XLOC_015280


Basic Information

Item Value
gene id XLOC_015280
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 13347400 ~ 13351299 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033243
TGACTTATGAAGAATTTTTATCACACTTTAATtttcctgcactgtaaaaaatccaacttgcAAATTGCTAACTCAAATCAAAATTGTAAGTTGGGTGGACATATTTTGAGCCCAGTGTTgagtttacttttaaaaatgagttaactGAAGGTTTAAAACTGGTTTGTTCAATGAAAGTAAATACTTAAGTTGAGCAGACTTTACATTTTGAGTTCTTCACTGGATCATCTACTTCCCGTCTTTGCACATGCTCAGTCTGTCTTCGGGTGCCATTTTGCACGAGGTGTCCTCTCACCAGCAGCAGCTGCCATCTCCTGATTCAGgtTTGGAATGCAGTGTAAGTTTTGCAAATTTGTAAACAGTAGCTGAGAAGTTACACTACAGACTACATCGCTATCAAGGACCATCCTGGCAGCAGCCTTGTTTGTTCGCAGACTGCTTCTGCACTTTAAAGACTCTGATGTCCGAAAACAGTGGCCTGCATGTTTTTGAGAGTTCAGGTCTATGCTGAGTTTTACAGGATTACTCAAACCAACCTCAAAGATATCTTCTCTTTTTCGGATGAATACGCTATCAAGTTTTATGGATCATGTGGTGGGCGATATGGAGAGATAATAAGAACCGCCCTGGACCAACTGGACAATCAAGACACAGAGCCAGAAGATACTTGCACAATAGAGATGGAGATGGACATCCTTAGCACTGTTGAAGATGATGTTGCCACTCTTCAGACCAACCTAAATGTAAGGTGCCTGTCTGTGGTTCTGGAAGAGCAAATCGTGCTGGAAAAGATCTTCCGACAGCTGTTGTTCTCCTCTTTGGTTTGATTAATTTCCTCATTATGAACTACCCCAAAGAACTGAAACACATCTTTGAAACTATTCAGAAAGTGTTTATTGGCCTTGAATGCATTTGTTTGTACACTGAAATAGTGTTACTCTTGGTGTTGTCACCAAActtaaattcagttttgattttacattttcaaattttaaaaacatccatttcccaccAATTGATAGATTGGCTGTTGTGTTCAAGCgctcaacataaatgactgtgattggctgagaagtTCACCATTTCACTGCTCTTCACTGATGTTCATGGAGTgcaacacagatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacttgtgtcaGCTTATACACAGACCAGTTGATCAATGTGAAATTCttaagtgtccctgtatctgtggttacactcagtaaacagcagtgagtttggtgaactgatgatcttcacGCCCAATCAgtcttttctgttgagcatgtgaacacaatggcaatatAACAGTGTTTAAAACATGGTCAAcaacgctcaaatgttagcaggaaatggacgtttttaaaattataGAACTGATgggtaacaaaattaaaatatcgtGACAAAACTAATTACTCTTgcactttgaaaaaaatgttgatagtgcaagcattttaaatattacttttgctTAACTCGAGCACTTAAAAGGCAATATAGGATTTGAGGATTTACCTTTTTGTTGCCTCTTTTCCTTCTCTGGACTGCAGTACATTTCATTTGG
>TCONS_00033494
AATTGCTAACTCAAATCAAAATTGTAAGTTGGGTGGACATATTTTGAGCCCAGTGTTgagtttacttttaaaaatgagttaactGAAGGTTTAAAACTGGTTTGTTCAATGAAAGTAAATACTTAAGTTGAGCAGACTTTACATTTTGAGTTCTTCACTGGATCATCTACTTCCCGTCTTTGCACATGCTCAGTCTGTCTTCGGGTGCCATTTTGCACGAGGTGTCCTCTCACCAGCAGCAGCTGCCATCTCCTGATTCAGGTAAGCTTTGTTTTAGCTTTATTGTCAAAATTAATCTAAATAGCGTGCAAAtctaaagtaaaatgtaatgttatgttcCCAAAAAACTAAGTTACATCGTGTGAAGATCATTTCTGACAAGCTCGGGCTAACAAGCTAGCCACCTGTGAAGTTTGCTTCATTTGAAGGACTGTTTAACGTTAATTTGCTTCTTAAACTGGAGGGAAATGTAGTGAAATATTGTTGTTGCAAACAGACATATCTGAGCGGCCGGTCACCACTGTATTGTTAACCCTGTTGTGTCTGTATTAAAACAGCAATGCGATAacattaaaaccacttcaaaataATATTTAGCATACAACTTTAAATATACAGTCACTAGAAGTGTACATATAGTATTCCAGGAGCTTgtggtttttatgattatttatttggcATACATTAACCATTTATGAGTTAAgtaacatgtatgtatgtattatttaaatcttctctttttatgtttgcaatatttattttatattgtgctttttaaaaacatcagtttaatttatgaaaacaatttgacctgcaatgttacatttttatttacttttttataggtTTGGAATGCAGTGTAAGTTTTGCAAATTTGTAAACAGTAGCTGAGAAGTTACACTACAGACTACATCGCTATCAAGGACCATCCTGGCAGCAGCCTTGTTTGTTCGCAGACTGCTTCTGCACTTTAAAGACTGTAGGTGCATTAAAATCACATTTGACATTAGCACATTAACAGTCTGCTGCAGTTACTgactatttgatttttttaacctCCTGTAGCTGATGTCCGAAAACAGTGGCCTGCATGTTTTTGAGAGTTCAGGCAAGTTTGCATTTgagattgtttattaaaatgtataaccattgttcacaattcatactattcatttttttatggtCTGTTTGTAGGTCTATGCTGAGTTTTACAGGATTACTCAAACCAACCTCAAAGATATCTTCTCTTTTTCGGATGAATACGCTATCAAGTTTTATGGATCATGTGGTGGGCGATATGGAGAGATAATAAGAACCGCCCTGGACCAACTGGACAATCAAGTAATTATTTAGCATTCAATCATATCACTGATTAAAGGGGGGCATATTAAACTTTATGGAGTTTACCATGGAGTTTCTCTTTTTGTGTGCAATATTGGAATTCATGCAGGTAATTAATCTTTGAAGTTACAAAACAGTTTGTTCCCTAAAAGAAAAGTTTGTAGCACTGTTTTCACCTCTGTAAAGGATGCTACATTTTCATCACTTAGTCTTTAGTAGAACAACCATGACTGAGTCCGGCTGACCAGGGAGTGAAAACAGGTGCtgcaacaataattataaagcaaatttcatttttaataattaaaacatgttgGGAATTTCTGATCAAAATGACTAACCTGTGAATAACCATAATTAATGCCCTTCAATTGTAAAGTGGTGCCACCTGTCATCTCTCAGGGGTCTGAGCATCTGGTTTAATGTGACAATAGCTGATGacctatggcaagccgttttaacttttattctatAGCCCGTGCTAGTATCTATTTTCTTGTTACTAGTACTTATCCATTTTCTTAGTTCTTTTCCATTAAGTACtaactagtacttatttattagatactagtacttaattattagttactagtacttatttattagatactagtacttatttattagttactagtacttatttattagatactagttcttatttattagatactagttcttatttattagatactagttcttatttattagatactagttcttatttattagatactagtacttaattattagttactagtacttttttattagttactagtacttaattattagttactagtacttatttattagttactagtacttatttattagatactagtacttattaaatagatactagttcttatttattagttactagtacttattttaatagtgactagtaactattctgttgttactcgtaatgaattaaaaattttccCATTCATTTCTATGGGATCTCTAATTGAGATATcaactattcagttttgactagtatgtaTTCCAGCTGTGACTAGTGCATATTTTTATCTACTAGTAGTTAATCATTAGGTACTAGTACCTATTACTGAGATGCTACTACCTaattaatagatactagtacttatgtattagatactagtccttattcattaggtactagtatctatttaatagatactagtacttatttattagatactagtacttattaaatagcttactaatgtttattcatgtagagttgatgcttaacagataatcaattcactatttgctaatgcttaataaatgattcattattataaaagtgttacctgaaatgttttataaatagaaGGTATATAAATGACTGTGTTACTGACATTACTACCTTCAGTTTCCAAATTAAGTTGCtttgccttttcttttttttaccttGCTTTTTGGAGATGTTTGTGATTTAGCAGTAAAAATAGTTTTTCATCctctttttatgtttctttttactGCAGGACACAGAGCCAGAAGATACTTGCACAATAGAGATGGAGATGGACATCCTTAGCACTGTTGAAGATGATGTTGCCACTCTTCAGACCAACCTAAATGTAAGGTGCCTGTCTGTGGTTCTGGAAGAGCAAATCGTGCTGGAAAAGATCTTCCGACAGCTGTTGTTCTCCTCTTTGGTTTGATTAATTTCCTCATTATGAACTACCCCAAAGAACTGAAACACATCTTTGAAACTATTCAGAAAGTGTTTATTGGCCTTGAATGCATTTGTTTGTACACTGAAATAGTGTTACTCTTGGTGTTGTCACCAAActtaaattcagttttgattttacattttcaaattttaaaaacatccatttcccaccAATTGATAGATTGGCTGTTGTGTTCAAGCgctcaacataaatgactgtgattggctgagaagtTCACCATTTCACTGCTCTTCACTGATGTTCATGGAGTgcaacacagatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacttgtgtcaGCTTATACACAGACCAGTTGATCAATGTGAAATTCttaagtgtccctgtatctgtggttacactcagtaaacagcagtgagtttggtgaactgatgatcttcacGCCCAATCAgtcttttctgttgagcatgtgaacacaatggcaatatAACAGTGTTTAAAACATGGTCAAcaacgctcaaatgttagcaggaaatggacgtttttaaaattataGAACTGATgggtaacaaaattaaaatatcgtGACAAAACTAATTACTCTTgcactttgaaaaaaatgttgatagtgcaagcattttaaatattacttttgctTAACTCGAGCACTTAAAAGGCAATATAGGATTTGAGGATTTACCTTTTTGTTGCCTCTTTTCCTTCTCTGGACTGCAGTACATTTCATTTGGACAGAAAACTGTTTGCAGAATTGTCAATAAATATAttctttgtatata

