XLOC_015280


Basic Information

Item Value
gene id XLOC_015280
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 13347400 ~ 13351299 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033243
TGACTTATGAAGAATTTTTATCACACTTTAATtttcctgcactgtaaaaaatccaacttgcAAATTGCTAACTCAAATCAAAATTGTAAGTTGGGTGGACATATTTTGAGCCCAGTGTTgagtttacttttaaaaatgagttaactGAAGGTTTAAAACTGGTTTGTTCAATGAAAGTAAATACTTAAGTTGAGCAGACTTTACATTTTGAGTTCTTCACTGGATCATCTACTTCCCGTCTTTGCACATGCTCAGTCTGTCTTCGGGTGCCATTTTGCACGAGGTGTCCTCTCACCAGCAGCAGCTGCCATCTCCTGATTCAGgtTTGGAATGCAGTGTAAGTTTTGCAAATTTGTAAACAGTAGCTGAGAAGTTACACTACAGACTACATCGCTATCAAGGACCATCCTGGCAGCAGCCTTGTTTGTTCGCAGACTGCTTCTGCACTTTAAAGACTCTGATGTCCGAAAACAGTGGCCTGCATGTTTTTGAGAGTTCAGGTCTATGCTGAGTTTTACAGGATTACTCAAACCAACCTCAAAGATATCTTCTCTTTTTCGGATGAATACGCTATCAAGTTTTATGGATCATGTGGTGGGCGATATGGAGAGATAATAAGAACCGCCCTGGACCAACTGGACAATCAAGACACAGAGCCAGAAGATACTTGCACAATAGAGATGGAGATGGACATCCTTAGCACTGTTGAAGATGATGTTGCCACTCTTCAGACCAACCTAAATGTAAGGTGCCTGTCTGTGGTTCTGGAAGAGCAAATCGTGCTGGAAAAGATCTTCCGACAGCTGTTGTTCTCCTCTTTGGTTTGATTAATTTCCTCATTATGAACTACCCCAAAGAACTGAAACACATCTTTGAAACTATTCAGAAAGTGTTTATTGGCCTTGAATGCATTTGTTTGTACACTGAAATAGTGTTACTCTTGGTGTTGTCACCAAActtaaattcagttttgattttacattttcaaattttaaaaacatccatttcccaccAATTGATAGATTGGCTGTTGTGTTCAAGCgctcaacataaatgactgtgattggctgagaagtTCACCATTTCACTGCTCTTCACTGATGTTCATGGAGTgcaacacagatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacttgtgtcaGCTTATACACAGACCAGTTGATCAATGTGAAATTCttaagtgtccctgtatctgtggttacactcagtaaacagcagtgagtttggtgaactgatgatcttcacGCCCAATCAgtcttttctgttgagcatgtgaacacaatggcaatatAACAGTGTTTAAAACATGGTCAAcaacgctcaaatgttagcaggaaatggacgtttttaaaattataGAACTGATgggtaacaaaattaaaatatcgtGACAAAACTAATTACTCTTgcactttgaaaaaaatgttgatagtgcaagcattttaaatattacttttgctTAACTCGAGCACTTAAAAGGCAATATAGGATTTGAGGATTTACCTTTTTGTTGCCTCTTTTCCTTCTCTGGACTGCAGTACATTTCATTTGG
>TCONS_00033494
AATTGCTAACTCAAATCAAAATTGTAAGTTGGGTGGACATATTTTGAGCCCAGTGTTgagtttacttttaaaaatgagttaactGAAGGTTTAAAACTGGTTTGTTCAATGAAAGTAAATACTTAAGTTGAGCAGACTTTACATTTTGAGTTCTTCACTGGATCATCTACTTCCCGTCTTTGCACATGCTCAGTCTGTCTTCGGGTGCCATTTTGCACGAGGTGTCCTCTCACCAGCAGCAGCTGCCATCTCCTGATTCAGGTAAGCTTTGTTTTAGCTTTATTGTCAAAATTAATCTAAATAGCGTGCAAAtctaaagtaaaatgtaatgttatgttcCCAAAAAACTAAGTTACATCGTGTGAAGATCATTTCTGACAAGCTCGGGCTAACAAGCTAGCCACCTGTGAAGTTTGCTTCATTTGAAGGACTGTTTAACGTTAATTTGCTTCTTAAACTGGAGGGAAATGTAGTGAAATATTGTTGTTGCAAACAGACATATCTGAGCGGCCGGTCACCACTGTATTGTTAACCCTGTTGTGTCTGTATTAAAACAGCAATGCGATAacattaaaaccacttcaaaataATATTTAGCATACAACTTTAAATATACAGTCACTAGAAGTGTACATATAGTATTCCAGGAGCTTgtggtttttatgattatttatttggcATACATTAACCATTTATGAGTTAAgtaacatgtatgtatgtattatttaaatcttctctttttatgtttgcaatatttattttatattgtgctttttaaaaacatcagtttaatttatgaaaacaatttgacctgcaatgttacatttttatttacttttttataggtTTGGAATGCAGTGTAAGTTTTGCAAATTTGTAAACAGTAGCTGAGAAGTTACACTACAGACTACATCGCTATCAAGGACCATCCTGGCAGCAGCCTTGTTTGTTCGCAGACTGCTTCTGCACTTTAAAGACTGTAGGTGCATTAAAATCACATTTGACATTAGCACATTAACAGTCTGCTGCAGTTACTgactatttgatttttttaacctCCTGTAGCTGATGTCCGAAAACAGTGGCCTGCATGTTTTTGAGAGTTCAGGCAAGTTTGCATTTgagattgtttattaaaatgtataaccattgttcacaattcatactattcatttttttatggtCTGTTTGTAGGTCTATGCTGAGTTTTACAGGATTACTCAAACCAACCTCAAAGATATCTTCTCTTTTTCGGATGAATACGCTATCAAGTTTTATGGATCATGTGGTGGGCGATATGGAGAGATAATAAGAACCGCCCTGGACCAACTGGACAATCAAGTAATTATTTAGCATTCAATCATATCACTGATTAAAGGGGGGCATATTAAACTTTATGGAGTTTACCATGGAGTTTCTCTTTTTGTGTGCAATATTGGAATTCATGCAGGTAATTAATCTTTGAAGTTACAAAACAGTTTGTTCCCTAAAAGAAAAGTTTGTAGCACTGTTTTCACCTCTGTAAAGGATGCTACATTTTCATCACTTAGTCTTTAGTAGAACAACCATGACTGAGTCCGGCTGACCAGGGAGTGAAAACAGGTGCtgcaacaataattataaagcaaatttcatttttaataattaaaacatgttgGGAATTTCTGATCAAAATGACTAACCTGTGAATAACCATAATTAATGCCCTTCAATTGTAAAGTGGTGCCACCTGTCATCTCTCAGGGGTCTGAGCATCTGGTTTAATGTGACAATAGCTGATGacctatggcaagccgttttaacttttattctatAGCCCGTGCTAGTATCTATTTTCTTGTTACTAGTACTTATCCATTTTCTTAGTTCTTTTCCATTAAGTACtaactagtacttatttattagatactagtacttaattattagttactagtacttatttattagatactagtacttatttattagttactagtacttatttattagatactagttcttatttattagatactagttcttatttattagatactagttcttatttattagatactagttcttatttattagatactagtacttaattattagttactagtacttttttattagttactagtacttaattattagttactagtacttatttattagttactagtacttatttattagatactagtacttattaaatagatactagttcttatttattagttactagtacttattttaatagtgactagtaactattctgttgttactcgtaatgaattaaaaattttccCATTCATTTCTATGGGATCTCTAATTGAGATATcaactattcagttttgactagtatgtaTTCCAGCTGTGACTAGTGCATATTTTTATCTACTAGTAGTTAATCATTAGGTACTAGTACCTATTACTGAGATGCTACTACCTaattaatagatactagtacttatgtattagatactagtccttattcattaggtactagtatctatttaatagatactagtacttatttattagatactagtacttattaaatagcttactaatgtttattcatgtagagttgatgcttaacagataatcaattcactatttgctaatgcttaataaatgattcattattataaaagtgttacctgaaatgttttataaatagaaGGTATATAAATGACTGTGTTACTGACATTACTACCTTCAGTTTCCAAATTAAGTTGCtttgccttttcttttttttaccttGCTTTTTGGAGATGTTTGTGATTTAGCAGTAAAAATAGTTTTTCATCctctttttatgtttctttttactGCAGGACACAGAGCCAGAAGATACTTGCACAATAGAGATGGAGATGGACATCCTTAGCACTGTTGAAGATGATGTTGCCACTCTTCAGACCAACCTAAATGTAAGGTGCCTGTCTGTGGTTCTGGAAGAGCAAATCGTGCTGGAAAAGATCTTCCGACAGCTGTTGTTCTCCTCTTTGGTTTGATTAATTTCCTCATTATGAACTACCCCAAAGAACTGAAACACATCTTTGAAACTATTCAGAAAGTGTTTATTGGCCTTGAATGCATTTGTTTGTACACTGAAATAGTGTTACTCTTGGTGTTGTCACCAAActtaaattcagttttgattttacattttcaaattttaaaaacatccatttcccaccAATTGATAGATTGGCTGTTGTGTTCAAGCgctcaacataaatgactgtgattggctgagaagtTCACCATTTCACTGCTCTTCACTGATGTTCATGGAGTgcaacacagatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacttgtgtcaGCTTATACACAGACCAGTTGATCAATGTGAAATTCttaagtgtccctgtatctgtggttacactcagtaaacagcagtgagtttggtgaactgatgatcttcacGCCCAATCAgtcttttctgttgagcatgtgaacacaatggcaatatAACAGTGTTTAAAACATGGTCAAcaacgctcaaatgttagcaggaaatggacgtttttaaaattataGAACTGATgggtaacaaaattaaaatatcgtGACAAAACTAATTACTCTTgcactttgaaaaaaatgttgatagtgcaagcattttaaatattacttttgctTAACTCGAGCACTTAAAAGGCAATATAGGATTTGAGGATTTACCTTTTTGTTGCCTCTTTTCCTTCTCTGGACTGCAGTACATTTCATTTGGACAGAAAACTGTTTGCAGAATTGTCAATAAATATAttctttgtatata

