XLOC_015278 (prkag2b)


Basic Information

Item Value
gene id XLOC_015278
gene name prkag2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 13056802 ~ 13148453 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030639
GATTTATATTTAACTCATATGAGCTTTTGCAAAATTCGCATTACCTACGGCGATTTGATATGTAGCCTGGCATTGAATAAGTTAGAGATTGTATAAAATTCTTCAGTACAaagaataattctgactgcagaAAAAATGGGAAGTACAGTGATGGACTCCAAGGAGAAGGATTGTGCAAAGAAATTCTCTAAGAAAAAGCGATCCCTGCGCCTTAAAATGCCAGATATGACCACATTTACATCTTCTCTTATGGATGGAGAGACTGACAGATCAGATAAAAACAAAGTgggaaagGTTGACACAAGTGACTCAGCTAGTCTATGTTCAAGGTCTGCTGCTATCTGCCAACCCCATACTCCCATACATCCTAGCACCAGTCCAGGCTCTCCAAAAAACATCTTTCACCGTTCATTATCTTCACACCAGGAGTCACCTCCCAAGTCTCCCCACCGTCTCAGTTTCAGTGGTATCTTCCGCTCCTCTTCCAGCTCAGCCCCTACCAGCATCAAGCTCTTTTCCAGATCAAGAAAAGGTTCTGGGCTTTCAAGTCCTCCCACCACCCCAACACAGAGTCCAGTTCCACCGGTCTTTGCTATGGAGACATGCAGTCATGTTGAGCAAGTGGAGGAACGATGCTCCCGCTCACTCTCATCTACCCCTGACACAGGTCAGCGCTTCAGCCTGAGCCCCTCCACCACCAAACCCCCTATCGCCTTGTACACCCTTAACTCTACCTCACGCCAGagCTGCACACTTACTGAAGGCCTGCTGGAAAAACTTGAACTTGACAATGAagCTGCTGAAGAGCCAGACAGTGACATTTACATGCACTTCATGATGTCCCACAAGTGCTATGACCTCATCCCTACCAGTTCCAAACTAGTGGTCTTTGACACTACATTACAGGTAAAGAAAGCCTTTTTTGCCTTGGTTGCCAATGGAGTTCGAGCTGCCCCATTATGGGAAACTAAAACGCAAAGCTTTGTGGgAATGTTAACAATCACAGACTTCATCATAATTCTGCACAGATACTACAAATCACCACTTGTGCAAATATATGCGCTGGAGGAGCATAAAATTGAGACTTGGAGAGAACTTTACTTGCAAGAAACATTTAAACCCTTAGTCAACATATCTCCAAATGCAAAtatattcaatgctGTTTACTCACTGATAAAAAATAAGATTCATCGTTTGCCAGTGATCGACCCGGTCACAGGAAATGCCTTGTATATCCTCACGCACAAGAGAATCCTGAAGTTTCTTCAGCTCTTTGTGTGTGAGATGCCTAAACCAGCCTTCATGAAGCAGACCCTGGTGGAGCTGGGCATTGGCACATACAGCAACATTGCCTACATTCACCCAGATACGCCCATTATTAAAGCGCTGGGCATGTTTGTGGAGAGGAGAGTATCTGCCCTGCCAGTTGTGGATGTTACtgGAAAGGTTGTGGACATTTACTCCAAATTTGATGTCATTAACCTGGCTGCTGAGAAGACATACAATAACCTGGACATCACAGTGACTCAAGCTCTGCTGCATCGCTCGCAATACTTTGAAGGAGTTATGAAGTGTTACCGGCATGAGACATTAGAGACTATTGTGGACAGGATCGTCAAAGCTGAGGTGCACAGACTGGTAGTCGTGGATGATAATTCCAGCATTGAGGGCATCATCTCCCTTTCTGACATTCTGCAGGCGCTGGTACTCACCCCCGCAGcaggaCACACAAGATGAGTGAGTGACAAGACAACATTTTGTAGATGAATGAAAAATCATCATCATAGATCATCATTCCTAGCCAGATTCAGAGAAGAGGACAACTGTAGGTGTTCTATATCCTGATATAAGGACTGAAGTTGTGGTGGATTGAACGAAAGCATTAGAATCTGCAGCTGAAGGAACTGATGTGATCACAAAGCTCACAATATTGGACATGTTTATGGTTGGCCAGTGGTGTTAATGTGTCGCTGTGCAAACTGTGCTGTGCTGATGGTTGAGAGCCCCTCACGTAATCAGGCACAGTGAGGAACCAGACACTGAATCTACTTTTAGTTAAGTGTCTGAACTTGTAAACTATCTTAACTGagaattgattataaagcttagCAGAGACTCATATGGGTGTGTAGGTTGTGG
>TCONS_00030640
gcgagcaccgcattaacaagCTGGaacccagacatgcaacgcagtgctcgtgcccatcatccgggggCAGGAAACCACTCTAGTCTATGTTCAAGGTCTGCTGCTATCTGCCAACCCCATACTCCCATACATCCTAGCACCAGTCCAGGCTCTCCAAAAAACATCTTTCACCGTTCATTATCTTCACACCAGGAGTCACCTCCCAAGTCTCCCCACCGTCTCAGTTTCAGTGGTATCTTCCGCTCCTCTTCCAGCTCAGCCCCTACCAGCATCAAGCTCTTTTCCAGATCAAGAAAAGGTTCTGGGCTTTCAAGTCCTCCCACCACCCCAACACAGAGTCCAGTTCCACCGGTCTTTCAAGTGGAGGAACGATGCTCCCGCTCACTCTCATCTACCCCTGACACAGGTCAGCGCTTCAGCCTGAGCCCCTCCACCACCAAACCCCCTATCGCCTTGTACACCCTTAACTCTACCTCACGCCAGagCTGCACACTTACTGAAGGCCTGCTGGAAAAACTTGAACTTGACAATGAagAGCCAGACAGTGACATTTACATGCACTTCATGATGTCCCACAAGTGCTATGACCTCATCCCTACCAGTTCCAAACTAGTGGTCTTTGACACTACATTACAGGTAAAGAAAGCCTTTTTTGCCTTGGTTGCCAATGGAGTTCGAGCTGCCCCATTATGGGAAACTAAAACGCAAAGCTTTGTGGgAATGTTAACAATCACAGACTTCATCATAATTCTGCACAGATACTACAAATCACCACTTGTGCAAATATATGCGCTGGAGGAGCATAAAATTGAGACTTGGAGAGAACTTTACTTGCAAGAAACATTTAAACCCTTAGTCAACATATCTCCAAATGCAAAtatattcaatgctGTTTACTCACTGATAAAAAATAAGATTCATCGTTTGCCAGTGATCGACCCGGTCACAGGAAATGCCTTGTATATCCTCACGCACAAGAGAATCCTGAAGTTTCTTCAGCTCTTTGTGTGTGAGATGCCTAAACCAGCCTTCATGAAGCAGACCCTGGTGGAGCTGGGCATTGGCACATACAGCAACATTGCCTACATTCACCCAGATACGCCCATTATTAAAGCGCTGGGCATGTTTGTGGAGAGGAGAGTATCTGCCCTGCCAGTTGTGGATGTTACtgGAAAGGTTGTGGACATTTACTCCAAATTTGATGTCATTAACCTGGCTGCTGAGAAGACATACAATAACCTGGACATCACAGTGACTCAAGCTCTGCTGCATCGCTCGCAATACTTTGAAGGAGTTATGAAGTGTTACCGGCATGAGACATTAGAGACTATTGTGGACAGGATCGTCAAAGCTGAGGTGCACAGACTGGTAGTCGTGGATGATAATTCCAGCATTGAGGGCATCATCTCCCTTTCTGACATTCTGCAGGCGCTGGTACTCACCCCCGCAGGTATAGACGCTCAGAATTCCTAA

