XLOC_015270 (ro60)


Basic Information

Item Value
gene id XLOC_015270
gene name ro60
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 11923615 ~ 11945936 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030623
TTGGGCTATGTCTCACAACCTAGTACACTGCCTACATAGACGGCGTTTTAAGGAATGAACAGTGTTTTCCGACTCCAAATGAGAATAAACTATCTATATACACCTCAAATTATTATAACCCAAACGTTTAGTCTTAACTAAACAGATGCAGATCACGTTCCAATGCTAGCCAGTGATGTCTACCTAGCAAGGGAACTAGGTTTTGAGCTACAGCCATCGTGTAGTCGGGAATCTTCGCACTGCTCTTCTTCTTTGAGTCTGATTTTAAGGGAGGAGCTGTAACTCTCGGAACATCCAGAGACTTTTGGAGAAGGACAACAACAGGACGGCTAATTATGGATCCAGCATCTCATCCAGAGCAGCTGTCAGTTGTTAACGAACAGGTGCTGAACTCGGCGGACAGATCAGTGACTGCAGCTGTATGTCTGCGCCGCTTCCTCTGCTACGGCTCTGAAAGCTCCACATACAGCACTAAAGAGTGTCCTCTGGGCATCGAGAATGCCCTCTCCTTAATGCAGCTCATCGAGGGGGGTCGTGGGTCTGAGGTGGTAGACGAGGTCAGACGCTTCAATTTGGAGGGCCGCGCTGTCCGTCCAAACCCCGGCCTCTTTACTCTGGCTGTCTGCTCGCAGCATGCAGACTGTAAAACTAGACAGGCCGCTTTACGGGCACTGAAGGAACTCTGCCGGTCCCCCATGCAGCTCTTTACATTCGTGCAGTATAAGAAGGAGTTGAAGGAGGGCTCTGGGATGTGGGGCCGGGCTCTGCGGAGGGTCGTGACTGATTGGTACAATGGTCAGGATGGGATAAGTCTGGCGCAAGCAGTGACCAAGTGCAAGCACAGGGCAGGCTGGTCCCATCAGGACCTCCTCAGACTGTCCCACATGAAGCCTGCTAATGACAACATTGCTCTCGTTTGCAAATACATCACGAAAGGATGGAAAGGGGTTGAGGAAGCATATGCTGAGAAAGACAAATCTGAGGATCTGCAGAAGGTTTTTGCGTATCTGGAAGCTGTTGAAAAAGTCAAACACTCCACTGATGAACAGGAGCTCATTCATCTGATTGAGGAGCAGAGACTGGGGAAAGAGCAGCTTCTCACCAACCATCTCAAGTCCAAAGAGGTTTGGAAAGCATTGCTCAAAGAAATGCCAGTGGCTGTTTTATTGAAGCATTTGGGGAAGTTGACAGCAAACAAAGTTCTTATACCAGGAAGTCCTGACATTGCTGCTGTTTGTGGGAGGATTCAGGAAGAGACTGTTCTGAAAAAGgcCAAAACACAGCCATTCAACATACTTGCAGCGTCTGAAAACTATAAGAGAGGTCACGGGAAGCGTAGCAAGCTGAAATGGGAGCCAGATAGAGACCTTGTTCAAGCACTGGACTGCGCGTTCTGTAAAAGCATTTCAACCATGGAGGCCACAGGCAAGCGGTTTTTGGTGGCTGTTGATATAAGTTCCTCTTTGAGCAGTTTGTGTCGCGGCAGCTCCATCAGCACTGTGGCAGTAGCGGCGGCAGTGTGTATGATAATTGCTCAAACAGAGCCAAACGCGCAGATTGTGGTTTTCTCTGAAGGAAACCTTCTTCCCTGTACTGTCTCTTCTGATATGACATTAATGCAGGTAGCAGGACTGCTAATCCAGACTCCTGGTGGTAGTACAGACTGTTCTTTACCCATCACCTGGGCCTCGGAGAATGAGAAAACTGTGGACGTCTTTATCATTTTAACCAATAATCAAACCTTTGGTAGAGAAAATCCAGCTGACACTCTGAAGATGTATAGACAGaaaagCTCTGTATTTTCAAAACTTGTTGTGTGTGGGTTGATTGCCAACAACCTATCCATCGCTGACCCTGAAGACTGCGGCATGTTGGACATCTGCGGCTTTGACTCGCAAGCAGTGGATGTCATCCATAACTTTGCACTCGACATCTTTTAAAAGCTATTGATTTTGTAGCATGGGTTGTAGATTTTCTGAATGACAAAAAGACATTAATGCACCACCCatcaacatgcaaaaaaaaaaaaacattgtaagcaGGTAATCATGTTGTATGTTTCTACATTTTGGAATCAAGTCTCCAAGTCTAATTCGATATCCAGCAGGCTGGATTAAGTTGCATTGAAAATCAAGGGGTGCACATTTAAGACTTCATtcagtatactgtatattttctAACCTGGTCCTGTGAAATATTTGCTTCTTCCCAAAAAGAGTGTAATCATCTTTTACATGTTTCTTTTTGAAAAGCTCATGCATGTCACTGACCTTCATTGGAAGCAATGTTCTGTATTTTAGAGGCCTTGTTCATTGCGTGTAATATCTTTATGTAATACGATGTTATGAATTATTACATATTGAGCTGAAAGTGCACCATAGGTCTTCCACAAAATCTGAGAGCTGAAATGCATTCGCAGTTTGTCAGTGAAATTGAAATCAAGCAATCTGATTCTCTCAGAAATTGATGTAGCCTAAACTACTAAACTCGTCGGTAAAGTTTTAATGTTGATATACCTCAAGTGTTTTGTGGTCCAGTAACTTGATATATGAGTGAAAATAACCTTTTATATGATTCAAGAGAGACTTCACTGAATATTTTACCGCTTACTCTGGCACATTTTCGAAGTCAATAATGCTACATATGTATGTATtccaaaattgaggaaaaaaagagGTATATGTTTGAATAGAGGAAGTTAATAATGGATCTTGCTTCTAGATTCATTTCTGTTCAgcgttttttatgttttttatttagcattttctaTTGTTCTTTGTGCCTCTTAAGGTCAAATCAAGGTTGTAAGTTTGCTAACGCTGCTAGGATAATAATATCTATGTAATGAATTGTAGGCACAACTAACAAACACTAAAACGTAGACAATGACTGCTTGTTAGTTTTGAGATACAATACTGAATGTACCCTTGTTCTGTTTGTGTAACATTAGATATTATTTAATCGAAACCTTGAAGTATGAGGTAAATAAACGTGACAAATAATGAAA
>TCONS_00030624
ACAGCCATCGTGTAGTCGGGAATCTTCGCACTGCTCTTCTTCTTTGAGTCTGATTTTAAGGGAGGAGCTGTAACTCTCGGAACATCCAGAGACTTTTGGAGAAGGACAACAACAGACATTGCTCTCGTTTGCAAATACATCACGAAAGGATGGAAAGGGGTTGAGGAAGCATATGCTGAGAAAGACAAATCTGAGGATCTGCAGAAGGTTTTTGCGTATCTGGAAGCTGTTGAAAAAGTCAAACACTCCACTGATGAACAGGAGCTCATTCATCTGATTGAGGAGCAGAGACTGGGGAAAGAGCAGCTTCTCACCAACCATCTCAAGTCCAAAGAGGTTTGGAAAGCATTGCTCAAAGAAATGCCAGTGGCTGTTTTATTGAAGCATTTGGGGAAGTTGACAGCAAACAAAGTTCTTATACCAGGAAGTCCTGACATTGCTGCTGTTTGTGGGAGGATTCAGGAAGAGACTGTTCTGAAAAAGgcCAAAACACAGCCATTCAACATACTTGCAGCGTCTGAAAACTATAAGAGAGGTCACGGGAAGCGTAGCAAGCTGAAATGGGAGCCAGATAGAGACCTTGTTCAAGCACTGGACTGCGCGTTCTGTAAAAGCATTTCAACCATGGAGGCCACAGGCAAGCGGTTTTTGGTGGCTGTTGATATAAGTTCCTCTTTGAGCAGTTTGTGTCGCGGCAGCTCCATCAGCACTGTGGCAGTAGCGGCGGCAGTGTGTATGATAATTGCTCAAACAGAGCCAAACGCGCAGATTGTGGTTTTCTCTGAAGGAAACCTTCTTCCCTGTACTGTCTCTTCTGATATGACATTAATGCAGGTAGCAGGACTGCTAATCCAGACTCCTGGTGGTAGTACAGACTGTTCTTTACCCATCACCTGGGCCTCGGAGAATGAGAAAACTGTGGACGTCTTTATCATTTTAACCAATAATCAAACCTTTGGTAGAGAAAATCCAGCTGACACTCTGAAGATGTATAGACAGaaaagCTCTGTATTTTCAAAACTTGTTGTGTGTGGGTTGATTGCCAACAACCTATCCATCGCTGACCCTGAAGACTGCGGCATGTTGGACATCTGCGGCTTTGACTCGCAAGCAGTGGATGTCATCCATAACTTTGCACTCGACATCTTTTAAAAGCTATTGATTTTGTAGCATGGGTTGTAGATTTTCTGAATGACAAAAAGACATTAATGCACCACCCatcaacatgcaaaaaaaaaaaaa

