Fish Transcriptome and Expression Database

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model fish

XLOC_015294 (CR388189.1)

Basic Information

Item	Value
gene id	XLOC_015294
gene name	CR388189.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007113.7
NCBI id	CM002886.2
chromosome length	59640629
location	14713394 ~ 14713538 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030654
ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTATTATATTTGATCTGGTCACGCGGCTGGGACGGCGATCGCCTCTTGGAGGTTCACCCTGGTGCCTGCTTTTGTAGCGGCCACCACAACCTTT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000080774

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00030654	True	145	snRNA	0.50	1	14713394	14713538

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_015293	CR388189.6	coding	upstream	37409	14675795 ~ 14675985 (+)
XLOC_015292	CR388189.3	coding	upstream	42221	14670997 ~ 14671173 (+)
XLOC_015291	CR388189.7	coding	upstream	48041	14665168 ~ 14665353 (+)
XLOC_015290	CR388189.8	coding	upstream	52848	14660356 ~ 14660546 (+)
XLOC_015289	NA	coding	upstream	206772	14502058 ~ 14506622 (+)
XLOC_015295	CR388189.2	coding	downstream	11422	14724960 ~ 14725146 (+)
XLOC_015296	CR388189.4	coding	downstream	53939	14767477 ~ 14767626 (+)
XLOC_015297	CR388189.5	coding	downstream	65566	14779104 ~ 14780075 (+)
XLOC_015298	NA	coding	downstream	77265	14790803 ~ 14791132 (+)
XLOC_015299	NA	coding	downstream	223656	14937194 ~ 14937494 (+)

Expression

Co-expression Network