGTGAAGTTCAGTCCTTCAGtcatttttaatgacaaatgtaaaTCAAACACACTTCCTTTGTGATAAGGCGCATCTGCTTCCTGAATAGCTGCCTCATTATTTATAATCCGTTGTAGTTTACACGCCGTCAGTTCAAAGCTTTCGTGTGTGCAAACCTTCATTCTGTAGCTGCTCTAGAAGGAAGATGTTGTCCAGCGATGTCCCTCACAGCTATGTAGAAATGGGCCGTGTTATTCATCTCTGACAAGCAATTTGTCAGGCGTCGCTGTGAAACGCAGTGTGGTTTGGAGCACATTTCCTCAGGATTATAAGGCATCGCTGTGGGGTCGAGTCCTGCAACGGCTCATTTGGGCGACTTGGCTCATTAACAGTCCACTCTTTCTGCCATGAGAAATCAAAAGCAAAATGAAGCAGATGTACAGTTTCATTCATGTTttctttcatgtttttaataaagacaAGACCGACTGTGTTTATCACCAAA

Function

symbol description
tyw3 Predicted to enable tRNA methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within methylation and tRNA processing. Predicted to be active in cytoplasm. Orthologous to human TYW3 (tRNA-yW synthesizing protein 3 homolog).

GO:

id name namespace
GO:0030488 tRNA methylation biological_process
GO:0008033 tRNA processing biological_process
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0008175 tRNA methyltransferase activity molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-040718-355 Predicted to enable tRNA methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within methylation and tRNA processing. Predicted to be active in cytoplasm. Orthologous to human TYW3 (tRNA-yW synthesizing protein 3 homolog).

Ensembl:

ensembl_id ENSDARG00000038222

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030613 True 1488 mRNA 0.42 6 11119315 11126221
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_015262 acot11a coding upstream 55437 11028923 ~ 11063878 (+)
XLOC_015261 CR450845.1 coding upstream 112525 11006657 ~ 11006790 (+)
XLOC_015260 mrpl37 coding upstream 187545 10914023 ~ 10931770 (+)
XLOC_015259 tceanc2 coding upstream 238766 10878406 ~ 10880549 (+)
XLOC_015258 glmna coding upstream 261417 10821127 ~ 10857898 (+)
XLOC_015264 lhx8a coding downstream 79574 11205795 ~ 11210168 (+)
XLOC_015265 BX901918.1 coding downstream 117665 11243886 ~ 11244007 (+)
XLOC_015266 NA coding downstream 502781 11629002 ~ 11633323 (+)
XLOC_015267 BX890600.1 coding downstream 521942 11648163 ~ 11648838 (+)
XLOC_015268 ftr01 coding downstream 544049 11670270 ~ 11677705 (+)
XLOC_015254 NA non-coding upstream 511986 10604513 ~ 10607329 (+)
XLOC_015253 NA non-coding upstream 554929 10563499 ~ 10564386 (+)
XLOC_015252 BX927121.1 non-coding upstream 703043 10386479 ~ 10416272 (+)
XLOC_015251 NA non-coding upstream 833686 10284761 ~ 10285629 (+)
XLOC_015274 NA non-coding downstream 1509706 12635927 ~ 12637877 (+)
XLOC_015275 BX908750.1 non-coding downstream 1672145 12798366 ~ 12802906 (+)

Expression

Expression of XLOC_015263(tyw3) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 125.
End of interactive chart.

Expression of XLOC_015263(tyw3) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_03106070_03109051 NA coding CI01000004 null 3106042 ~ 3109051 (-)