XLOC_015275 (BX908750.1)


Basic Information

Item Value
gene id XLOC_015275
gene name BX908750.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 12798366 ~ 12802906 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030635
TAGTGAGAGAACATTTTGTCCTCTTTTAAGTGTGCTTGCATGAGAAGCAGAAGTGTCtgtggttttttgtgtgtgtgtgcatcggaGGTCTGAAGGTCAACGTCTGGTTTCGGTCTTGCAGACAGCTCCCACACTGGAAAGTCCCcgctatatatacatttcttctTTATTCTGTTTGTATAACATGCCCATATTAAGAGTGTCTTCCTTCTTCTGTATAACTTTTAAAGGTCAGCCCACTATGTATATATGTCCCTGCCCATCCTGTATTTGTCAggcttgcagaataaaccattctaactacagtttggtctcttctcatgtctccgggtcgacctgctgaactttgctgaatctggtgcctaatATAGGGGAATCTTACAGACTTGGGGGCTTCGTCCGGGATACATCTGATCAGACTCTCTTTGTTTTACAGATTTTGGGGGCCCCCACATCAGCTAGCACCTCCACGCAGCATAACTACTAGAAGGATCAGCATGAAGTGGCTATGGACATTGGGACTGTTTCTCTTTCTTGTTGCTCAAGCTAATGCAGCCAGGCTGAAACGCTGGACACATGATCATGAATTTGGATGGGCAGAGGATGGGGCTGACAATCCAATTGAAATAATATGTGGTATCAATATGTAAATGAGTTTTAGCTAGGTCATATAATGTATCTGGTTGTTATGTATGTTCTGTTATGCCTCATTCAGCCAAACAAACCCCTCTTTATGCCAAACCCATGAATAAGACCTCTGCTAAATGTTTTGCCAGTTTTGCAGGATCAGGGTACCAGGACCCATATATAATTGTCGATGACTACGATCCATACCGGATTGGCATTGGAAATGGTACATGTGATGCTCTATTTTGGGTAAAATTTGGCCACGCTAAACCCGCACCTATTAGCCACAAGGTTTTTATTAACCATTCTATTACACACCCTGTGTGTTATAACCAGACCATGGGCTCTCATTTCATGGGAAGCACTGTTAACTGTCAACAAATTGCCTCCTCGGGAGAAGGGGCCCCAGTTTATGTGTCAGGACCCTCAAACGGCACTTATGTGGTCCAGGGTGGGTGGTGGTTGTGTGGAAAAAACGCCTACATGTCCCTACCGGCCAACTGGACGGGGCAGTGTGCCCCTGTGCATGTGACTGATCACACTTTTATTGTGACAGCCCAGGTCCTGTCAGCGCAGCGAAGAGTTAAACGCAGTGTCCCTGAAATGAAGCCCCATGACTCTGTATGGGGTACTGACGTGCCCGAGGATTTTAAATTATGGACCACTGGTAACAAAGTGGTATTGGCTCTATTTCCGCAAATAGGTGTGGGAAAAGCTCTACTAAGAATTGAGACCCTGGACTATCGCATGGGCCTATTCCTGAATGcctcaaaaataattaatgaggcCCAGAATAAGGAGCTGGGTAATCTACGTACCATGGTTTTGCAAAATAGAATGGCTCTAGATCTCTTAACAGCATCCCAGGGGGAGGTATGTAAATGAGTACTGCTATGTCTACTCTCCAAGGGTTAAAAATTGCCATGACTTCAGATTATGTTCCCGACACAACTTGGGGTTAGATGATGGGTCTGTTCGGCTGGGTAACTCCTTTCCTTACTATGATAATTcctgtatgtattattttccttCTTGTTTGTTGTTGTGGTCCTTTTCTCTTGCAATGTTTAATGAATCGAATCTATGCCACAATGGACAGTATGATGGGTCAACGATATGATAAGATTCCTCTGTGTTAGGCCTTTGGCCTAAAAGAGGGGACTGAGAGAACATTTTGTCCTCTTTTAAGTGTGCTTCCATGAGAAGCAGAAGTGTCtgtggttttttgtgtgtgtgtgcatcggaGGTCTGAAGGTCAACGTCTGGTTTCGGTCTTGCAGACAGCTCCCACACTGGAAAGTCCCcgctatatatacatttcttctTTACTCTGTTTGTATAACATGCCCATATTAAGAGTGTCTTCCTTCTTCTGTATAACTTTTAAAGGTCAGCCCACTATGTATATATGTCCCTGCCCATCCTGTATTTGTCAggcttgcagaataaaccattctaactaca

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009314 response to radiation biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0045161 neuronal ion channel clustering biological_process
GO:0045162 clustering of voltage-gated sodium channels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0042551 neuron maturation biological_process
GO:0009416 response to light stimulus biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0071478 cellular response to radiation biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0044441 obsolete ciliary part cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0005416 amino acid molecular_function
GO:0015185 gamma-aminobutyric acid transmembrane transporter activity molecular_function
GO:0022804 active transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0019842 vitamin binding molecular_function
GO:0009881 photoreceptor activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function
GO:0140161 monocarboxylate molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0005283 amino acid molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0008028 monocarboxylic acid transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0005332 gamma-aminobutyric acid molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097553

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030635 True 2091 lncRNA 0.44 2 12798366 12802906
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_015274 NA coding upstream 160489 12635927 ~ 12637877 (+)
XLOC_015273 arhgap21b coding upstream 391725 12302527 ~ 12406641 (+)
XLOC_015272 prtfdc1 coding upstream 517858 12255568 ~ 12280508 (+)
XLOC_015271 cdc73 coding upstream 795191 11946554 ~ 12003175 (+)
XLOC_015270 ro60 coding upstream 852430 11923615 ~ 11945936 (+)
XLOC_015276 kmt2cb coding downstream 44696 12847602 ~ 13037544 (+)
XLOC_015277 BX324233.1 coding downstream 247319 13050225 ~ 13051517 (+)
XLOC_015278 prkag2b coding downstream 253896 13056802 ~ 13148453 (+)
XLOC_015279 BX511000.1 coding downstream 320660 13123566 ~ 13123682 (+)
XLOC_015280 NA coding downstream 544494 13347400 ~ 13351299 (+)
XLOC_015267 BX890600.1 non-coding upstream 1149528 11648163 ~ 11648838 (+)
XLOC_015266 NA non-coding upstream 1165043 11629002 ~ 11633323 (+)
XLOC_015265 BX901918.1 non-coding upstream 1554359 11243886 ~ 11244007 (+)
XLOC_015261 CR450845.1 non-coding upstream 1791576 11006657 ~ 11006790 (+)
XLOC_015285 NA non-coding downstream 1147152 13950058 ~ 13958576 (+)
XLOC_015286 NA non-coding downstream 1158223 13961129 ~ 13962397 (+)
XLOC_015287 NA non-coding downstream 1417122 14220028 ~ 14220637 (+)

Expression

Expression of XLOC_015275(BX908750.1) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Expression of XLOC_015275(BX908750.1) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Co-expression Network