Fish Transcriptome and Expression Database

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model fish

XLOC_015290 (CR388189.8)

Basic Information

Item	Value
gene id	XLOC_015290
gene name	CR388189.8
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007113.7
NCBI id	CM002886.2
chromosome length	59640629
location	14660356 ~ 14660546 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030650
ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTGCCCTACCCGGGCACTATATATTAAATTGATTTTTGCAGCTGGGAGATGGGTTAGGGGCTTGCTCCACCCACTCCACGCATCGACCTGGTATTGCAGTACCTCCGGGAACGGTGCACTCATT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000115186

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00030650	True	191	snRNA	0.48	1	14660356	14660546

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_015289	NA	coding	upstream	153734	14502058 ~ 14506622 (+)
XLOC_015288	NA	coding	upstream	327478	14325056 ~ 14332878 (+)
XLOC_015287	NA	coding	upstream	439719	14220028 ~ 14220637 (+)
XLOC_015286	NA	coding	upstream	697959	13961129 ~ 13962397 (+)
XLOC_015285	NA	coding	upstream	701780	13950058 ~ 13958576 (+)
XLOC_015291	CR388189.7	coding	downstream	4622	14665168 ~ 14665353 (+)
XLOC_015292	CR388189.3	coding	downstream	10451	14670997 ~ 14671173 (+)
XLOC_015293	CR388189.6	coding	downstream	15249	14675795 ~ 14675985 (+)
XLOC_015294	CR388189.1	coding	downstream	52848	14713394 ~ 14713538 (+)
XLOC_015295	CR388189.2	coding	downstream	64414	14724960 ~ 14725146 (+)

Expression

Co-expression Network