XLOC_015270 (ro60)


Basic Information

Item Value
gene id XLOC_015270
gene name ro60
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 11923615 ~ 11945936 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030623
TTGGGCTATGTCTCACAACCTAGTACACTGCCTACATAGACGGCGTTTTAAGGAATGAACAGTGTTTTCCGACTCCAAATGAGAATAAACTATCTATATACACCTCAAATTATTATAACCCAAACGTTTAGTCTTAACTAAACAGATGCAGATCACGTTCCAATGCTAGCCAGTGATGTCTACCTAGCAAGGGAACTAGGTTTTGAGCTACAGCCATCGTGTAGTCGGGAATCTTCGCACTGCTCTTCTTCTTTGAGTCTGATTTTAAGGGAGGAGCTGTAACTCTCGGAACATCCAGAGACTTTTGGAGAAGGACAACAACAGGACGGCTAATTATGGATCCAGCATCTCATCCAGAGCAGCTGTCAGTTGTTAACGAACAGGTGCTGAACTCGGCGGACAGATCAGTGACTGCAGCTGTATGTCTGCGCCGCTTCCTCTGCTACGGCTCTGAAAGCTCCACATACAGCACTAAAGAGTGTCCTCTGGGCATCGAGAATGCCCTCTCCTTAATGCAGCTCATCGAGGGGGGTCGTGGGTCTGAGGTGGTAGACGAGGTCAGACGCTTCAATTTGGAGGGCCGCGCTGTCCGTCCAAACCCCGGCCTCTTTACTCTGGCTGTCTGCTCGCAGCATGCAGACTGTAAAACTAGACAGGCCGCTTTACGGGCACTGAAGGAACTCTGCCGGTCCCCCATGCAGCTCTTTACATTCGTGCAGTATAAGAAGGAGTTGAAGGAGGGCTCTGGGATGTGGGGCCGGGCTCTGCGGAGGGTCGTGACTGATTGGTACAATGGTCAGGATGGGATAAGTCTGGCGCAAGCAGTGACCAAGTGCAAGCACAGGGCAGGCTGGTCCCATCAGGACCTCCTCAGACTGTCCCACATGAAGCCTGCTAATGACAACATTGCTCTCGTTTGCAAATACATCACGAAAGGATGGAAAGGGGTTGAGGAAGCATATGCTGAGAAAGACAAATCTGAGGATCTGCAGAAGGTTTTTGCGTATCTGGAAGCTGTTGAAAAAGTCAAACACTCCACTGATGAACAGGAGCTCATTCATCTGATTGAGGAGCAGAGACTGGGGAAAGAGCAGCTTCTCACCAACCATCTCAAGTCCAAAGAGGTTTGGAAAGCATTGCTCAAAGAAATGCCAGTGGCTGTTTTATTGAAGCATTTGGGGAAGTTGACAGCAAACAAAGTTCTTATACCAGGAAGTCCTGACATTGCTGCTGTTTGTGGGAGGATTCAGGAAGAGACTGTTCTGAAAAAGgcCAAAACACAGCCATTCAACATACTTGCAGCGTCTGAAAACTATAAGAGAGGTCACGGGAAGCGTAGCAAGCTGAAATGGGAGCCAGATAGAGACCTTGTTCAAGCACTGGACTGCGCGTTCTGTAAAAGCATTTCAACCATGGAGGCCACAGGCAAGCGGTTTTTGGTGGCTGTTGATATAAGTTCCTCTTTGAGCAGTTTGTGTCGCGGCAGCTCCATCAGCACTGTGGCAGTAGCGGCGGCAGTGTGTATGATAATTGCTCAAACAGAGCCAAACGCGCAGATTGTGGTTTTCTCTGAAGGAAACCTTCTTCCCTGTACTGTCTCTTCTGATATGACATTAATGCAGGTAGCAGGACTGCTAATCCAGACTCCTGGTGGTAGTACAGACTGTTCTTTACCCATCACCTGGGCCTCGGAGAATGAGAAAACTGTGGACGTCTTTATCATTTTAACCAATAATCAAACCTTTGGTAGAGAAAATCCAGCTGACACTCTGAAGATGTATAGACAGaaaagCTCTGTATTTTCAAAACTTGTTGTGTGTGGGTTGATTGCCAACAACCTATCCATCGCTGACCCTGAAGACTGCGGCATGTTGGACATCTGCGGCTTTGACTCGCAAGCAGTGGATGTCATCCATAACTTTGCACTCGACATCTTTTAAAAGCTATTGATTTTGTAGCATGGGTTGTAGATTTTCTGAATGACAAAAAGACATTAATGCACCACCCatcaacatgcaaaaaaaaaaaaacattgtaagcaGGTAATCATGTTGTATGTTTCTACATTTTGGAATCAAGTCTCCAAGTCTAATTCGATATCCAGCAGGCTGGATTAAGTTGCATTGAAAATCAAGGGGTGCACATTTAAGACTTCATtcagtatactgtatattttctAACCTGGTCCTGTGAAATATTTGCTTCTTCCCAAAAAGAGTGTAATCATCTTTTACATGTTTCTTTTTGAAAAGCTCATGCATGTCACTGACCTTCATTGGAAGCAATGTTCTGTATTTTAGAGGCCTTGTTCATTGCGTGTAATATCTTTATGTAATACGATGTTATGAATTATTACATATTGAGCTGAAAGTGCACCATAGGTCTTCCACAAAATCTGAGAGCTGAAATGCATTCGCAGTTTGTCAGTGAAATTGAAATCAAGCAATCTGATTCTCTCAGAAATTGATGTAGCCTAAACTACTAAACTCGTCGGTAAAGTTTTAATGTTGATATACCTCAAGTGTTTTGTGGTCCAGTAACTTGATATATGAGTGAAAATAACCTTTTATATGATTCAAGAGAGACTTCACTGAATATTTTACCGCTTACTCTGGCACATTTTCGAAGTCAATAATGCTACATATGTATGTATtccaaaattgaggaaaaaaagagGTATATGTTTGAATAGAGGAAGTTAATAATGGATCTTGCTTCTAGATTCATTTCTGTTCAgcgttttttatgttttttatttagcattttctaTTGTTCTTTGTGCCTCTTAAGGTCAAATCAAGGTTGTAAGTTTGCTAACGCTGCTAGGATAATAATATCTATGTAATGAATTGTAGGCACAACTAACAAACACTAAAACGTAGACAATGACTGCTTGTTAGTTTTGAGATACAATACTGAATGTACCCTTGTTCTGTTTGTGTAACATTAGATATTATTTAATCGAAACCTTGAAGTATGAGGTAAATAAACGTGACAAATAATGAAA
>TCONS_00030624
ACAGCCATCGTGTAGTCGGGAATCTTCGCACTGCTCTTCTTCTTTGAGTCTGATTTTAAGGGAGGAGCTGTAACTCTCGGAACATCCAGAGACTTTTGGAGAAGGACAACAACAGACATTGCTCTCGTTTGCAAATACATCACGAAAGGATGGAAAGGGGTTGAGGAAGCATATGCTGAGAAAGACAAATCTGAGGATCTGCAGAAGGTTTTTGCGTATCTGGAAGCTGTTGAAAAAGTCAAACACTCCACTGATGAACAGGAGCTCATTCATCTGATTGAGGAGCAGAGACTGGGGAAAGAGCAGCTTCTCACCAACCATCTCAAGTCCAAAGAGGTTTGGAAAGCATTGCTCAAAGAAATGCCAGTGGCTGTTTTATTGAAGCATTTGGGGAAGTTGACAGCAAACAAAGTTCTTATACCAGGAAGTCCTGACATTGCTGCTGTTTGTGGGAGGATTCAGGAAGAGACTGTTCTGAAAAAGgcCAAAACACAGCCATTCAACATACTTGCAGCGTCTGAAAACTATAAGAGAGGTCACGGGAAGCGTAGCAAGCTGAAATGGGAGCCAGATAGAGACCTTGTTCAAGCACTGGACTGCGCGTTCTGTAAAAGCATTTCAACCATGGAGGCCACAGGCAAGCGGTTTTTGGTGGCTGTTGATATAAGTTCCTCTTTGAGCAGTTTGTGTCGCGGCAGCTCCATCAGCACTGTGGCAGTAGCGGCGGCAGTGTGTATGATAATTGCTCAAACAGAGCCAAACGCGCAGATTGTGGTTTTCTCTGAAGGAAACCTTCTTCCCTGTACTGTCTCTTCTGATATGACATTAATGCAGGTAGCAGGACTGCTAATCCAGACTCCTGGTGGTAGTACAGACTGTTCTTTACCCATCACCTGGGCCTCGGAGAATGAGAAAACTGTGGACGTCTTTATCATTTTAACCAATAATCAAACCTTTGGTAGAGAAAATCCAGCTGACACTCTGAAGATGTATAGACAGaaaagCTCTGTATTTTCAAAACTTGTTGTGTGTGGGTTGATTGCCAACAACCTATCCATCGCTGACCCTGAAGACTGCGGCATGTTGGACATCTGCGGCTTTGACTCGCAAGCAGTGGATGTCATCCATAACTTTGCACTCGACATCTTTTAAAAGCTATTGATTTTGTAGCATGGGTTGTAGATTTTCTGAATGACAAAAAGACATTAATGCACCACCCatcaacatgcaaaaaaaaaaaaa

