XLOC_015282 (ebna1bp2)


Basic Information

Item Value
gene id XLOC_015282
gene name ebna1bp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 13694450 ~ 13721149 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030645
tatatatatatatatatatatatatatatatatatatatatggccagttagggggccttacaagacaatgtgcccaggggcccctgagttcttaatccgggcctgactgtggtgacccctgatgcaaaaagggactaagtcgaaggaaaataaatgaatgtatgaataattcaaatgaaataaagtgtaaaagttcaaaaaataaaaagaaataaagttcaaattcagattgtttgtGCAAATTTTAAGCGTCCATAGTGAACTAGACTGGAAAGAcgaatataataaataagaacGAAGCTTAAGTAAAAACAGCAGATGGTAGTAATGCATTTTATGGATACCAGCTGAAAGAAGAAGACGAAGAAGTAGCAGAAGCAGCTGCAGCTGCGGAACCGTTTGTTGTTAGTCTGTGTTTCCGTCAGGACTTTGATTTACAAACACTTGTAGTGTGCTTTCCACATGTGAAGTATTTTGTGGCCGTACGTACGTTTGTATTTTCATTGTATATTCTTTGACTATGATAGAAATAGACGAGGATCCTCAGTTGGGGTTGCATTTCGACGAAGACGACGATGAATTATCTGACGACGAGGTAAGAATATGTTCCGCTTCACACGTGTTTATTTCGGGCATGGTAGAATAGTATTTATATTACTTGGACATGCCAACGCATTGAggcaaagttgtttttatatttggacGTTTTCTTTAACAATATCATTTTAGAAAACATTAGACTGTTAGAATGTTAGTCAAAATAATTAAgaaacgttttcagattttaatagACATGTCTAATAACTTAATGCTCtctgttcagctgcaagaagCTTTCGCTAAGGGTTTGCTCAAACCTGGATTGAATATCCCTCAGGATGAGCAAAAGAAGACCATCAACAATGTGGAGGGTTTGAATAAATGCCTAGCTGAGTTCAAGAAAAACCTGCCATGGATTGAAAGACTGGACCTCACCAATCCCCCTGCTGTTAACATCATTGCAAAAGCAGAGGGCCGAGCACAACAACCTGAAGGCAGTAAAGAAATAAATGCAGAAGATGACTTTCAGAGAGAGATGTACTTCTACCGGCAGGCCCAAGCAACAGTTTTAGCAGCGTTACCAAAGTTGCAAAAGTTTAAGATCCCTACTAAGAGACCTGACGATTACTTTGCAGAGATGGCCAAGACTGATCAGCACATGCAGAAGATTAGGAAAAAGCTTCTTCTCAAGCAAGAGGTGATGGAGAAATCTGAAAAAGCCAAAAGGCTAAGAGAACAGAGGAAATATGGCAAAAAGGTTCAAACTGAGGTGATTCAGAAcaggcaaaaacaaaagaaagcaaTGCTGTCTGCTGTAAAGAAATATCAGAAAGGAATGACAGATAAACTAGACTTCCTGGAAGGAGACCAAAATCAAGGACAGAAAGGATCTTCCACAAAGAagcaaataaacaagaaaaaTCCCAATGCTAAGAGGAAATATAAGGACAAGAAGTTTGGATTTGGAGGCAGGAAAAAGGGTAGCAAATGGAACACCAAAGAGAGCCATGATGATGTATCAGCGTTCAAGGCCAAAATGGCCCATGGGAAAGGCGGGGGTAAAGTCGGCAATAGAGTCAAGATGAACAAACGGCCAGGAAAAGAAGCAAGAAGGAAAATGAAGGCACGGAAATAAGCTGTATCTTCCTATTGACTTTAATTGTGCCattaaaagatgttttttttttctttttgttattaataaatcttaGCTATTACTTCAGTGAAGTTTTGACTGTTTTCTTTCCCCTGACAAACACCCTTTGGTGTTTTTCAAAAGATGTTGCCTCAGAGCGTacatttgaagaatgtttaaaaaattgtatgACAAAACATTCATTAAAACCCTTTAGGATTAAGCATTAGGATTAAGATTATAGTGAATGGAAactctgtcagtccagttttttagttcagttcagttcagtgcggtttaattttttactgttaaaatttagagcactgaagagcaaatacatcaatgcgcagctccgcaagtcccaaaccatgcaagctagggGCGATTTAGTCTGTGAACAGCCTTATCTGATGTCTTGTTATAGAAATATGACTTACAGAGCATGCACTGATTATGGGCTGTcatgatgtgttttttttcccaaaagtTCTTGAAAAAAGGATCACATTCaggtcttcattttttttttaaagggtccTGACCTCTGTAACactttttacacacattttaagctTCATAAATATGTTCTGTGTTtgtcaaacaaatatatatatatatatatatatatatatatatttttttttgtattaaaaaatagttttgtattATCAAATAACATTTGGGAAAGTTTGCTGTAGTAAGGAAGATCTGCTTCATtcctgtctgtcactgtgctgattATCTACGTGAAGGctataaaataaagtatatagCAATACAAACAGGACTTAGTGGCTTTGACACGCATGTGGGATTTACTGGTGAGGAGAACCTGCCCATTTGCATTATAGTCGCATGcagcaaaaacagctacaatgtcctaacagctcaaatttccaagatttaaaataaatggataATTCTTTAACTACAGGGACTTTAATGTTCTTTAAtcatatatacaattgaagtcagaattattagccctcctgtttatatttttccccaatttcggtttaacggagagatttttttaaacacataatCGCCAAAAtacagaagaaaaactattatcagaatcttctacagaagaaaaactattatcagacatactgtgaaaatgtctttgctctgttaaacatcattcattcattttcttttcatcttccaaaagatttattattatcCCTTTATTAAGCCGGGataaccacagcggaataactgccaacttatccagcatgttctTTTGCAGCGGATGCTAAATATTAagggtaaatattgcttgataggTTAATACATTTATTCTGTCATTTCCATTCATGCTGTATCTTcaaagatgttttttaaaaaacaaacaaaattatggtAAATAAGTGTATTTTGTTTACATGAAAGACAGCATGTGCTGGAAGTGCCATTTATGGTTATAAAATACAATTGATATGGATTGCTAAAGTACATGGGttggacaataaaactgaaacacTAGCCAATTTAGTGTTGGATGTTTAATGGCTAAATTTGAGCAGCTGGTGGCCAGtcttcattgattgcacattccaccagtaaCAGCAGAGTGCATTcgctttaattataaataaaaaggttTGATTGGCAgagtaatagcacagttttgcttaaaatattgcactGCACAAAACATCATGTCATATGGTGACATCAGAGTTCAAAAGGGTACAGATTGTTTGTTCATCATGCAAATTGGTGTGCATCTCACTGGTACATCTGTGACCAAAACAGTaagtctttgtgatgtatcaGGAGCCACAGTATCCAGAGTAATGTCAGGAAACCACCAAAAAGAAGAACCAAATCCAACAGGAACAACTGGACGCATaaggaagctgtctgaaagggatgttGGGGTCCTTACAGTGTTGTTTCCACTAAAACTGTTGGTCAGGAGCTCTACAGGGTTAATATACATGCCTAACTGCTGTAGCCAAACCTTTGCTCGCTCGTGCCAATGCCAAACGCCTGTTTCAATGGTGCAGGAGccaaaatcttgggctgtggaaaATATGAAACATGTTTTGGTCtttgatgagtccaccttcactctCTTTCCCACATCCAAAAGAGTTATGTTGTGTAGAAGCCCTAAAGAAGTGTACCACTGCACACAGATTGTTATTGCCCAGAGTCAAGCATGGGGGGATCAGTGATGTTCTGGACTGGAGGACCATGTGTGCCCAGTGGTTCAAACAATGTATCCTGAAGGCGGGTGTATGTATTAGGATAATGCTTCAATAGACACAGCAAGGccggtgacagagtggtttgatgaacaagTGAAGTTGAATATCTCCTATGGCCTGCACAGGCACTAGTTCTATAATATTATTAAGCATTCTGAAGTATTTTGGTGGAACGAGACAGCAAATGGTTTCTTCCACCAGCATCACATAGTGACCTAAACACTATTCTGCCAGAAGAATGACTCAAAATCCCTAATGCCACTGTGCAAGACTTGTGTCATTCCTGGGATAAACTGAGCTATATTGTCTGCAAAAGGAGAACCTACACCATACTGATGAATAATTGTGCTTTAAAACCAGGCCTTTCAGTTTCCTTTTCAACCCCTATTGATGTGTaatactattttaaaattaatttatataatatttcagtaataataatCAGTTATTTACAGTATGCACTGTTACTGTTCCTCTGTTAGATAAATGTTTTTTAGATTAATCTCAGCCTTACACATGCAAAAATGGGTGGTTATGCTTAGTAAGTTAGTAAATTGAGTTTATTGAGTGTGAGCTTAAGAGTTTAATAATTTTCTAATAAACATCTACATTAATGTTGATTTATTGTCATTTCCACAACGCTCTGTCATTTCCATAGCCaccaatatttaaaaagttctcatcacacattcaaaatgttttcagtatttatgagttcatgctctatttaatatacaaaatcaatttatatatattttaaaaagctcctaaccaaattattttaaaattttagacTGTGAAATGTACAATTCAGCATTTGGTCCTAAagactaatttatttcattgacaattGTTTAATTGtgtatattgtggaaagattggttaatgttttgtttatattgtttttctaaggttaatatgagttgtaatttgcagttttaaaatgacatttgttaTTTTCATTAGATCATTAGAAGCTATGATGAATTTTTTGTACTTGCTggggaatttttatttatttttttcgcaaATAGGTTTCTTAGAAATATACCAACTTTGAtagttttttatgttaaataaaacatttaattaacattCACTTAAATTGATTGatgataaaaaaatgtgtttcttttcTGACAAAGATCTTTTGTGCAACTTGATTCTGagtctttttattattatcattatttttattctctCTTCTTTATTGTTTATCCAATTTGGATAATTTGCAAAAGGATTGTATTTGTTTAGTGTATTCTTTATAATGTT
>TCONS_00030644
tatatatatatatatatatatatatatatatatatatatatggccagttagggggccttacaagacaatgtgcccaggggcccctgagttcttaatccgggcctgactgtggtgacccctgatgcaaaaagggactaagtcgaaggaaaataaatgaatgtatgaataattcaaatgaaataaagtgtaaaagttcaaaaaataaaaagaaataaagttcaaattcagattgtttgtGCAAATTTTAAGCGTCCATAGTGAACTAGACTGGAAAGAcgaatataataaataagaacGAAGCTTAAGTAAAAACAGCAGATGGTAGTAATGCATTTTATGGATACCAGCTGAAAGAAGAAGACGAAGAAGTAGCAGAAGCAGCTGCAGCTGCGGAACCGTTTGTTGTTAGTCTGTGTTTCCGTCAGGACTTTGATTTACAAACACTTGTAGTGTGCTTTCCACATGTGAAGTATTTTGTGGCCGTACGTACGTTTGTATTTTCATTGTATATTCTTTGACTATGATAGAAATAGACGAGGATCCTCAGTTGGGGTTGCATTTCGACGAAGACGACGATGAATTATCTGACGACGAGctgcaagaagCTTTCGCTAAGGGTTTGCTCAAACCTGGATTGAATATCCCTCAGGATGAGCAAAAGAAGACCATCAACAATGTGGAGGGTTTGAATAAATGCCTAGCTGAGTTCAAGAAAAACCTGCCATGGATTGAAAGACTGGACCTCACCAATCCCCCTGCTGTTAACATCATTGCAAAAGCAGAGGGCCGAGCACAACAACCTGAAGGCAGTAAAGAAATAAATGCAGAAGATGACTTTCAGAGAGAGATGTACTTCTACCGGCAGGCCCAAGCAACAGTTTTAGCAGCGTTACCAAAGTTGCAAAAGTTTAAGATCCCTACTAAGAGACCTGACGATTACTTTGCAGAGATGGCCAAGACTGATCAGCACATGCAGAAGATTAGGAAAAAGCTTCTTCTCAAGCAAGAGGTGATGGAGAAATCTGAAAAAGCCAAAAGGCTAAGAGAACAGAGGAAATATGGCAAAAAGGTTCAAACTGAGGTGATTCAGAAcaggcaaaaacaaaagaaagcaaTGCTGTCTGCTGTAAAGAAATATCAGAAAGGAATGACAGATAAACTAGACTTCCTGGAAGGAGACCAAAATCAAGGACAGAAAGGATCTTCCACAAAGAagcaaataaacaagaaaaaTCCCAATGCTAAGAGGAAATATAAGGACAAGAAGTTTGGATTTGGAGGCAGGAAAAAGGGTAGCAAATGGAACACCAAAGAGAGCCATGATGATGTATCAGCGTTCAAGGCCAAAATGGCCCATGGGAAAGGCGGGGGTAAAGTCGGCAATAGAGTCAAGATGAACAAACGGCCAGGAAAAGAAGCAAGAAGGAAAATGAAGGCACGGAAATAAGCTGTATCTTCCTATTGACTTTAATTGTGCCattaaaagatgttttttttttctttttgttattaataaatcttaGCTATTACTTCAGTGAAGTTTTGACTGTTTTCTTTCCCCTGACAAACACCCTTTGGTGTTTTTCAAAAGATGTTGCCTCAGAGCGTacatttgaagaatgtttaaaaaattgtatgACAAAACATTCATTAAAACCCTTTAGGATTAAGCATTAGGATTAAGATTATAGTGAATGGAAactctgtcagtccagttttttagttcagttcagttcagtgcggtttaattttttactgttaaaatttagagcactgaagagcaaatacatcaatgcgcagctccgcaagtcccaaaccatgcaagctagggGCGATTTAGTCTGTGAACAGCCTTATCTGATGTCTTGTTATAGAAATATGACTTACAGAGCATGCACTGATTATGGGCTGTcatgatgtgttttttttcccaaaagtTCTTGAAAAAAGGATCACATTCaggtcttcattttttttttaaagggtccTGACCTCTGTAACactttttacacacattttaagctTCATAAATATGTTCTGTGTTtgtcaaacaaatatatatatatatatatatatatatatatatttttttttgtattaaaaaatagttttgtattATCAAATAACATTTGGGAAAGTTTGCTGTAGTAAGGAAGATCTGCTTCATtcctgtctgtcactgtgctgattATCTACGTGAAGGctataaaataaagtatatagCAATACAAACAGGACTTAGTGGCTTTGACACGCATGTGGGATTTACTGGTGAGGAGAACCTGCCCATTTGCATTATAGTCGCATGcagcaaaaacagctacaatgtcctaacagctcaaatttccaagatttaaaataaatggataATTCTTTAACTACAGGGACTTTAATGTTCTTTAAtcatatatacaattgaagtcagaattattagccctcctgtttatatttttccccaatttcggtttaacggagagatttttttaaacacataatCGCCAAAAtacagaagaaaaactattatcagaatcttctacagaagaaaaactattatcagacatactgtgaaaatgtctttgctctgttaaacatcattcattcattttcttttcatcttccaaaagatttattattatcCCTTTATTAAGCCGGGataaccacagcggaataactgccaacttatccagcatgttctTTTGCAGCGGATGCTAAATATTAagggtaaatattgcttgataggTTAATACATTTATTCTGTCATTTCCATTCATGCTGTATCTTcaaagatgttttttaaaaaacaaacaaaattatggtAAATAAGTGTATTTTGTTTACATGAAAGACAGCATGTGCTGGAAGTGCCATTTATGGTTATAAAATACAATTGATATGGATTGCTAAAGTACATGGGttggacaataaaactgaaacacTAGCCAATTTAGTGTTGGATGTTTAATGGCTAAATTTGAGCAGCTGGTGGCCAGtcttcattgattgcacattccaccagtaaCAGCAGAGTGCATTcgctttaattataaataaaaaggttTGATTGGCAgagtaatagcacagttttgcttaaaatattgcactGCACAAAACATCATGTCATATGGTGACATCAGAGTTCAAAAGGGTACAGATTGTTTGTTCATCATGCAAATTGGTGTGCATCTCACTGGTACATCTGTGACCAAAACAGTaagtctttgtgatgtatcaGGAGCCACAGTATCCAGAGTAATGTCAGGAAACCACCAAAAAGAAGAACCAAATCCAACAGGAACAACTGGACGCATaaggaagctgtctgaaagggatgttGGGGTCCTTACAGTGTTGTTTCCACTAAAACTGTTGGTCAGGAGCTCTACAGGGTTAATATACATGCCTAACTGCTGTAGCCAAACCTTTGCTCGCTCGTGCCAATGCCAAACGCCTGTTTCAATGGTGCAGGAGccaaaatcttgggctgtggaaaATATGAAACATGTTTTGGTCtttgatgagtccaccttcactctCTTTCCCACATCCAAAAGAGTTATGTTGTGTAGAAGCCCTAAAGAAGTGTACCACTGCACACAGATTGTTATTGCCCAGAGTCAAGCATGGGGGGATCAGTGATGTTCTGGACTGGAGGACCATGTGTGCCCAGTGGTTCAAACAATGTATCCTGAAGGCGGGTGTATGTATTAGGATAATGCTTCAATAGACACAGCAAGGccggtgacagagtggtttgatgaacaagTGAAGTTGAATATCTCCTATGGCCTGCACAGGCACTAGTTCTATAATATTATTAAGCATTCTGAAGTATTTTGGTGGAACGAGACAGCAAATGGTTTCTTCCACCAGCATCACATAGTGACCTAAACACTATTCTGCCAGAAGAATGACTCAAAATCCCTAATGCCACTGTGCAAGACTTGTGTCATTCCTGGGATAAACTGAGCTATATTGTCTGCAAAAGGAGAACCTACACCATACTGATGAATAATTGTGCTTTAAAACCAGGCCTTTCAGTTTCCTTTTCAACCCCTATTGATGTGTaatactattttaaaattaatttatataatatttcagtaataataatCAGTTATTTACAGTATGCACTGTTACTGTTCCTCTGTTAGATAAATGTTTTTTAGATTAATCTCAGCCTTACACATGCAAAAATGGGTGGTTATGCTTAGTAAGTTAGTAAATTGAGTTTATTGAGTGTGAGCTTAAGAGTTTAATAATTTTCTAATAAACATCTACATTAATGTTGATTTATTGTCATTTCCACAACGCTCTGTCATTTCCATAGCCaccaatatttaaaaagttctcatcacacattcaaaatgttttcagtatttatgagttcatgctctatttaatatacaaaatcaatttatatatattttaaaaagctcctaaccaaattattttaaaattttagacTGTGAAATGTACAATTCAGCATTTGGTCCTAAagactaatttatttcattgacaattGTTTAATTGtgtatattgtggaaagattggttaatgttttgtttatattgtttttctaaggttaatatgagttgtaatttgcagttttaaaatgacatttgttaTTTTCATTAGATCATTAGAAGCTATGATGAATTTTTTGTACTTGCTggggaatttttatttatttttttcgcaaATAGGTTTCTTAGAAATATACCAACTTTGAtagttttttatgttaaataaaacatttaattaacattCACTTAAATTGATTGatgataaaaaaatgtgtttcttttcTGACAAAGATCTTTTGTGCAACTTGATTCTGagtctttttattattatcattatttttattctctCTTCTTTATTGTTTATCCAATTTGGATAATTTGCAAAAGGATTGTATTTGTTTAGTGTATTCTTTATAATGTT
>TCONS_00030646
AGATTAGGAAAAAGCTTCTTCTCAAGCAAGAGGTGATGGAGAAATCTGAAAAAGCCAAAAGGCTAAGAGAACAGAGGAAATATGGCAAAAAGGTTCAAACTGAGGTGATTCAGAAcaggcaaaaacaaaagaaagcaaTGCTGTCTGCTGTAAAGAAATATCAGAAAGGAATGACAGATAAACTAGACTTCCTGGAAGGAGACCAAAATCAAGGACAGAAAGGATCTTCCACAAAGAagcaaataaacaagaaaaaTCCCAATGCTAAGAGGAAATATAAGGACAAGAAGTTTGGATTTGGAGGCAGGAAAAAGGGTAGCAAATGGAACACCAAAGAGAGCCATGATGATGTATCAGCGTTCAAGGCCAAAATGGCCCATGGGAAAGGCGGGGGTAAAGTCGGCAATAGAGTCAAGATGAACAAACGGCCAGGAAAAGAAGCAAGAAGGAAAATGAAGGCACGGAAATAAGCTGTATCTTCCTATTGACTTTAATTGTGCCattaaaagatgttttttttttctttttgttattaataaatcttaGCTATTACTTCA

Function

symbol description
ebna1bp2 Predicted to be involved in rRNA processing and ribosomal large subunit biogenesis. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleus. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in nuclear periphery and nucleolus. Orthologous to human EBNA1BP2 (EBNA1 binding protein 2).

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0034399 nuclear periphery cellular_component
GO:0005730 nucleolus cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-030131-6989 Predicted to be involved in rRNA processing and ribosomal large subunit biogenesis. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleus. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in nuclear periphery and nucleolus. Orthologous to human EBNA1BP2 (EBNA1 binding protein 2).

Ensembl:

ensembl_id ENSDARG00000054980

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030645 False 5172 mRNA 0.35 8 13694450 13721149
TCONS_00030644 False 4944 mRNA 0.35 9 13694450 13721149
TCONS_00030646 True 557 mRNA 0.38 5 13710439 13717739

Neighbor

gene id symbol gene type direction distance location
XLOC_015281 cfap57 coding upstream 20956 13462305 ~ 13673494 (+)
XLOC_015280 NA coding upstream 343151 13347400 ~ 13351299 (+)
XLOC_015278 prkag2b coding upstream 545997 13056802 ~ 13148453 (+)
XLOC_015279 BX511000.1 coding upstream 570768 13123566 ~ 13123682 (+)
XLOC_015277 BX324233.1 coding upstream 642933 13050225 ~ 13051517 (+)
XLOC_015283 zbtb41 coding downstream 739 13721888 ~ 13800596 (+)
XLOC_015284 cpdp coding downstream 186303 13907452 ~ 13940917 (+)
XLOC_015285 NA coding downstream 228909 13950058 ~ 13958576 (+)
XLOC_015286 NA coding downstream 239980 13961129 ~ 13962397 (+)
XLOC_015287 NA coding downstream 498879 14220028 ~ 14220637 (+)
XLOC_015275 BX908750.1 non-coding upstream 891544 12798366 ~ 12802906 (+)
XLOC_015274 NA non-coding upstream 1056573 12635927 ~ 12637877 (+)
XLOC_015267 BX890600.1 non-coding upstream 2045612 11648163 ~ 11648838 (+)
XLOC_015288 NA non-coding downstream 603907 14325056 ~ 14332878 (+)
XLOC_015289 NA non-coding downstream 780909 14502058 ~ 14506622 (+)

Expression


Co-expression Network