XLOC_015285


Basic Information

Item Value
gene id XLOC_015285
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 13950058 ~ 13958576 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033496
AACCGAAACCCCCTTTGCGAGATTCGCCACATCTATACCCGATTTGCGTTCAAAAATGCCTGCTTAATTATTTCATAGTAGGAGCAAACATGCCTTAAGGAAAGGAGTACATTTGAAACTTTAGTAACCATAAAATGTACGCCAGGTGGATGCCTTTCTACTCCAGGAAGCCGCAGCATACGGCCTGAAGGAGGAAGAGGACGCGGTCAGTTTGAAATagctgaatcaATGACATCCTGAAAGCAGCAGTACAGTTAAGAAGCCCATGTTTTGCTGTATCTCCACACAGCTGGGCCAGTTCTGCAGATGATCAGAGGGACTTCGCCATCATCACATCCCTCACTGCTGCAGTCAGACTGAAAAAGAACGGTGATGCATGGCAGTCCATGCCCGAGATACTGATGATGAAGAGACCACAGCAACATTTGGTCCAGATGAGGACACAAGGGCAGATGGACTGATGCAGGGTATTGTTCAATTCACTACAGGAGAACAGGAGTGGCCAAACTCAGTCCAGAACTGCTGCTGTCTTGCAGAGTTTAGTTGAAGTTGACTCTAAACTCTACAGGACACCAGCcgtccagaactgagtttgggcacccctgcattaCAGCATTTCCAGGATGCTGCTGTGGACTTCTTTACCCTCACCACACACACCaatctgcagatatttcagatcatacaaaacataaaaaacatttaaaaaacaaagtcATTTTACTGCACAATGTGACATTTGATTTATGTAGTGTTAGTAATAAAATTATCCTACCTCTTATTTTGGATTCTTTTTTCCTCAAATATGTTAGTTCCCTTGTCTACAGGTCAAGCTCCATCACAACAGCTCTgcagaaaaagcacacacaaacaccagcAATCAGAAAGCTGATGTAATCACTGtttgacaataaaataataataaaaactaataataaatagcaaatgtaaaaGATGCTTTCTTAATTTCTGTACTGTACTCAATAAAAGCCTCCCTGTAACGTTGAGACTAGAATAAATCACCTCTGTGATCAGGCCCG
>TCONS_00033495
AACCGAAACCCCCTTTGCGAGATTCGCCACATCTATACCCGATTTGCGTTCAAAAATGCCTGCTTAATTATTTCATAGTAGGAGCAAACATGCCTTAAGGAAAGGAGTACATTTGAAACTTTAGTAACCATAAAATGTACGCCAGGTGGATGCCTTTCTACTCCAGGAAGCCGCAGCATACGGCCTGAAGGAGGAAGAGGACGCGGTCAGTTTGAAATAAGCCCATGTTTTGCTGTATCTCCACACAGCTGGGCCAGTTCTGCAGATGATCAGAGGGACTTCGCCATCATCACATCCCTCACTGCTGCAGTCAGACTGAAAAAGAACGGTGATGCATGGCAGTCCATGCCCGAGATACTGATGATGAAGAGACCACAGCAACATTTGGTCCAGATGAGGACACAAGGGCAGATGGACTGATGCAGGGTATTGTTCAATTCACTACAGGAGAACAGGAGTGGCCAAACTCAGTCCAGAACTGCTGCTGTCTTGCAGAGTTTAGTTGAAGTTGACTCTAAACTCTACAGGACACCAGCcgtccagaactgagtttgggcacccctgcattaCAGCATTTCCAGGATGCTGCTGTGGACTTCTTTACCCTCACCACACACACCaatctgcagatatttcagatcatacaaaacataaaaaacatttaaaaaacaaagtcATTTTACTGCACAATGTGACATTTGATTTATGTAGTGTTAGTAATAAAATTATCCTACCTCTTATTTTGGATTCTTTTTTCCTCAAATATGTTAGTTCCCTTGTCTACAGGTCAAGCTCCATCACAACAGCTCTgcagaaaaagcacacacaaacaccagcAATCAGAAAGCTGATGTAATCACTGtttgacaataaaataataataaaaactaataataaatagcaaatgtaaaaGATGCTTTCTTAATTTCTGTACTGTACTCAATAAAAGCCTCCCTGTAACGTTGAGACTAGAATAAATCACCTCTGTGATCAGGCCCG
>TCONS_00033244
CTTAAGGAAAGGAGTACATTTGAAACTTTAGTAACCATAAAATGTACGCCAGGTGGATGCCTTTCTACTCCAGGAAGCCGCAGCATACGGCCTGAAGGAGGAAGAGGACGCGGTCAGTTTGAAATagctgaatcaATGACATCCTGAAAGCAGCAGTACAGTTAAGGTACGTTTTCATTGCTTCTTTTTATAAAACCACTTATAGTTGT
>TCONS_00033497
TTGAAATagctgaatcaATGACATCCTGAAAGCAGCAGTACAGTTAAGCTGGGCCAGTTCTGCAGATGATCAGAGGGACTTCGCCATCATCACATCCCTCACTGCTGCAGTCAGACTGAAAAAGAACGGTGATGCATGGCAGTCCATGCCCGAGATACTGATGATGAAGAGACCACAGCAACATTTGGTCCAGATGAGGACACAAGGGCAGATGGACTGATGCAGGGTATTGTTCAATTCACTACAGGAGAACAGGAGTGGCCAAACTCAGTCCAGAACTGCTGCTGTCTTGCAGAGTTTAGTTGAAGTTGACTCTAAACTCTACAGGACACCAGCcgtccagaactgagtttgggcacccctgcattaCAGCATTTCCAGGATGCTGCTGTGGACTTCTTTACCCTCACCACACACACCaatctgcagatatttcagatcatacaaaacataaaaaacatttaaaaaacaaagtcATTTTACTGCACAATGTGACATTTGATTTATGTAGTGTTAGTAATAAAATTATCCTACCTCTTATTTTGGATTCTTTTTTCCTCAAATATGTTAGTTCCCTTGTCTACAGGTCAAGCTCCATCACAACAGCTCTgcagaaaaagcacacacaaacaccagcAATCAGAAAGCTGATGTAATCACTGtttgacaataaaataataataaaaactaataataaatagcaaatgtaaaaGATGCTTTCTTAATTTCTGTACTGTACTCAATAAAAGCCTCCCTGTAACGTTGAGACTAGAATAAATCACCTCTGTGATCAGGCCCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033496 False 1040 lncRNA 0.42 3 13950058 13958576
TCONS_00033495 False 999 lncRNA 0.42 2 13950058 13958576
TCONS_00033244 False 209 lncRNA 0.42 2 13950151 13954515
TCONS_00033497 True 799 lncRNA 0.41 3 13950269 13958576
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Neighbor

