XLOC_015278 (prkag2b)


Basic Information

Item Value
gene id XLOC_015278
gene name prkag2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 13056802 ~ 13148453 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030639
GATTTATATTTAACTCATATGAGCTTTTGCAAAATTCGCATTACCTACGGCGATTTGATATGTAGCCTGGCATTGAATAAGTTAGAGATTGTATAAAATTCTTCAGTACAaagaataattctgactgcagaAAAAATGGGAAGTACAGTGATGGACTCCAAGGAGAAGGATTGTGCAAAGAAATTCTCTAAGAAAAAGCGATCCCTGCGCCTTAAAATGCCAGATATGACCACATTTACATCTTCTCTTATGGATGGAGAGACTGACAGATCAGATAAAAACAAAGTgggaaagGTTGACACAAGTGACTCAGCTAGTCTATGTTCAAGGTCTGCTGCTATCTGCCAACCCCATACTCCCATACATCCTAGCACCAGTCCAGGCTCTCCAAAAAACATCTTTCACCGTTCATTATCTTCACACCAGGAGTCACCTCCCAAGTCTCCCCACCGTCTCAGTTTCAGTGGTATCTTCCGCTCCTCTTCCAGCTCAGCCCCTACCAGCATCAAGCTCTTTTCCAGATCAAGAAAAGGTTCTGGGCTTTCAAGTCCTCCCACCACCCCAACACAGAGTCCAGTTCCACCGGTCTTTGCTATGGAGACATGCAGTCATGTTGAGCAAGTGGAGGAACGATGCTCCCGCTCACTCTCATCTACCCCTGACACAGGTCAGCGCTTCAGCCTGAGCCCCTCCACCACCAAACCCCCTATCGCCTTGTACACCCTTAACTCTACCTCACGCCAGagCTGCACACTTACTGAAGGCCTGCTGGAAAAACTTGAACTTGACAATGAagCTGCTGAAGAGCCAGACAGTGACATTTACATGCACTTCATGATGTCCCACAAGTGCTATGACCTCATCCCTACCAGTTCCAAACTAGTGGTCTTTGACACTACATTACAGGTAAAGAAAGCCTTTTTTGCCTTGGTTGCCAATGGAGTTCGAGCTGCCCCATTATGGGAAACTAAAACGCAAAGCTTTGTGGgAATGTTAACAATCACAGACTTCATCATAATTCTGCACAGATACTACAAATCACCACTTGTGCAAATATATGCGCTGGAGGAGCATAAAATTGAGACTTGGAGAGAACTTTACTTGCAAGAAACATTTAAACCCTTAGTCAACATATCTCCAAATGCAAAtatattcaatgctGTTTACTCACTGATAAAAAATAAGATTCATCGTTTGCCAGTGATCGACCCGGTCACAGGAAATGCCTTGTATATCCTCACGCACAAGAGAATCCTGAAGTTTCTTCAGCTCTTTGTGTGTGAGATGCCTAAACCAGCCTTCATGAAGCAGACCCTGGTGGAGCTGGGCATTGGCACATACAGCAACATTGCCTACATTCACCCAGATACGCCCATTATTAAAGCGCTGGGCATGTTTGTGGAGAGGAGAGTATCTGCCCTGCCAGTTGTGGATGTTACtgGAAAGGTTGTGGACATTTACTCCAAATTTGATGTCATTAACCTGGCTGCTGAGAAGACATACAATAACCTGGACATCACAGTGACTCAAGCTCTGCTGCATCGCTCGCAATACTTTGAAGGAGTTATGAAGTGTTACCGGCATGAGACATTAGAGACTATTGTGGACAGGATCGTCAAAGCTGAGGTGCACAGACTGGTAGTCGTGGATGATAATTCCAGCATTGAGGGCATCATCTCCCTTTCTGACATTCTGCAGGCGCTGGTACTCACCCCCGCAGcaggaCACACAAGATGAGTGAGTGACAAGACAACATTTTGTAGATGAATGAAAAATCATCATCATAGATCATCATTCCTAGCCAGATTCAGAGAAGAGGACAACTGTAGGTGTTCTATATCCTGATATAAGGACTGAAGTTGTGGTGGATTGAACGAAAGCATTAGAATCTGCAGCTGAAGGAACTGATGTGATCACAAAGCTCACAATATTGGACATGTTTATGGTTGGCCAGTGGTGTTAATGTGTCGCTGTGCAAACTGTGCTGTGCTGATGGTTGAGAGCCCCTCACGTAATCAGGCACAGTGAGGAACCAGACACTGAATCTACTTTTAGTTAAGTGTCTGAACTTGTAAACTATCTTAACTGagaattgattataaagcttagCAGAGACTCATATGGGTGTGTAGGTTGTGG
>TCONS_00030640
gcgagcaccgcattaacaagCTGGaacccagacatgcaacgcagtgctcgtgcccatcatccgggggCAGGAAACCACTCTAGTCTATGTTCAAGGTCTGCTGCTATCTGCCAACCCCATACTCCCATACATCCTAGCACCAGTCCAGGCTCTCCAAAAAACATCTTTCACCGTTCATTATCTTCACACCAGGAGTCACCTCCCAAGTCTCCCCACCGTCTCAGTTTCAGTGGTATCTTCCGCTCCTCTTCCAGCTCAGCCCCTACCAGCATCAAGCTCTTTTCCAGATCAAGAAAAGGTTCTGGGCTTTCAAGTCCTCCCACCACCCCAACACAGAGTCCAGTTCCACCGGTCTTTCAAGTGGAGGAACGATGCTCCCGCTCACTCTCATCTACCCCTGACACAGGTCAGCGCTTCAGCCTGAGCCCCTCCACCACCAAACCCCCTATCGCCTTGTACACCCTTAACTCTACCTCACGCCAGagCTGCACACTTACTGAAGGCCTGCTGGAAAAACTTGAACTTGACAATGAagAGCCAGACAGTGACATTTACATGCACTTCATGATGTCCCACAAGTGCTATGACCTCATCCCTACCAGTTCCAAACTAGTGGTCTTTGACACTACATTACAGGTAAAGAAAGCCTTTTTTGCCTTGGTTGCCAATGGAGTTCGAGCTGCCCCATTATGGGAAACTAAAACGCAAAGCTTTGTGGgAATGTTAACAATCACAGACTTCATCATAATTCTGCACAGATACTACAAATCACCACTTGTGCAAATATATGCGCTGGAGGAGCATAAAATTGAGACTTGGAGAGAACTTTACTTGCAAGAAACATTTAAACCCTTAGTCAACATATCTCCAAATGCAAAtatattcaatgctGTTTACTCACTGATAAAAAATAAGATTCATCGTTTGCCAGTGATCGACCCGGTCACAGGAAATGCCTTGTATATCCTCACGCACAAGAGAATCCTGAAGTTTCTTCAGCTCTTTGTGTGTGAGATGCCTAAACCAGCCTTCATGAAGCAGACCCTGGTGGAGCTGGGCATTGGCACATACAGCAACATTGCCTACATTCACCCAGATACGCCCATTATTAAAGCGCTGGGCATGTTTGTGGAGAGGAGAGTATCTGCCCTGCCAGTTGTGGATGTTACtgGAAAGGTTGTGGACATTTACTCCAAATTTGATGTCATTAACCTGGCTGCTGAGAAGACATACAATAACCTGGACATCACAGTGACTCAAGCTCTGCTGCATCGCTCGCAATACTTTGAAGGAGTTATGAAGTGTTACCGGCATGAGACATTAGAGACTATTGTGGACAGGATCGTCAAAGCTGAGGTGCACAGACTGGTAGTCGTGGATGATAATTCCAGCATTGAGGGCATCATCTCCCTTTCTGACATTCTGCAGGCGCTGGTACTCACCCCCGCAGGTATAGACGCTCAGAATTCCTAA