Function

symbol description
ro60 Predicted to enable RNA binding activity. Predicted to be located in cytoplasm. Predicted to be part of ribonucleoprotein complex. Orthologous to human RO60 (Ro60, Y RNA binding protein).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051113-300 Predicted to enable RNA binding activity. Predicted to be located in cytoplasm. Predicted to be part of ribonucleoprotein complex. Orthologous to human RO60 (Ro60, Y RNA binding protein).

Ensembl:

ensembl_id ENSDARG00000089225

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030623 False 3007 mRNA 0.43 9 11923615 11945936
TCONS_00030624 True 1242 mRNA 0.45 8 11923824 11944959

Neighbor

gene id symbol gene type direction distance location
XLOC_015269 greb1l coding upstream 90259 11685742 ~ 11833356 (+)
XLOC_015268 ftr01 coding upstream 245910 11670270 ~ 11677705 (+)
XLOC_015267 BX890600.1 coding upstream 274777 11648163 ~ 11648838 (+)
XLOC_015266 NA coding upstream 290292 11629002 ~ 11633323 (+)
XLOC_015265 BX901918.1 coding upstream 679608 11243886 ~ 11244007 (+)
XLOC_015271 cdc73 coding downstream 618 11946554 ~ 12003175 (+)
XLOC_015272 prtfdc1 coding downstream 309632 12255568 ~ 12280508 (+)
XLOC_015273 arhgap21b coding downstream 356591 12302527 ~ 12406641 (+)
XLOC_015274 NA coding downstream 689991 12635927 ~ 12637877 (+)
XLOC_015275 BX908750.1 coding downstream 852430 12798366 ~ 12802906 (+)
XLOC_015261 CR450845.1 non-coding upstream 916825 11006657 ~ 11006790 (+)
XLOC_015254 NA non-coding upstream 1316286 10604513 ~ 10607329 (+)
XLOC_015279 BX511000.1 non-coding downstream 1177630 13123566 ~ 13123682 (+)
XLOC_015280 NA non-coding downstream 1401464 13347400 ~ 13351299 (+)
XLOC_015285 NA non-coding downstream 2004122 13950058 ~ 13958576 (+)

Expression


Co-expression Network