XLOC_015264 (lhx8a)


Basic Information

Item Value
gene id XLOC_015264
gene name lhx8a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 11205795 ~ 11210168 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030614
ACGGAGGAAAACAAAAGTTTGAGTTAAAACATGGTCGCGACGTGCGTTCAGCAGCAGCGGCAGCAGCACCTATATGGATTAATTCTCTCTGTACAGGAGATCTGAGAGTGGATATAGCCTGTCATACTGGACAATGTACTGGAAAAATGAACAAACCACATCGAAAGAGAGCCCAAGCAAGAACACTGCTAAAACTCAAGACCTGTTTGAAGAGGTATCGTGTTCGTCGTCGTTGTCTTTGTCGCCAAGCTCTTCACCTCATACCATGACAAAGAAAGCCATATGTACCAGTTGCGGAACTGAGATTGTAGATAAATATCTCCTCAAGGTGAACGACATGTGCTGGCACGTGAGATGCCTGTCCTGCAGCGTGTGCCAAACATCTCTGGGCAGACACATCAGCTGTTATATAAAAGAAAAGGAGATATTTTGTAAACTGGATTACTTcagGAAATACGGAACACGTTGCGCTCACTGTGGCAGAAACATCCATTCAAACGACTGGGTTCGCAGAGCAAAAGGAAACACCTACCACCTGGCATGTTTTGCTTGCTTCTCCTGCAAGAGGCAGCTGTCTACAGGAGAAGAGTTTGCCCTGGTGGATGAGAGGGTTTTGTGTCGTGTCCACTATGACTGCATGTTGGACAACCTGAAGCGTGCCATGGAGAATGGAAAAGGAGTGAATGTGGAGGGAGCTGTTCCCTCAGAGCAGGAAGTAAATCAGCCTAAACCGGCCAAGAGGGCACGCACAAGTTTTACAGCTGACCAGTTACAGgtgATGCAAGCCCAGTTTGCTCAGGACAACAATCCAGATGCTCAGACTTTACAAAAGTTGGCAGAAAGGACTGGTCTTAGCCGAAGGGTAATTCAGGTTTGGTTCCAAAACTGTCGAGCTCGTCATAAGAAGCATGTCAGCCCGAACCACTCTTCAGCTGCACCAGTGTCATCACTGCAGTCGGCCCATCTCTCTCCTCCACTAATAGATGAACTTCAGTACACTGCTTTTGCCCCTGTGGACACACCAATGCTGACTGCACTACACTCCTACATGGACGTCCACTCTCCCACTTCCCTGGTGCTGCAGCCACTCCTGCCGCACTCGATGACACAGCTGCCCATCAGCCATGCCTGAGACTTCACTGCAGACCCACCGTCAGGTCAGAGGACAGCATGAGGAAATATTGACTGAGTCTTGAACAAGACccatgcttctttctttcatgGGCACTTACTGAAGGATTTGCAAAGATCGAAAAAAACGTTTCAGCTTAATTGTGAGAGTCTgaagtttttgtttaatatatattatattatctataTAGTGATGGAATAAATGGTGTTTAATTTATTTCTTGTATGTGACTGAGcactttgttttaaaataaatctaccATGGATTTCTTAGTTTCTGGTTTAGTCAACACATTTTTGGTTTGTTGTGTGGTGGATCTAAAGAAAATTGGAAGCTGAAGAAAAGgcaataaatttaatttttccACTAGTGTTGA
>TCONS_00030615
tttcttctttttttccacaGAGACAGTCGCTTTTTAGGAGTTTGGATTTAGTTAACATGCTTAAAAAATGTCTGAGTTTggaaagcagaaaaaaacaattacCAACAGGCTACTACTCTTGAATGCGACATAAAACGGTCAATATTACCTGAGGACTTTGAGCACTTGAAAAGGATGACGCCTTGCGTTCAGAATCGCCGGTGTTTTTCGGTGTCTCCTCTCGCTATAGTTAGAGGTTGTCATGGTAAACGGCGAGTGGTCGTTAACGGGTAGCTCGGCCCGGAGGTTAAAAGGCGGCAGCGCTGCCGTGCACTGTGTCTCTCAGAGCTGCTCCTCTCGACATGCCCGCTAGCTGTGGAGGGTCAGTCCTCTGCACACCTCAGGCTAAAACTCAAGACCTGTTTGAAGAGGTATCGTGTTCGTCGTCGTTGTCTTTGTCGCCAAGCTCTTCACCTCATACCATGACAAAGAAAGCCATATGTACCAGTTGCGGAACTGAGATTGTAGATAAATATCTCCTCAAGGTGAACGACATGTGCTGGCACGTGAGATGCCTGTCCTGCAGCGTGTGCCAAACATCTCTGGGCAGACACATCAGCTGTTATATAAAAGAAAAGGAGATATTTTGTAAACTGGATTACTTcagGAAATACGGAACACGTTGCGCTCACTGTGGCAGAAACATCCATTCAAACGACTGGGTTCGCAGAGCAAAAGGAAACACCTACCACCTGGCATGTTTTGCTTGCTTCTCCTGCAAGAGGCAGCTGTCTACAGGAGAAGAGTTTGCCCTGGTGGATGAGAGGGTTTTGTGTCGTGTCCACTATGACTGCATGTTGGACAACCTGAAGCGTGCCATGGAGAATGGAAAAGGAGTGAATGTGGAGGGAGCTGTTCCCTCAGAGCAGGAAGTAAATCAGCCTAAACCGGCCAAGAGGGCACGCACAAGTTTTACAGCTGACCAGTTACAGgtgATGCAAGCCCAGTTTGCTCAGGACAACAATCCAGATGCTCAGACTTTACAAAAGTTGGCAGAAAGGACTGGTCTTAGC
>TCONS_00030616
TTTTGTGGTTTGCTCCAGGAAAAGGAGTGAATGTGGAGGGAGCTGTTCCCTCAGAGCAGGAAGTAAATCAGCCTAAACCGGCCAAGAGGGCACGCACAAGTTTTACAGCTGACCAGTTACAGGTTAATACagcatatttttctttaaaagtatttaaaagacTGGCTgcttgacatttttaaaatttgtatttttttaaatgaaggtgATGCAAGCCCAGTTTGCTCAGGACAACAATCCAGATGCTCAGACTTTACAAAAGTTGGCAGAAAGGACTGGTCTTAGCCGAAGGGTAATTCAGGTTTGGTTCCAAAACTGTCGAGCTCGTCATAAGAAGCATGTCAGCCCGAACCACTCTTCAGCTGCACCAGTGTCATCACTGCAGTCGGCCCATCTCTCTCCTCCACTAATAGATGAACTTCAGTACACTGCTTTTGCCCCTGTGGACACACCAATGCTGACTGCACTACACTCCTACATGGACGGTACAGGTTTTCTTGGATTCAGCATATGCAGCTTTGATAGCATTAATTTTTCATTAGGGGTCATGCATTTTGTATAATTagtaaaactgatttattttaatgtttattttgaacttaAACGCGTCTTAAtgactttatgatttttt

