XLOC_015272 (prtfdc1)


Basic Information

Item Value
gene id XLOC_015272
gene name prtfdc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 12255568 ~ 12280508 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030627
ACAACAAGCTGTTTTCCTCTCATGATACAGACTCACCCCTCTAGTGTTAGGTGATCTCGTAGAGCTTCAAATGGCGGCCAAATAAACTGTGAGGCTTGCATAATCAACAAGCAACCATGACAAAAGGAATGTTAAAGCGAGTATTTGGGAATTAATATCTGATTTAAGATACATATTAAGCAGAGATGCACGCCAAGCTCCACCACCCAGCCCTGACACCCATCCAGATGACGTCACTTCGGGTGTCGTCATAAACACTACCGATGTGGACGCGAGATTCATTCGGGGTTTGTAAACCAACGAGCTGCAAGAATCCAACATGGCAGGATGGGAACGCAAACAAACAGACGTGGAAAAAGGAATTGTGATCCCAGATGACTGGCCTGGATACCCGCTGGACCTGTTTACATTTCCTGAGCATTACTCCGAGGATCTGGACTGTGTCTACATTCCACACGGTGTTATCATGGACAGgatAGAGAGGTTGGCAAGAAATATCATGGATGATCTTGGGGACCATGACATTGTTGTCCTGTGCGTGCTAAAGGGAGGATATCAGTTCTGTGCTGACCTGGTGGACTGCATTAAAGTCCTGTGTTGCAACTCCAACAAGACCCTTCCCATGAGGGTGGACTTCATACGACTCAAGAGCTACCtgaacgATCAGTCAACCGAAGATCTCCACATAGAAGGGGCAGAGAACCTGTCTGCGCTCAGTGGAaagGCCATTGTGGACACTGGGAAGACCATGAAGGCTCTTCTGGATCACGTTGAAGCCTTCAAGCCTAAGATGATAAAAGTAGCTGGATTGCTGGTGAAAAGAGTGGCCAGTAAGACAGGATATCTGCCAGACTATGTGGGATTTGAGATCTCCAATCGTTTTGTGGTCGGCTATGCCTTGGATTACAATGAATACTTCAGAGACCTCAATCACATCTGTGTGATTAGTGACAGTGGGAAACAGAAATACAAGATCTAAAGAAGAAAGTCCCAGCACTGGAACATGAGCATCTGAATGTCAACTCAGGAAGATAAAAGGTGTCCATGGATCTAAAAGGATGTGTTATTAAGCACTTCCTAGCCTACAAAGATCTCCTATTTTTCCAGTGTTAGATATGAACAGGTTTTACTGGATAAGGTTTTAATTGTGAACTGAGATAAAGCTTACTGAATACTGCACCCTATAGCCTattcacacattttaaacatactaCTGCAGAAATAACATACTATTCCTACTAATATGTATGTTATTTAGTCATTAAAAGAAGGTATAGAAGGAgatgagggtgagcaaatgatgacagaaggaAATTTTTATGAGAACTTTGGGTGTTTTCAATTCACTAAAGGAACTTGTTTAccattaagttaatttaaaatatgttagGCAAGACACTAACTATTCACAAAGTTTGTTTTTCAGAACCTATAAAATGTGAACTACAGAAATAAACCGAATTTTAAGGAATTGTTGCATGTGTACATTAAAGTTTACATTTGTGAGATGTTTTTATACATTTGATAACCTCTTGTAACAACATTAAAATTTTGTGCATTTGTTATATTCgtgtacttctttttttttttacagttatattGTCAAATAGCACAGATGAAAGCATGTCTGTTGGGTTATGGATCATTTGCTGTGGTATTGTTATGGAGATCAGCAGTCATACTTGAGCGAAACAACTCAAACATGCCACACACAAAGGGATGAAGTGGAACAGAGTTTGCTTGGGTGTGTGTTATGTAACCGTGTCTGTTGCTCATTGTTTCCTTTGGCCAGCCTCTTTTGCTCATCTGACTGCTGACTGTGATCAGTGCTGGTGAAttatgtgctgtgtttgtgtCAGATACAGATTCTAGATATTTACCTGCTATGAAAGCACCTTAAAAGGCTTCTGTTTTGCCCCTTTTATCAAAGATGTTTTTATATCTCATATCGCCATAATATGTCTGAAAGTTTAGCTCAAAATTACTATTAGGTCATTTATTATATcctgctaaaaaaaattattattttttttttttgatcggAAGGAATTGTAGCTGTTTtgcgcctgtgcctttaaatgcaaatgagctggttctccccgcccactgtacTGACATATCTGCTTTTCCTGTGTCAAACAAGATAATCACAGAAACAGGCAACCAATGTTGCCAAGAATTGGTCTACTTTTGatctatgttttgttttttcatcctGCGGATTAAAGTTTTGATATATccaaagtttctttgcaaatcctgtcttgACATAATAATACACAA
