XLOC_015268 (ftr01)


Basic Information

Item Value
gene id XLOC_015268
gene name ftr01
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 11670270 ~ 11677705 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030619
CACAAGGTAAGATGGCAGAAGCTAGTTTTTCTCAGGACCAGTTCAGCTGCTCAGTGTGTCTGGATATCTTAAAGGGTCCAGTGACCATTCCCTGTGGACACAGTTACTGTATGAGCTGTATTACAGACTGCTGGGATCAGGAGGATCAGAAGCAAGTCTATAGCTGCCCTCAGTGCAGAAACACCTTCACTTCAAGACCTGTGTTGTGTAAGAATGTCTTGATTGATGAGATGGTGAAGAAAGTAAAGAAGACTAACTTACAAACTGCTTGTCCTGCCCATGCTCATGCTGAACCTGGAGATGTGGAGTGTGACGTCTGTCCTGGAAGAAAATATAAAGCTGTCAAGTCATGTGTGGAGTGTCTGAACTCTTACTGCCGAAGCCATCTTGAACAACACGAGAATCTGTTTAAAGACAGGAGACACAATCTATTGGATCCCACTAGACAACTCCATGAGATGATCTGCCCAAAACACGACAAACCACTGGAAATCTACTGTCGTACTGACCTGCAGTGCATTTGTTATCGATGTTTAATGGATGAACATAAAAACCATGAAGCTGTAACAGCTGAAGCTGAGAGGACAGAGAAACAGAAGCTTTTGGGAAGAATCCAAACAAAGTTCAAGCAAGCAATCGAGGCAAGACAGAAGGAGCTGCAGGAGCTAAGAGATGCTGTGAAGTCTTATAAGTGTTCTGCACAGACAGCAGTGGATGATAGTGAAAGGATCTTTACTGAACTCATCCACACCATTGAGAGAAGCCGATCTGAAGTGACACGACTGATCCAAGATCAGGAAAAGGCTGCAGTGAGTGAAGTTGAAAAACTCTCGGAGCAGCTGGAGGAGGAAATTGATGATCTTAGGAGGAGAGACTCTAAGCTGGAGCAGCTTTCACACATAGAAAATCATATTCATTTCCTCCAGATGTTCCAGTATATATCTGAACACCCTAAATCTACAGACACATGTGGCATCACTGTCAGTTCCCTCATCCCTTTTCATGATGTGGTAAAGTCAAtctctaagctgaaggaaaaagagGGTTTCTGTAAAGAAGAGCTAGAAAAGTTCTCTGATAGAGTGACATGCAATGACATGACTCCCATCAGTGAATCAGTTCATACCCGGGAACAGTTTGTCAAGAGTTCCTGTCAGCTCACTCTTGATTCAAAGACAGTGAACCGTTACCTTCGTCTGTCTGAGGGAAACAAAGCAGTCAGTTTCACTGAAACACCCCAGCAGTATCGTGCTCATCCAGAAAGATTTGATGGGAGTTTTCAGGTGTTGTGTAGACAGAGTGTGTCGGAACGCTGTTATTGGGAGGTTGAGTGGAGTGGAATTAatggtgtgtgtatatcagtgtcatataagagcatcagcagAAAGGCATTGTTTAATGAAGATATGTTTGGATTCAATAGTCAGTCCTGGGGTTTGTACTGCTCTCCCTCCAATTACCTATTCATGCACAATAAGAGCAAGACTAAAATCCCTGTGTCCTCCACATCCTCTAGAGTAGGAGTGTATGTGGATCATAGGTCAGGAACTCTGCACTTCTACAGCGTCTCTGAGACTATGGCCCTCATCCATACaatccagaccacattcactcaGCCTCTATACCCTGGGTTTGGCTTAAATATCGGCTCAAATGTGAAACTGTGTCATCTAACAACATAGTAGAGAAATTTGGCATGTTACATGATGTagctttgattatttttattgggAATCTCTCACACAAGCAGTAACAATTGTGTATAATGTGTAAAAACACTAAGGACTGATGTACTGTAGCTTCTACTTACATAATCGTAGTCTGCTGTCGCAAACATGTCAATGTAAAGCTTTAACTAACAGTAGGGGGTGCAATCACTGTTTGTATGTACTGAAACACTGAAGCGggaatttaatttgtaaaataaccaacataggctcattctgaaaatgtagccctatatacatt

Function

symbol description
ftr01 Predicted to enable zinc ion binding activity. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Orthologous to human RNF135 (ring finger protein 135).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-491 Predicted to enable zinc ion binding activity. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Orthologous to human RNF135 (ring finger protein 135).

Ensembl:

ensembl_id ENSDARG00000003909

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030619 True 1968 mRNA 0.43 6 11670270 11677705

Neighbor

gene id symbol gene type direction distance location
XLOC_015267 BX890600.1 coding upstream 21432 11648163 ~ 11648838 (+)
XLOC_015266 NA coding upstream 36947 11629002 ~ 11633323 (+)
XLOC_015265 BX901918.1 coding upstream 426263 11243886 ~ 11244007 (+)
XLOC_015264 lhx8a coding upstream 460102 11205795 ~ 11210168 (+)
XLOC_015263 tyw3 coding upstream 544049 11119315 ~ 11126221 (+)
XLOC_015269 greb1l coding downstream 8037 11685742 ~ 11833356 (+)
XLOC_015270 ro60 coding downstream 245910 11923615 ~ 11945936 (+)
XLOC_015271 cdc73 coding downstream 268849 11946554 ~ 12003175 (+)
XLOC_015272 prtfdc1 coding downstream 577863 12255568 ~ 12280508 (+)
XLOC_015273 arhgap21b coding downstream 624822 12302527 ~ 12406641 (+)
XLOC_015261 CR450845.1 non-coding upstream 663480 11006657 ~ 11006790 (+)
XLOC_015254 NA non-coding upstream 1062941 10604513 ~ 10607329 (+)
XLOC_015274 NA non-coding downstream 958222 12635927 ~ 12637877 (+)
XLOC_015275 BX908750.1 non-coding downstream 1120661 12798366 ~ 12802906 (+)
XLOC_015279 BX511000.1 non-coding downstream 1445861 13123566 ~ 13123682 (+)
XLOC_015280 NA non-coding downstream 1669695 13347400 ~ 13351299 (+)
XLOC_015285 NA non-coding downstream 2272353 13950058 ~ 13958576 (+)

Expression

Expression of XLOC_015268(ftr01) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
End of interactive chart.

Expression of XLOC_015268(ftr01) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
End of interactive chart.

Co-expression Network