XLOC_015285


Basic Information

Item Value
gene id XLOC_015285
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 13950058 ~ 13958576 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033496
AACCGAAACCCCCTTTGCGAGATTCGCCACATCTATACCCGATTTGCGTTCAAAAATGCCTGCTTAATTATTTCATAGTAGGAGCAAACATGCCTTAAGGAAAGGAGTACATTTGAAACTTTAGTAACCATAAAATGTACGCCAGGTGGATGCCTTTCTACTCCAGGAAGCCGCAGCATACGGCCTGAAGGAGGAAGAGGACGCGGTCAGTTTGAAATagctgaatcaATGACATCCTGAAAGCAGCAGTACAGTTAAGAAGCCCATGTTTTGCTGTATCTCCACACAGCTGGGCCAGTTCTGCAGATGATCAGAGGGACTTCGCCATCATCACATCCCTCACTGCTGCAGTCAGACTGAAAAAGAACGGTGATGCATGGCAGTCCATGCCCGAGATACTGATGATGAAGAGACCACAGCAACATTTGGTCCAGATGAGGACACAAGGGCAGATGGACTGATGCAGGGTATTGTTCAATTCACTACAGGAGAACAGGAGTGGCCAAACTCAGTCCAGAACTGCTGCTGTCTTGCAGAGTTTAGTTGAAGTTGACTCTAAACTCTACAGGACACCAGCcgtccagaactgagtttgggcacccctgcattaCAGCATTTCCAGGATGCTGCTGTGGACTTCTTTACCCTCACCACACACACCaatctgcagatatttcagatcatacaaaacataaaaaacatttaaaaaacaaagtcATTTTACTGCACAATGTGACATTTGATTTATGTAGTGTTAGTAATAAAATTATCCTACCTCTTATTTTGGATTCTTTTTTCCTCAAATATGTTAGTTCCCTTGTCTACAGGTCAAGCTCCATCACAACAGCTCTgcagaaaaagcacacacaaacaccagcAATCAGAAAGCTGATGTAATCACTGtttgacaataaaataataataaaaactaataataaatagcaaatgtaaaaGATGCTTTCTTAATTTCTGTACTGTACTCAATAAAAGCCTCCCTGTAACGTTGAGACTAGAATAAATCACCTCTGTGATCAGGCCCG
>TCONS_00033495
AACCGAAACCCCCTTTGCGAGATTCGCCACATCTATACCCGATTTGCGTTCAAAAATGCCTGCTTAATTATTTCATAGTAGGAGCAAACATGCCTTAAGGAAAGGAGTACATTTGAAACTTTAGTAACCATAAAATGTACGCCAGGTGGATGCCTTTCTACTCCAGGAAGCCGCAGCATACGGCCTGAAGGAGGAAGAGGACGCGGTCAGTTTGAAATAAGCCCATGTTTTGCTGTATCTCCACACAGCTGGGCCAGTTCTGCAGATGATCAGAGGGACTTCGCCATCATCACATCCCTCACTGCTGCAGTCAGACTGAAAAAGAACGGTGATGCATGGCAGTCCATGCCCGAGATACTGATGATGAAGAGACCACAGCAACATTTGGTCCAGATGAGGACACAAGGGCAGATGGACTGATGCAGGGTATTGTTCAATTCACTACAGGAGAACAGGAGTGGCCAAACTCAGTCCAGAACTGCTGCTGTCTTGCAGAGTTTAGTTGAAGTTGACTCTAAACTCTACAGGACACCAGCcgtccagaactgagtttgggcacccctgcattaCAGCATTTCCAGGATGCTGCTGTGGACTTCTTTACCCTCACCACACACACCaatctgcagatatttcagatcatacaaaacataaaaaacatttaaaaaacaaagtcATTTTACTGCACAATGTGACATTTGATTTATGTAGTGTTAGTAATAAAATTATCCTACCTCTTATTTTGGATTCTTTTTTCCTCAAATATGTTAGTTCCCTTGTCTACAGGTCAAGCTCCATCACAACAGCTCTgcagaaaaagcacacacaaacaccagcAATCAGAAAGCTGATGTAATCACTGtttgacaataaaataataataaaaactaataataaatagcaaatgtaaaaGATGCTTTCTTAATTTCTGTACTGTACTCAATAAAAGCCTCCCTGTAACGTTGAGACTAGAATAAATCACCTCTGTGATCAGGCCCG
>TCONS_00033244
CTTAAGGAAAGGAGTACATTTGAAACTTTAGTAACCATAAAATGTACGCCAGGTGGATGCCTTTCTACTCCAGGAAGCCGCAGCATACGGCCTGAAGGAGGAAGAGGACGCGGTCAGTTTGAAATagctgaatcaATGACATCCTGAAAGCAGCAGTACAGTTAAGGTACGTTTTCATTGCTTCTTTTTATAAAACCACTTATAGTTGT
>TCONS_00033497
TTGAAATagctgaatcaATGACATCCTGAAAGCAGCAGTACAGTTAAGCTGGGCCAGTTCTGCAGATGATCAGAGGGACTTCGCCATCATCACATCCCTCACTGCTGCAGTCAGACTGAAAAAGAACGGTGATGCATGGCAGTCCATGCCCGAGATACTGATGATGAAGAGACCACAGCAACATTTGGTCCAGATGAGGACACAAGGGCAGATGGACTGATGCAGGGTATTGTTCAATTCACTACAGGAGAACAGGAGTGGCCAAACTCAGTCCAGAACTGCTGCTGTCTTGCAGAGTTTAGTTGAAGTTGACTCTAAACTCTACAGGACACCAGCcgtccagaactgagtttgggcacccctgcattaCAGCATTTCCAGGATGCTGCTGTGGACTTCTTTACCCTCACCACACACACCaatctgcagatatttcagatcatacaaaacataaaaaacatttaaaaaacaaagtcATTTTACTGCACAATGTGACATTTGATTTATGTAGTGTTAGTAATAAAATTATCCTACCTCTTATTTTGGATTCTTTTTTCCTCAAATATGTTAGTTCCCTTGTCTACAGGTCAAGCTCCATCACAACAGCTCTgcagaaaaagcacacacaaacaccagcAATCAGAAAGCTGATGTAATCACTGtttgacaataaaataataataaaaactaataataaatagcaaatgtaaaaGATGCTTTCTTAATTTCTGTACTGTACTCAATAAAAGCCTCCCTGTAACGTTGAGACTAGAATAAATCACCTCTGTGATCAGGCCCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033496 False 1040 lncRNA 0.42 3 13950058 13958576
TCONS_00033495 False 999 lncRNA 0.42 2 13950058 13958576
TCONS_00033244 False 209 lncRNA 0.42 2 13950151 13954515
TCONS_00033497 True 799 lncRNA 0.41 3 13950269 13958576