>TCONS_00030628
GCTGTTTTCCTCTCATGATACAGACTCACCCCTCTAGTGTTAGGTGATCTCGTAGAGCTTCAAATGGCGGCCAAATAAACTGTGAGGCTTGCATAATCAACAAGCAACCATGACAAAAGGAATGTTAAAGCGAGTATTTGGGAATTAATATCTGATTTAAGATACATATTAAGCAGAGATGCACGCCAAGCTCCACCACCCAGCCCTGACACCCATCCAGATGACGTCACTTCGGGTGTCGTCATAAACACTACCGATGTGGACGCGAGATTCATTCGGGGTTTGTAAACCAACGAGCTGCAAGAATCCAACATGGCAGGATGGGAACGCAAACAAACAGACGTGGAAAAAGGAATTGTGATCCCAGATGACTGGCCTGGATACCCGCTGGACCTGTTTACATTTCCTGAGCATTACTCCGAGGATCTGGACTGTGTCTACATTCCACACGGTGTTATCATGGACAGgatAGAGAGGTTGGCAAGAAATATCATGGATGATCTTGGGGACCATGACATTGTTGTCCTGTGCGTGCTAAAGGGAGGATATCAGTTCTGTGCTGACCTGGTGGACTGCATTAAAGTCCTGTGTTGCAACTCCAACAAGACCCTTCCCATGAGGGTGGACTTCATACGACTCAAGAGCTACCtgaacgATCAGTCAACCGAAGATCTCCACATAGAAGGGGCAGAGAACCTGTCTGCGCTCAGTGGAaagAATGTCCTGATAGTGGAGGCCATTGTGGACACTGGGAAGACCATGAAGGCTCTTCTGGATCACGTTGAAGCCTTCAAGCCTAAGATGATAAAAGTAGCTGGATTGCTGGTGAAAAGAGTGGCCAGTAAGACAGGATATCTGCCAGACTATGTGGGATTTGAGATCTCCAATCGTTTTGTGGTCGGCTATGCCTTGGATTACAATGAATACTTCAGAGACCTCAATCACATCTGTGTGATTAGTGACAGTGGGAAACAGAAATACAAGATCTAAAGAAGAAAGTCCCAGCACTGGAACATGAGCATCTGAATGTCAACTCAGGAAGATAAAAGGTGTCCATGGATCTAAAAGGATGTGTTATTAAGCACTTCCTAGCCTACAAAGATCTCCTATTTTTCCAGTGTTAGATATGAACAGGTTTTACTGGATAAGGTTTTAATTGTGAACTGAGATAAAGCTTACTGAATACTGCACCCTATAGCCTattcacacattttaaacatactaCTGCAGAAATAACATACTATTCCTACTAATATGTATGTTATTTAGTCATTAAAAGAAGGTATAGAAGGAgatgagggtgagcaaatgatgacagaaggaAATTTTTATGAGAACTTTGGGTGTTTTCAATTCACTAAAGGAACTTGTTTAccattaagttaatttaaaatatgttagGCAAGACACTAACTATTCACAAAGTTTGTTTTTCAGAACCTATAAAATGTGAACTACAGAAATAAACCGAATTTTAAGGAATTGTTGCATGTGTACATTAAAGTTTACATTTGTGAGATGTTTTTATACATTTGATAACCTCTTGTAACAACATTAAAATTTTGTGCATTTGTTATATTCgtgtacttctttttttttttacagttatattGTCAAATAGCACAGATGAAAGCATGTCTGTTGGGTTATGGATCATTTGCTGTGGTATTGTTATGGAGATCAGCAGTCATACTTGAGCGAAACAACTCAAACATGCCACACACAAAGGGATGAAGTGGAACAGAGTTTGCTTGGGTGTGTGTTATGTAACCGTGTCTGTTGCTCATTGTTTCCTTTGGCCAGCCTCTTTTGCTCATCTGACTGCTGACTGTGATCAGTGCTGGTGAAttatgtgctgtgtttgtgtCAGATACAGATTCTAGATATTTACCTGCTATGAAAGCACCTTAAAAGGCTTCTGTTTTGCCCCTTTTATCAAAGATGTTTTTATATCTCATATCGCCATAATATGTCTGAAAGTTTAGCTCAAAATTACTATTAGGTCATTTATTATATcctgctaaaaaaaattattattttttttttttgatcggAAGGAATTGTAGCTGTTTtgcgcctgtgcctttaaatgcaaatgagctggttctccccgcccactgtacTGACATATCTGCTTTTCCTGTGTCAAACAAGATAATCACAGAAACAGGCAACCAATGTTGCCAAGAATTGGTCTACTTTTGatctatgttttgttttttcatcctGCGGATTAAAGTTTTGATATATccaaa

