XLOC_015288


Basic Information

Item Value
gene id XLOC_015288
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 14325056 ~ 14332878 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033500
GTTCTTGGTGAGCCTTCTATTGTCTTAAATTTATGGCTGCTTGTTATGAGTTGAGTATATAAGGAATATTTGTGTAATGGGTCGGAAGGGATCTTGTAGAAAGACACCCCGTTGTAGCATCTCTTATGACTTATGCTGCAACGTACTTCTCTCGTCAGATGTTACCAGCACAGAAGTTGCGGGTTGGGAAGGACCTGCTCCAGCCGGCTGTACTGGCTTATGGTAAAAGTAAGTACTGGTGGACTGGGATGGCTGGAGAAGTGTCTGGTGATCCCTGCTGGAAAAGACAGCACCATCTCACCAGTGATCTTCACCAAACACCTACAACACACAGCAAGACACAAGAGAAGAATAAGGACAGCTTCATTCAATTTAGGTAAAATGTCTTTAGAACTTTAAAATGTGTTCTTACTTAGTGGGATCTGCTCCTTTAAAGTAGGTGCTGATGGTCTCTGTGAAAGCGGCTGCTACTGGTAGTGTGTCCTGGGGTCCCATTGTGAGAGGACTTGGACCTCTGGAACACGCTGAATACAGAAAGCGATTGAATTGTAAGGTTTAAGAGTCATAGCATTCTGGACTTAAGGTATTGTGgcatattattattaccatcacACAACATAATCTGCAAAACTGACTTGGGACAGCTCTGTGGCCCACCTGACACAGAAAGGTTGAGTTCTCTGCCTAGTGTAGGAGTGGAGGCTGCGCTCAGGGAAGTGACAGAGGATATAGAGGATGTGCTCTCAGCTCTTGCCAGAGGAGCAAATGGAGGAGGACTCCAGGAGTGGATGGGGGGGCTGAATGGACGGGCCTGAGGAGAAATGAAACTGTAAAATTATGATGTCTAGTTCAGACTGTCATTCAAGTTCACCCTCCAGTGCTGTTGTTTGTTTATAGTCTGCTGGATCTGGATTTACATGGGTACAATGCATTTACTTACAGCAGATATTTATGCGAACCATGTATTCCTACCAAATTTACTTCAGTATTGTGATGTACGTCCAATGTAAGGAATGCTATTAGAGGGCAGAGTTTTACTGTAGTGCTCTTCCTTTTCATCTCTCAGTTGCACTAAAATAGTGTTAGTTGATGTTAGTGTAAACATAAGAGTTTATTTTTCTATCATTGTTGACGGTTTTGTTTTGAGCATTCATAGGTTATAAATTCAAAAGAATTTTGGTTTCTCTTACAGGGTTCCTTTTTCAACTTTTCCAGCACCTGACAACCACTGTAAATTACGTTTTTATATGATGTATGtactttttcagatttaaatccattgtgctatttaaaaaaaaaacaataaaaaaaaaacaatataacatttcaatttaaattgtaacatttacacatttacaattTACACAATTGTAACTTTGAAGCATAGATTTATtgggatagttaacccaa
>TCONS_00033501
GAAAGACACCCCGTTGTAGCATCTCTTATGACTTATGCTGCAACGTACTTCTCTCGTCAGACATCACTAATGCAGATGTTACCAGCACAGAAGTTGCGGGTTGGGAAGGACCTGCTCCAGCCGGCTGTACTGGCTTATGGTAAAAGTAAGTACTGGTGGACTGGGATGGCTGGAGAAGTGTCTGGTGATCCCTGCTGGAAAAGACAGCACCATCTCACCAGTGATCTTCACCAAACACCTACAACACACAGCAAGACACAAGAGAAGAATAAGGACAGCTTCATTCAATTTAGGTAAAATGTCTTTAGAACTTTAAAATGTGTTCTTACTTAGTGGGATCTGCTCCTTTAAAGTAGGTGCTGATGGTCTCTGTGAAAGCGGCTGCTACTGGTAGTGTGTCCTGGGGTCCCATTGTGAGAGGACTTGGACCTCTGGAACACGCTGAATACAGAAAGCGATTGAATTGTAAGGTTTAAGAGTCATAGCATTCTGGACTTAAGGTATTGTGgcatattattattaccatcacACAACATAATCTGCAAAACTGACTTGGGACAGCTCTGTGGCCCACCTGACACAGAAAGGTTGAGTTCTCTGCCTAGTGTAGGAGTGGAGGCTGCGCTCAGGGAAGTGACAGAGGATATAGAGGATGTGCTCTCAGCTCTTGCCAGAGGAGCAAATGGAGGAGGACTCCAGGAGTGGATGGGGGGGCTGAATGGACGGGCCTGAGGAGAAATGAAACTGTAAAATTATGATGTCTAGTTCAGACTGTCATTCAAGTTCACCCTCCAGTGCTGTTGTTTGTTTATAGTCTGCTGGATCTGGATTTACATGGGTACAATGCATTTACTTACAGCAGATATTTATGCGAACCATGTATTCCTACCAAATTTACTTCAGTATTGTGATGTACGTCCAATGTAAGGAATGCTATTAGAGGGCAGAGTTTTACTGTAGTGCTCTTCCTTTTCATCTCTCAGTTGCACTAAAATAGTGTTAGTTGATGTTAGTGTAAACATAAGAGTTTATTTTTCTATCATTGTTGACGGTTTTGTTTTGAGCATTCATAGGTTATAAATTCAAAAGAATTTTGGTTTCTCTTACAGGGTTCCTTTTTCAACTTTTCCAGCACCTGACAACCACTGTAAATTACGTTTTTATATGATGTATGtactttttcagatttaaatccattgtgctatttaaaaaaaaaacaataaaaaaaaaacaatataacatttcaatttaaattgtaacatttacacatttacaattTACACAATTGTAACTTTGAAGCATAGATTTATtgggatagttaacccaa

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033500 False 1410 lncRNA 0.40 2 14325056 14332878
TCONS_00033501 True 1327 lncRNA 0.40 2 14325154 14332878

Neighbor

gene id symbol gene type direction distance location
XLOC_015287 NA coding upstream 104419 14220028 ~ 14220637 (+)
XLOC_015286 NA coding upstream 362659 13961129 ~ 13962397 (+)
XLOC_015285 NA coding upstream 366480 13950058 ~ 13958576 (+)
XLOC_015284 cpdp coding upstream 384139 13907452 ~ 13940917 (+)
XLOC_015283 zbtb41 coding upstream 524460 13721888 ~ 13800596 (+)
XLOC_015289 NA coding downstream 169180 14502058 ~ 14506622 (+)
XLOC_015290 CR388189.8 coding downstream 327478 14660356 ~ 14660546 (+)
XLOC_015291 CR388189.7 coding downstream 332290 14665168 ~ 14665353 (+)
XLOC_015292 CR388189.3 coding downstream 338119 14670997 ~ 14671173 (+)
XLOC_015293 CR388189.6 coding downstream 342917 14675795 ~ 14675985 (+)
XLOC_015280 NA non-coding upstream 973757 13347400 ~ 13351299 (+)
XLOC_015279 BX511000.1 non-coding upstream 1201374 13123566 ~ 13123682 (+)

Expression


Co-expression Network