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0007389 pattern specification process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033243 False 1615 lncRNA 0.39 5 13347400 13351251
TCONS_00033494 True 3838 lncRNA 0.33 1 13347462 13351299

Neighbor

gene id symbol gene type direction distance location
XLOC_015278 prkag2b coding upstream 198947 13056802 ~ 13148453 (+)
XLOC_015279 BX511000.1 coding upstream 223718 13123566 ~ 13123682 (+)
XLOC_015277 BX324233.1 coding upstream 295883 13050225 ~ 13051517 (+)
XLOC_015276 kmt2cb coding upstream 309856 12847602 ~ 13037544 (+)
XLOC_015275 BX908750.1 coding upstream 544494 12798366 ~ 12802906 (+)
XLOC_015281 cfap57 coding downstream 111006 13462305 ~ 13673494 (+)
XLOC_015282 ebna1bp2 coding downstream 343151 13694450 ~ 13721149 (+)
XLOC_015283 zbtb41 coding downstream 370589 13721888 ~ 13800596 (+)
XLOC_015284 cpdp coding downstream 556153 13907452 ~ 13940917 (+)
XLOC_015285 NA coding downstream 598759 13950058 ~ 13958576 (+)
XLOC_015274 NA non-coding upstream 709523 12635927 ~ 12637877 (+)
XLOC_015267 BX890600.1 non-coding upstream 1698562 11648163 ~ 11648838 (+)
XLOC_015266 NA non-coding upstream 1714077 11629002 ~ 11633323 (+)
XLOC_015286 NA non-coding downstream 609830 13961129 ~ 13962397 (+)
XLOC_015287 NA non-coding downstream 868729 14220028 ~ 14220637 (+)
XLOC_015288 NA non-coding downstream 973757 14325056 ~ 14332878 (+)
XLOC_015289 NA non-coding downstream 1150759 14502058 ~ 14506622 (+)

Expression


Co-expression Network