Function

symbol description
prtfdc1 Enables protein homodimerization activity. Predicted to be involved in purine ribonucleoside salvage.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000011683

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030627 False 2283 mRNA 0.40 8 12255568 12280508
TCONS_00030628 True 2255 mRNA 0.40 9 12255575 12280469

Neighbor

gene id symbol gene type direction distance location
XLOC_015271 cdc73 coding upstream 252393 11946554 ~ 12003175 (+)
XLOC_015270 ro60 coding upstream 309632 11923615 ~ 11945936 (+)
XLOC_015269 greb1l coding upstream 422212 11685742 ~ 11833356 (+)
XLOC_015268 ftr01 coding upstream 577863 11670270 ~ 11677705 (+)
XLOC_015267 BX890600.1 coding upstream 606730 11648163 ~ 11648838 (+)
XLOC_015273 arhgap21b coding downstream 22019 12302527 ~ 12406641 (+)
XLOC_015274 NA coding downstream 355419 12635927 ~ 12637877 (+)
XLOC_015275 BX908750.1 coding downstream 517858 12798366 ~ 12802906 (+)
XLOC_015276 kmt2cb coding downstream 567094 12847602 ~ 13037544 (+)
XLOC_015277 BX324233.1 coding downstream 769717 13050225 ~ 13051517 (+)
XLOC_015266 NA non-coding upstream 622245 11629002 ~ 11633323 (+)
XLOC_015265 BX901918.1 non-coding upstream 1011561 11243886 ~ 11244007 (+)
XLOC_015261 CR450845.1 non-coding upstream 1248778 11006657 ~ 11006790 (+)
XLOC_015254 NA non-coding upstream 1648239 10604513 ~ 10607329 (+)
XLOC_015279 BX511000.1 non-coding downstream 843058 13123566 ~ 13123682 (+)
XLOC_015280 NA non-coding downstream 1066892 13347400 ~ 13351299 (+)
XLOC_015285 NA non-coding downstream 1669550 13950058 ~ 13958576 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_02664483_02667653 PRTFDC1 coding CI01000004 null 2664483 ~ 2667653 (-)