Function

symbol description
prkag2b Predicted to enable AMP binding activity; protein kinase binding activity; and protein kinase regulator activity. Predicted to be involved in cellular response to glucose starvation; protein phosphorylation; and regulation of catalytic activity. Predicted to act upstream of or within regulation of protein serine/threonine kinase activity. Predicted to be part of nucleotide-activated protein kinase complex. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in Wolff-Parkinson-White syndrome; glycogen storage disease; hypertrophic cardiomyopathy 6; and lethal congenital glycogen storage disease of heart. Orthologous to human PRKAG2 (protein kinase AMP-activated non-catalytic subunit gamma 2).

GO:

id name namespace
GO:0042149 cellular response to glucose starvation biological_process
GO:0071900 regulation of protein serine/threonine kinase activity biological_process
GO:0006468 protein phosphorylation biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0031588 nucleotide-activated protein kinase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019887 protein kinase regulator activity molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0016208 AMP binding molecular_function
GO:0004679 AMP-activated protein kinase activity molecular_function
GO:0032559 adenyl ribonucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-442 Predicted to enable AMP binding activity; protein kinase binding activity; and protein kinase regulator activity. Predicted to be involved in cellular response to glucose starvation; protein phosphorylation; and regulation of catalytic activity. Predicted to act upstream of or within regulation of protein serine/threonine kinase activity. Predicted to be part of nucleotide-activated protein kinase complex. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in Wolff-Parkinson-White syndrome; glycogen storage disease; hypertrophic cardiomyopathy 6; and lethal congenital glycogen storage disease of heart. Orthologous to human PRKAG2 (protein kinase AMP-activated non-catalytic subunit gamma 2).

Ensembl:

ensembl_id ENSDARG00000001933

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030639 False 2139 mRNA 0.44 16 13056802 13148453
TCONS_00030640 True 1473 mRNA 0.48 15 13069168 13145704

Neighbor

gene id symbol gene type direction distance location
XLOC_015277 BX324233.1 coding upstream 5285 13050225 ~ 13051517 (+)
XLOC_015276 kmt2cb coding upstream 19258 12847602 ~ 13037544 (+)
XLOC_015275 BX908750.1 coding upstream 253896 12798366 ~ 12802906 (+)
XLOC_015274 NA coding upstream 418925 12635927 ~ 12637877 (+)
XLOC_015273 arhgap21b coding upstream 650161 12302527 ~ 12406641 (+)
XLOC_015280 NA coding downstream 198947 13347400 ~ 13351299 (+)
XLOC_015281 cfap57 coding downstream 313852 13462305 ~ 13673494 (+)
XLOC_015282 ebna1bp2 coding downstream 545997 13694450 ~ 13721149 (+)
XLOC_015283 zbtb41 coding downstream 573435 13721888 ~ 13800596 (+)
XLOC_015284 cpdp coding downstream 758999 13907452 ~ 13940917 (+)
XLOC_015267 BX890600.1 non-coding upstream 1407964 11648163 ~ 11648838 (+)
XLOC_015266 NA non-coding upstream 1423479 11629002 ~ 11633323 (+)
XLOC_015265 BX901918.1 non-coding upstream 1812795 11243886 ~ 11244007 (+)
XLOC_015285 NA non-coding downstream 801605 13950058 ~ 13958576 (+)
XLOC_015286 NA non-coding downstream 812676 13961129 ~ 13962397 (+)
XLOC_015287 NA non-coding downstream 1071575 14220028 ~ 14220637 (+)
XLOC_015288 NA non-coding downstream 1176603 14325056 ~ 14332878 (+)

Expression


Co-expression Network