Function

symbol description
lhx8a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in forebrain neuron development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain; dental mesenchyme; and pharynx. Orthologous to human LHX8 (LIM homeobox 8).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030182 neuron differentiation biological_process
GO:0021884 forebrain neuron development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031008-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in forebrain neuron development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain; dental mesenchyme; and pharynx. Orthologous to human LHX8 (LIM homeobox 8).

Ensembl:

ensembl_id ENSDARG00000002330

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030614 False 1508 mRNA 0.45 8 11205795 11210168
TCONS_00030615 False 1052 mRNA 0.48 6 11206317 11208748
TCONS_00030616 True 631 lncRNA 0.41 2 11208463 11209682

Neighbor

gene id symbol gene type direction distance location
XLOC_015263 tyw3 coding upstream 79574 11119315 ~ 11126221 (+)
XLOC_015262 acot11a coding upstream 141917 11028923 ~ 11063878 (+)
XLOC_015261 CR450845.1 coding upstream 199005 11006657 ~ 11006790 (+)
XLOC_015260 mrpl37 coding upstream 274025 10914023 ~ 10931770 (+)
XLOC_015259 tceanc2 coding upstream 325246 10878406 ~ 10880549 (+)
XLOC_015265 BX901918.1 coding downstream 33718 11243886 ~ 11244007 (+)
XLOC_015266 NA coding downstream 418834 11629002 ~ 11633323 (+)
XLOC_015267 BX890600.1 coding downstream 437995 11648163 ~ 11648838 (+)
XLOC_015268 ftr01 coding downstream 460102 11670270 ~ 11677705 (+)
XLOC_015269 greb1l coding downstream 475574 11685742 ~ 11833356 (+)
XLOC_015254 NA non-coding upstream 598466 10604513 ~ 10607329 (+)
XLOC_015253 NA non-coding upstream 641409 10563499 ~ 10564386 (+)
XLOC_015252 BX927121.1 non-coding upstream 789523 10386479 ~ 10416272 (+)
XLOC_015251 NA non-coding upstream 920166 10284761 ~ 10285629 (+)
XLOC_015274 NA non-coding downstream 1425759 12635927 ~ 12637877 (+)
XLOC_015275 BX908750.1 non-coding downstream 1588198 12798366 ~ 12802906 (+)

Expression


Co-expression Network