gene id symbol gene type direction distance location
XLOC_015284 cpdp coding upstream 9141 13907452 ~ 13940917 (+)
XLOC_015283 zbtb41 coding upstream 149462 13721888 ~ 13800596 (+)
XLOC_015282 ebna1bp2 coding upstream 228909 13694450 ~ 13721149 (+)
XLOC_015281 cfap57 coding upstream 276564 13462305 ~ 13673494 (+)
XLOC_015280 NA coding upstream 598759 13347400 ~ 13351299 (+)
XLOC_015286 NA coding downstream 2553 13961129 ~ 13962397 (+)
XLOC_015287 NA coding downstream 261452 14220028 ~ 14220637 (+)
XLOC_015288 NA coding downstream 366480 14325056 ~ 14332878 (+)
XLOC_015289 NA coding downstream 543482 14502058 ~ 14506622 (+)
XLOC_015290 CR388189.8 coding downstream 701780 14660356 ~ 14660546 (+)
XLOC_015279 BX511000.1 non-coding upstream 826376 13123566 ~ 13123682 (+)
XLOC_015275 BX908750.1 non-coding upstream 1147152 12798366 ~ 12802906 (+)
XLOC_015274 NA non-coding upstream 1312181 12635927 ~ 12637877 (+)
XLOC_015267 BX890600.1 non-coding upstream 2301220 11648163 ~ 11648838 (+)

Expression

Expression of XLOC_015285 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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Expression of XLOC_015285 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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Co-expression Network