XLOC_015275 (BX908750.1)


Basic Information

Item Value
gene id XLOC_015275
gene name BX908750.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 12798366 ~ 12802906 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030635
TAGTGAGAGAACATTTTGTCCTCTTTTAAGTGTGCTTGCATGAGAAGCAGAAGTGTCtgtggttttttgtgtgtgtgtgcatcggaGGTCTGAAGGTCAACGTCTGGTTTCGGTCTTGCAGACAGCTCCCACACTGGAAAGTCCCcgctatatatacatttcttctTTATTCTGTTTGTATAACATGCCCATATTAAGAGTGTCTTCCTTCTTCTGTATAACTTTTAAAGGTCAGCCCACTATGTATATATGTCCCTGCCCATCCTGTATTTGTCAggcttgcagaataaaccattctaactacagtttggtctcttctcatgtctccgggtcgacctgctgaactttgctgaatctggtgcctaatATAGGGGAATCTTACAGACTTGGGGGCTTCGTCCGGGATACATCTGATCAGACTCTCTTTGTTTTACAGATTTTGGGGGCCCCCACATCAGCTAGCACCTCCACGCAGCATAACTACTAGAAGGATCAGCATGAAGTGGCTATGGACATTGGGACTGTTTCTCTTTCTTGTTGCTCAAGCTAATGCAGCCAGGCTGAAACGCTGGACACATGATCATGAATTTGGATGGGCAGAGGATGGGGCTGACAATCCAATTGAAATAATATGTGGTATCAATATGTAAATGAGTTTTAGCTAGGTCATATAATGTATCTGGTTGTTATGTATGTTCTGTTATGCCTCATTCAGCCAAACAAACCCCTCTTTATGCCAAACCCATGAATAAGACCTCTGCTAAATGTTTTGCCAGTTTTGCAGGATCAGGGTACCAGGACCCATATATAATTGTCGATGACTACGATCCATACCGGATTGGCATTGGAAATGGTACATGTGATGCTCTATTTTGGGTAAAATTTGGCCACGCTAAACCCGCACCTATTAGCCACAAGGTTTTTATTAACCATTCTATTACACACCCTGTGTGTTATAACCAGACCATGGGCTCTCATTTCATGGGAAGCACTGTTAACTGTCAACAAATTGCCTCCTCGGGAGAAGGGGCCCCAGTTTATGTGTCAGGACCCTCAAACGGCACTTATGTGGTCCAGGGTGGGTGGTGGTTGTGTGGAAAAAACGCCTACATGTCCCTACCGGCCAACTGGACGGGGCAGTGTGCCCCTGTGCATGTGACTGATCACACTTTTATTGTGACAGCCCAGGTCCTGTCAGCGCAGCGAAGAGTTAAACGCAGTGTCCCTGAAATGAAGCCCCATGACTCTGTATGGGGTACTGACGTGCCCGAGGATTTTAAATTATGGACCACTGGTAACAAAGTGGTATTGGCTCTATTTCCGCAAATAGGTGTGGGAAAAGCTCTACTAAGAATTGAGACCCTGGACTATCGCATGGGCCTATTCCTGAATGcctcaaaaataattaatgaggcCCAGAATAAGGAGCTGGGTAATCTACGTACCATGGTTTTGCAAAATAGAATGGCTCTAGATCTCTTAACAGCATCCCAGGGGGAGGTATGTAAATGAGTACTGCTATGTCTACTCTCCAAGGGTTAAAAATTGCCATGACTTCAGATTATGTTCCCGACACAACTTGGGGTTAGATGATGGGTCTGTTCGGCTGGGTAACTCCTTTCCTTACTATGATAATTcctgtatgtattattttccttCTTGTTTGTTGTTGTGGTCCTTTTCTCTTGCAATGTTTAATGAATCGAATCTATGCCACAATGGACAGTATGATGGGTCAACGATATGATAAGATTCCTCTGTGTTAGGCCTTTGGCCTAAAAGAGGGGACTGAGAGAACATTTTGTCCTCTTTTAAGTGTGCTTCCATGAGAAGCAGAAGTGTCtgtggttttttgtgtgtgtgtgcatcggaGGTCTGAAGGTCAACGTCTGGTTTCGGTCTTGCAGACAGCTCCCACACTGGAAAGTCCCcgctatatatacatttcttctTTACTCTGTTTGTATAACATGCCCATATTAAGAGTGTCTTCCTTCTTCTGTATAACTTTTAAAGGTCAGCCCACTATGTATATATGTCCCTGCCCATCCTGTATTTGTCAggcttgcagaataaaccattctaactaca

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009314 response to radiation biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0045161 neuronal ion channel clustering biological_process
GO:0045162 clustering of voltage-gated sodium channels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0042551 neuron maturation biological_process
GO:0009416 response to light stimulus biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0071478 cellular response to radiation biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0044441 obsolete ciliary part cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0005416 amino acid molecular_function
GO:0015185 gamma-aminobutyric acid transmembrane transporter activity molecular_function
GO:0022804 active transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0019842 vitamin binding molecular_function
GO:0009881 photoreceptor activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function
GO:0140161 monocarboxylate molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0005283 amino acid molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0008028 monocarboxylic acid transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0005332 gamma-aminobutyric acid molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097553

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030635 True 2091 lncRNA 0.44 2 12798366 12802906

Neighbor

gene id symbol gene type direction distance location
XLOC_015274 NA coding upstream 160489 12635927 ~ 12637877 (+)
XLOC_015273 arhgap21b coding upstream 391725 12302527 ~ 12406641 (+)
XLOC_015272 prtfdc1 coding upstream 517858 12255568 ~ 12280508 (+)
XLOC_015271 cdc73 coding upstream 795191 11946554 ~ 12003175 (+)
XLOC_015270 ro60 coding upstream 852430 11923615 ~ 11945936 (+)
XLOC_015276 kmt2cb coding downstream 44696 12847602 ~ 13037544 (+)
XLOC_015277 BX324233.1 coding downstream 247319 13050225 ~ 13051517 (+)
XLOC_015278 prkag2b coding downstream 253896 13056802 ~ 13148453 (+)
XLOC_015279 BX511000.1 coding downstream 320660 13123566 ~ 13123682 (+)
XLOC_015280 NA coding downstream 544494 13347400 ~ 13351299 (+)
XLOC_015267 BX890600.1 non-coding upstream 1149528 11648163 ~ 11648838 (+)
XLOC_015266 NA non-coding upstream 1165043 11629002 ~ 11633323 (+)
XLOC_015265 BX901918.1 non-coding upstream 1554359 11243886 ~ 11244007 (+)
XLOC_015261 CR450845.1 non-coding upstream 1791576 11006657 ~ 11006790 (+)
XLOC_015285 NA non-coding downstream 1147152 13950058 ~ 13958576 (+)
XLOC_015286 NA non-coding downstream 1158223 13961129 ~ 13962397 (+)
XLOC_015287 NA non-coding downstream 1417122 14220028 ~ 14220637 (+)

Expression


Co-expression Network