XLOC_015287


Basic Information

Item Value
gene id XLOC_015287
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 14220028 ~ 14220637 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033499
CATCCGCGGCATACGCCGGCGTGTCGTCGTGCACGAGGTAAGGACCAAGCAGGCGAAGGAAAGCCGACTGATCCCCAAGGCCAGCCTGGTGCGCTGTCACCGGACCGCTGGGAGGAAAATTCCCGCCCTGCTAGGTAAGCAAGCCCTTCCGCCGTTCCAGCGATTCCCCCTGTTCGTTCTTCCGGGCCACCAGCAGCTGTTGTTTGAGCTGCTCGCGCCCCGGAGAACAAGTCACCAGCAGCCAAGAGCTGTTGGTGACCCAGAAAGGAAATAGAACCGTCGGTGGTCTAATCTGTCTAATGTCCTTCACCAGATAGCCTCGAATCCAACCCAAGCACTAGGCAACAGTGGCGCTTCTATGGCTTTCTGACTGGCTACCTAACCTCCATCTCTGGGCACCGCTGTGGAGTCTTCCAGAATCTCACAATCCAGGAGGTTGAAGAGGCCTCCAGAAGCCCCGACGAGTCTGCTTATGTCATTAACGTGAGTATGGCGCAAGTAAGGTGGGGGTCACCAGTAGCatgctctctcactcactcactcactcactgcttGTTCTCTGATGGCAGATTACcactcacaaaacaaacagagcctttggggcggctca

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0010467 gene expression biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0021511 spinal cord patterning biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033499 True 610 lncRNA 0.56 1 14220028 14220637

Neighbor

gene id symbol gene type direction distance location
XLOC_015286 NA coding upstream 257631 13961129 ~ 13962397 (+)
XLOC_015285 NA coding upstream 261452 13950058 ~ 13958576 (+)
XLOC_015284 cpdp coding upstream 279111 13907452 ~ 13940917 (+)
XLOC_015283 zbtb41 coding upstream 419432 13721888 ~ 13800596 (+)
XLOC_015282 ebna1bp2 coding upstream 498879 13694450 ~ 13721149 (+)
XLOC_015288 NA coding downstream 104419 14325056 ~ 14332878 (+)
XLOC_015289 NA coding downstream 281421 14502058 ~ 14506622 (+)
XLOC_015290 CR388189.8 coding downstream 439719 14660356 ~ 14660546 (+)
XLOC_015291 CR388189.7 coding downstream 444531 14665168 ~ 14665353 (+)
XLOC_015292 CR388189.3 coding downstream 450360 14670997 ~ 14671173 (+)
XLOC_015280 NA non-coding upstream 868729 13347400 ~ 13351299 (+)
XLOC_015279 BX511000.1 non-coding upstream 1096346 13123566 ~ 13123682 (+)
XLOC_015275 BX908750.1 non-coding upstream 1417122 12798366 ~ 12802906 (+)

Expression


Co-expression Network