Function

symbol description
prkag2b Predicted to enable AMP binding activity; protein kinase binding activity; and protein kinase regulator activity. Predicted to be involved in cellular response to glucose starvation; protein phosphorylation; and regulation of catalytic activity. Predicted to act upstream of or within regulation of protein serine/threonine kinase activity. Predicted to be part of nucleotide-activated protein kinase complex. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in Wolff-Parkinson-White syndrome; glycogen storage disease; hypertrophic cardiomyopathy 6; and lethal congenital glycogen storage disease of heart. Orthologous to human PRKAG2 (protein kinase AMP-activated non-catalytic subunit gamma 2).

GO:

id name namespace
GO:0042149 cellular response to glucose starvation biological_process
GO:0071900 regulation of protein serine/threonine kinase activity biological_process
GO:0006468 protein phosphorylation biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0031588 nucleotide-activated protein kinase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019887 protein kinase regulator activity molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0016208 AMP binding molecular_function
GO:0004679 AMP-activated protein kinase activity molecular_function
GO:0032559 adenyl ribonucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-442 Predicted to enable AMP binding activity; protein kinase binding activity; and protein kinase regulator activity. Predicted to be involved in cellular response to glucose starvation; protein phosphorylation; and regulation of catalytic activity. Predicted to act upstream of or within regulation of protein serine/threonine kinase activity. Predicted to be part of nucleotide-activated protein kinase complex. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in Wolff-Parkinson-White syndrome; glycogen storage disease; hypertrophic cardiomyopathy 6; and lethal congenital glycogen storage disease of heart. Orthologous to human PRKAG2 (protein kinase AMP-activated non-catalytic subunit gamma 2).

Ensembl:

ensembl_id ENSDARG00000001933

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030639 False 2139 mRNA 0.44 16 13056802 13148453
TCONS_00030640 True 1473 mRNA 0.48 15 13069168 13145704
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Neighbor

gene id symbol gene type direction distance location
XLOC_015277 BX324233.1 coding upstream 5285 13050225 ~ 13051517 (+)
XLOC_015276 kmt2cb coding upstream 19258 12847602 ~ 13037544 (+)
XLOC_015275 BX908750.1 coding upstream 253896 12798366 ~ 12802906 (+)
XLOC_015274 NA coding upstream 418925 12635927 ~ 12637877 (+)
XLOC_015273 arhgap21b coding upstream 650161 12302527 ~ 12406641 (+)
XLOC_015280 NA coding downstream 198947 13347400 ~ 13351299 (+)
XLOC_015281 cfap57 coding downstream 313852 13462305 ~ 13673494 (+)
XLOC_015282 ebna1bp2 coding downstream 545997 13694450 ~ 13721149 (+)
XLOC_015283 zbtb41 coding downstream 573435 13721888 ~ 13800596 (+)
XLOC_015284 cpdp coding downstream 758999 13907452 ~ 13940917 (+)
XLOC_015267 BX890600.1 non-coding upstream 1407964 11648163 ~ 11648838 (+)
XLOC_015266 NA non-coding upstream 1423479 11629002 ~ 11633323 (+)
XLOC_015265 BX901918.1 non-coding upstream 1812795 11243886 ~ 11244007 (+)
XLOC_015285 NA non-coding downstream 801605 13950058 ~ 13958576 (+)
XLOC_015286 NA non-coding downstream 812676 13961129 ~ 13962397 (+)
XLOC_015287 NA non-coding downstream 1071575 14220028 ~ 14220637 (+)
XLOC_015288 NA non-coding downstream 1176603 14325056 ~ 14332878 (+)

Expression

Expression of XLOC_015278(prkag2b) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.

Expression of XLOC_015278(prkag2b) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.

Co-expression Network