XLOC_015274


Basic Information

Item Value
gene id XLOC_015274
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 12635927 ~ 12637877 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033493
ATTTCAGCCAcgtatgactccagaggagcagacggcaaGCGAGCTGAGACATCCGGCGAGAGCGGATACCTATGAAGTTGGGCCAGTTCTGCAGTGACTTCGCCATCATCACATCCCTCACTGCTGCAGTCAGACTAAAACAGGATGGGGATACATGGCAGTCCATGCCCGAGATACTGGTGATGGAGAGACCACAACAACATCTGGCCCAGATGAGGATACAAGGGCGGGTGGAATGATGCAATGTCTCGTTCACTGCACTACAGAAGgacaggagtgcccaaactcagtccagaACTGCCGCTGCCTTGTAGAGTTTAGTTGAAGTTAACTCTAAACCCTTCAGGACATCAGTCCTCCAGCCCTGCACCCCTCCACTACAGCATCTCCAGGATGTTGCTGTGGACTTTTTTAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033493 True 415 lncRNA 0.52 2 12635927 12637877
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_015273 arhgap21b coding upstream 229286 12302527 ~ 12406641 (+)
XLOC_015272 prtfdc1 coding upstream 355419 12255568 ~ 12280508 (+)
XLOC_015271 cdc73 coding upstream 632752 11946554 ~ 12003175 (+)
XLOC_015270 ro60 coding upstream 689991 11923615 ~ 11945936 (+)
XLOC_015269 greb1l coding upstream 802571 11685742 ~ 11833356 (+)
XLOC_015275 BX908750.1 coding downstream 160489 12798366 ~ 12802906 (+)
XLOC_015276 kmt2cb coding downstream 209725 12847602 ~ 13037544 (+)
XLOC_015277 BX324233.1 coding downstream 412348 13050225 ~ 13051517 (+)
XLOC_015278 prkag2b coding downstream 418925 13056802 ~ 13148453 (+)
XLOC_015279 BX511000.1 coding downstream 485689 13123566 ~ 13123682 (+)
XLOC_015267 BX890600.1 non-coding upstream 987089 11648163 ~ 11648838 (+)
XLOC_015266 NA non-coding upstream 1002604 11629002 ~ 11633323 (+)
XLOC_015265 BX901918.1 non-coding upstream 1391920 11243886 ~ 11244007 (+)
XLOC_015261 CR450845.1 non-coding upstream 1629137 11006657 ~ 11006790 (+)
XLOC_015254 NA non-coding upstream 2028598 10604513 ~ 10607329 (+)
XLOC_015280 NA non-coding downstream 709523 13347400 ~ 13351299 (+)
XLOC_015285 NA non-coding downstream 1312181 13950058 ~ 13958576 (+)
XLOC_015286 NA non-coding downstream 1323252 13961129 ~ 13962397 (+)

Expression

Expression of XLOC_015274 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.

Co-expression Network