Neighbor

gene id symbol gene type direction distance location
XLOC_015284 cpdp coding upstream 9141 13907452 ~ 13940917 (+)
XLOC_015283 zbtb41 coding upstream 149462 13721888 ~ 13800596 (+)
XLOC_015282 ebna1bp2 coding upstream 228909 13694450 ~ 13721149 (+)
XLOC_015281 cfap57 coding upstream 276564 13462305 ~ 13673494 (+)
XLOC_015280 NA coding upstream 598759 13347400 ~ 13351299 (+)
XLOC_015286 NA coding downstream 2553 13961129 ~ 13962397 (+)
XLOC_015287 NA coding downstream 261452 14220028 ~ 14220637 (+)
XLOC_015288 NA coding downstream 366480 14325056 ~ 14332878 (+)
XLOC_015289 NA coding downstream 543482 14502058 ~ 14506622 (+)
XLOC_015290 CR388189.8 coding downstream 701780 14660356 ~ 14660546 (+)
XLOC_015279 BX511000.1 non-coding upstream 826376 13123566 ~ 13123682 (+)
XLOC_015275 BX908750.1 non-coding upstream 1147152 12798366 ~ 12802906 (+)
XLOC_015274 NA non-coding upstream 1312181 12635927 ~ 12637877 (+)
XLOC_015267 BX890600.1 non-coding upstream 2301220 11648163 ~ 11648838 (+)

Expression


Co-expression Network