XLOC_015268 (ftr01)


Basic Information

Item Value
gene id XLOC_015268
gene name ftr01
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 11670270 ~ 11677705 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030619
CACAAGGTAAGATGGCAGAAGCTAGTTTTTCTCAGGACCAGTTCAGCTGCTCAGTGTGTCTGGATATCTTAAAGGGTCCAGTGACCATTCCCTGTGGACACAGTTACTGTATGAGCTGTATTACAGACTGCTGGGATCAGGAGGATCAGAAGCAAGTCTATAGCTGCCCTCAGTGCAGAAACACCTTCACTTCAAGACCTGTGTTGTGTAAGAATGTCTTGATTGATGAGATGGTGAAGAAAGTAAAGAAGACTAACTTACAAACTGCTTGTCCTGCCCATGCTCATGCTGAACCTGGAGATGTGGAGTGTGACGTCTGTCCTGGAAGAAAATATAAAGCTGTCAAGTCATGTGTGGAGTGTCTGAACTCTTACTGCCGAAGCCATCTTGAACAACACGAGAATCTGTTTAAAGACAGGAGACACAATCTATTGGATCCCACTAGACAACTCCATGAGATGATCTGCCCAAAACACGACAAACCACTGGAAATCTACTGTCGTACTGACCTGCAGTGCATTTGTTATCGATGTTTAATGGATGAACATAAAAACCATGAAGCTGTAACAGCTGAAGCTGAGAGGACAGAGAAACAGAAGCTTTTGGGAAGAATCCAAACAAAGTTCAAGCAAGCAATCGAGGCAAGACAGAAGGAGCTGCAGGAGCTAAGAGATGCTGTGAAGTCTTATAAGTGTTCTGCACAGACAGCAGTGGATGATAGTGAAAGGATCTTTACTGAACTCATCCACACCATTGAGAGAAGCCGATCTGAAGTGACACGACTGATCCAAGATCAGGAAAAGGCTGCAGTGAGTGAAGTTGAAAAACTCTCGGAGCAGCTGGAGGAGGAAATTGATGATCTTAGGAGGAGAGACTCTAAGCTGGAGCAGCTTTCACACATAGAAAATCATATTCATTTCCTCCAGATGTTCCAGTATATATCTGAACACCCTAAATCTACAGACACATGTGGCATCACTGTCAGTTCCCTCATCCCTTTTCATGATGTGGTAAAGTCAAtctctaagctgaaggaaaaagagGGTTTCTGTAAAGAAGAGCTAGAAAAGTTCTCTGATAGAGTGACATGCAATGACATGACTCCCATCAGTGAATCAGTTCATACCCGGGAACAGTTTGTCAAGAGTTCCTGTCAGCTCACTCTTGATTCAAAGACAGTGAACCGTTACCTTCGTCTGTCTGAGGGAAACAAAGCAGTCAGTTTCACTGAAACACCCCAGCAGTATCGTGCTCATCCAGAAAGATTTGATGGGAGTTTTCAGGTGTTGTGTAGACAGAGTGTGTCGGAACGCTGTTATTGGGAGGTTGAGTGGAGTGGAATTAatggtgtgtgtatatcagtgtcatataagagcatcagcagAAAGGCATTGTTTAATGAAGATATGTTTGGATTCAATAGTCAGTCCTGGGGTTTGTACTGCTCTCCCTCCAATTACCTATTCATGCACAATAAGAGCAAGACTAAAATCCCTGTGTCCTCCACATCCTCTAGAGTAGGAGTGTATGTGGATCATAGGTCAGGAACTCTGCACTTCTACAGCGTCTCTGAGACTATGGCCCTCATCCATACaatccagaccacattcactcaGCCTCTATACCCTGGGTTTGGCTTAAATATCGGCTCAAATGTGAAACTGTGTCATCTAACAACATAGTAGAGAAATTTGGCATGTTACATGATGTagctttgattatttttattgggAATCTCTCACACAAGCAGTAACAATTGTGTATAATGTGTAAAAACACTAAGGACTGATGTACTGTAGCTTCTACTTACATAATCGTAGTCTGCTGTCGCAAACATGTCAATGTAAAGCTTTAACTAACAGTAGGGGGTGCAATCACTGTTTGTATGTACTGAAACACTGAAGCGggaatttaatttgtaaaataaccaacataggctcattctgaaaatgtagccctatatacatt

Function

symbol description
ftr01 Predicted to enable zinc ion binding activity. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Orthologous to human RNF135 (ring finger protein 135).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-491 Predicted to enable zinc ion binding activity. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Orthologous to human RNF135 (ring finger protein 135).

Ensembl:

ensembl_id ENSDARG00000003909

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030619 True 1968 mRNA 0.43 6 11670270 11677705

Neighbor

gene id symbol gene type direction distance location
XLOC_015267 BX890600.1 coding upstream 21432 11648163 ~ 11648838 (+)
XLOC_015266 NA coding upstream 36947 11629002 ~ 11633323 (+)
XLOC_015265 BX901918.1 coding upstream 426263 11243886 ~ 11244007 (+)
XLOC_015264 lhx8a coding upstream 460102 11205795 ~ 11210168 (+)
XLOC_015263 tyw3 coding upstream 544049 11119315 ~ 11126221 (+)
XLOC_015269 greb1l coding downstream 8037 11685742 ~ 11833356 (+)
XLOC_015270 ro60 coding downstream 245910 11923615 ~ 11945936 (+)
XLOC_015271 cdc73 coding downstream 268849 11946554 ~ 12003175 (+)
XLOC_015272 prtfdc1 coding downstream 577863 12255568 ~ 12280508 (+)
XLOC_015273 arhgap21b coding downstream 624822 12302527 ~ 12406641 (+)
XLOC_015261 CR450845.1 non-coding upstream 663480 11006657 ~ 11006790 (+)
XLOC_015254 NA non-coding upstream 1062941 10604513 ~ 10607329 (+)
XLOC_015274 NA non-coding downstream 958222 12635927 ~ 12637877 (+)
XLOC_015275 BX908750.1 non-coding downstream 1120661 12798366 ~ 12802906 (+)
XLOC_015279 BX511000.1 non-coding downstream 1445861 13123566 ~ 13123682 (+)
XLOC_015280 NA non-coding downstream 1669695 13347400 ~ 13351299 (+)
XLOC_015285 NA non-coding downstream 2272353 13950058 ~ 13958576 (+)

Expression


Co-expression Network