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0007389 pattern specification process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033243 False 1615 lncRNA 0.39 5 13347400 13351251
TCONS_00033494 True 3838 lncRNA 0.33 1 13347462 13351299
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Neighbor

gene id symbol gene type direction distance location
XLOC_015278 prkag2b coding upstream 198947 13056802 ~ 13148453 (+)
XLOC_015279 BX511000.1 coding upstream 223718 13123566 ~ 13123682 (+)
XLOC_015277 BX324233.1 coding upstream 295883 13050225 ~ 13051517 (+)
XLOC_015276 kmt2cb coding upstream 309856 12847602 ~ 13037544 (+)
XLOC_015275 BX908750.1 coding upstream 544494 12798366 ~ 12802906 (+)
XLOC_015281 cfap57 coding downstream 111006 13462305 ~ 13673494 (+)
XLOC_015282 ebna1bp2 coding downstream 343151 13694450 ~ 13721149 (+)
XLOC_015283 zbtb41 coding downstream 370589 13721888 ~ 13800596 (+)
XLOC_015284 cpdp coding downstream 556153 13907452 ~ 13940917 (+)
XLOC_015285 NA coding downstream 598759 13950058 ~ 13958576 (+)
XLOC_015274 NA non-coding upstream 709523 12635927 ~ 12637877 (+)
XLOC_015267 BX890600.1 non-coding upstream 1698562 11648163 ~ 11648838 (+)
XLOC_015266 NA non-coding upstream 1714077 11629002 ~ 11633323 (+)
XLOC_015286 NA non-coding downstream 609830 13961129 ~ 13962397 (+)
XLOC_015287 NA non-coding downstream 868729 14220028 ~ 14220637 (+)
XLOC_015288 NA non-coding downstream 973757 14325056 ~ 14332878 (+)
XLOC_015289 NA non-coding downstream 1150759 14502058 ~ 14506622 (+)

Expression

Expression of XLOC_015280 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
End of interactive chart.

Co-expression Network