Function

symbol description
ro60 Predicted to enable RNA binding activity. Predicted to be located in cytoplasm. Predicted to be part of ribonucleoprotein complex. Orthologous to human RO60 (Ro60, Y RNA binding protein).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051113-300 Predicted to enable RNA binding activity. Predicted to be located in cytoplasm. Predicted to be part of ribonucleoprotein complex. Orthologous to human RO60 (Ro60, Y RNA binding protein).

Ensembl:

ensembl_id ENSDARG00000089225

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030623 False 3007 mRNA 0.43 9 11923615 11945936
TCONS_00030624 True 1242 mRNA 0.45 8 11923824 11944959
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_015269 greb1l coding upstream 90259 11685742 ~ 11833356 (+)
XLOC_015268 ftr01 coding upstream 245910 11670270 ~ 11677705 (+)
XLOC_015267 BX890600.1 coding upstream 274777 11648163 ~ 11648838 (+)
XLOC_015266 NA coding upstream 290292 11629002 ~ 11633323 (+)
XLOC_015265 BX901918.1 coding upstream 679608 11243886 ~ 11244007 (+)
XLOC_015271 cdc73 coding downstream 618 11946554 ~ 12003175 (+)
XLOC_015272 prtfdc1 coding downstream 309632 12255568 ~ 12280508 (+)
XLOC_015273 arhgap21b coding downstream 356591 12302527 ~ 12406641 (+)
XLOC_015274 NA coding downstream 689991 12635927 ~ 12637877 (+)
XLOC_015275 BX908750.1 coding downstream 852430 12798366 ~ 12802906 (+)
XLOC_015261 CR450845.1 non-coding upstream 916825 11006657 ~ 11006790 (+)
XLOC_015254 NA non-coding upstream 1316286 10604513 ~ 10607329 (+)
XLOC_015279 BX511000.1 non-coding downstream 1177630 13123566 ~ 13123682 (+)
XLOC_015280 NA non-coding downstream 1401464 13347400 ~ 13351299 (+)
XLOC_015285 NA non-coding downstream 2004122 13950058 ~ 13958576 (+)

Expression

Expression of XLOC_015270(ro60) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Expression of XLOC_015270(ro60) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network