XLOC_015315 (sh3glb1b)


Basic Information

Item Value
gene id XLOC_015315
gene name sh3glb1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 16173999 ~ 16210623 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030681
CTGCTGTCTACAGTAACGTTAAGTAGGCTGCACACGTTTGAGACGCACTGAGTTTGTCCTTCCTCTTCTCACTCGGCAACAGCTGCTGCCCTGTTAGCAGCCAGCTACCACCACAACAACCACATCGGACAGCCTTagcaaaaactttattttttaaatatttatcttcACAGTAGCGTTTTTTACATGGACTACACGTTTATTACGACAAAGCGAGCTGTATTCATAAGCGTTTTGGCACGACAGAGAGAGGCTACGGCAGGCTAATCTGTCTAGCTTTGCTAACAGGCTTTAGATCAGAACGTTTGAAACATTGCTGTATTCATAAACACAGACATGGAGTTCAATGTTAGACGACTAGCAGCGGACGCGGGCACTTTCCTCAGTCGTGCTGTGCAgTTCACAGAGGAGAAATTCGGGCAGGCAGAGAAGACTGAGCTGGATGCCCATCTGGAGATGCTGCTGAGTCGGGCAGAATCCACCAAACACTGGACAGAGAAGATCATGAAGCAGACAGAAGTTGTGCTACAGCCAAATCCTAATGTCCGGGTGGAGGAGTTCCTTTACGAAATACTGGACAAAAAAGTCCCAACACGTGCCAACAATCACGAGATGCTGGGGCAGTGCATGATTGATTCGGGCCACGAGTTTGGACCTGGAACAGCATATGGTAGTGCTCTTATTAAATGCGGGGAGACGGAAAAGCTGTTAGGCAGTGCAGAGAAAGAGTTCATTCACAGCTCTGCCATCAACTTCCTCACTCCTTTTAGGAACTTCATTGAGGGAGATTTTAAAACCATATTGAAAGAACGGAAACTGCTTCAGAATAAGCGTCTAGATTTGGATGCAGCTAAAAACAGAATGAAGAAGGCTAGAGTGGCTGATGCTCGCTCTGCAGCAGAGACGGAACTAAGGATAGCACAGAGTGAGTTTGACCGGCAGGCCGAGATCACCAGGCTTTTGCTGGAGGGCATCAGCAGCACTCATGCCCATCACTTGCGGTGTCTGAATGATTTTGTGGACGCTCAGGCTGCGTATTACGCCCAGTGTTACCAGTATACAGTCAATCTGCAGAAACAGCTGGGCAGTCAAACTGCAATTTTTCCATCCACGTTCTCTAACAACAATCAGCCGTCTGGCAGCTCGTCCGCCAGTGTGTGCGTACCCACAGCACCACCAGCTGCGTCTCTGCCCGCTCCTCCACCCAGCCAGGCTTCACCTGCTCTCAATGAGCTGCGCAGCTCCTCCGGCACCCGAAAGGCCCGTGTGCTGTATGACTATGACGCCGCCAGCAGCACGGAGCTCTCTCTACTGGCAGACGAGGTGATCACGGTGAGCAGTGTGCCGGGGatggactctgattggctgatggggcAAAGAGGAAATCAGAAAGGCAAAGTGCCAATTACCTACTTGGAGCTGCTCAACTGA
>TCONS_00030680
CTGCTGTCTACAGTAACGTTAAGTAGGCTGCACACGTTTGAGACGCACTGAGTTTGTCCTTCCTCTTCTCACTCGGCAACAGCTGCTGCCCTGTTAGCAGCCAGCTACCACCACAACAACCACATCGGACAGCCTTagcaaaaactttattttttaaatatttatcttcACAGTAGCGTTTTTTACATGGACTACACGTTTATTACGACAAAGCGAGCTGTATTCATAAGCGTTTTGGCACGACAGAGAGAGGCTACGGCAGGCTAATCTGTCTAGCTTTGCTAACAGGCTTTAGATCAGAACGTTTGAAACATTGCTGTATTCATAAACACAGACATGGAGTTCAATGTTAGACGACTAGCAGCGGACGCGGGCACTTTCCTCAGTCGTGCTGTGCAgTTCACAGAGGAGAAATTCGGGCAGGCAGAGAAGACTGAGCTGGATGCCCATCTGGAGATGCTGCTGAGTCGGGCAGAATCCACCAAACACTGGACAGAGAAGATCATGAAGCAGACAGAAGTTGTGCTACAGCCAAATCCTAATGTCCGGGTGGAGGAGTTCCTTTACGAAATACTGGACAAAAAAGTCCCAACACGTGCCAACAATCACGAGATGCTGGGGCAGTGCATGATTGATTCGGGCCACGAGTTTGGACCTGGAACAGCATATGGTAGTGCTCTTATTAAATGCGGGGAGACGGAAAAGCTGTTAGGCAGTGCAGAGAAAGAGTTCATTCACAGCTCTGCCATCAACTTCCTCACTCCTTTTAGGAACTTCATTGAGGGAGATTTTAAAACCATATTGAAAGAACGGAAACTGCTTCAGAATAAGCGTCTAGATTTGGATGCAGCTAAAAACAGAATGAAGAAGGCTAGAGTGGCTGATGCTCGCTCTGCAGAGCTGAACTGCAGTCCTCCGCTGGGAGAGGAGTATGTGGCTCACTTTTCTTACATGCTCAGCTTCTTGCATGTCAGGTGGCTAAAGGCAGAGACGGAACTAAGGATAGCACAGAGTGAGTTTGACCGGCAGGCCGAGATCACCAGGCTTTTGCTGGAGGGCATCAGCAGCACTCATGCCCATCACTTGCGGTGTCTGAATGATTTTGTGGACGCTCAGGCTGCGTATTACGCCCAGTGTTACCAGTATACAGTCAATCTGCAGAAACAGCTGGGCAGTTTTCCATCCACGTTCTCTAACAACAATCAGCCGTCTGGCAGCTCGTCCGCCAGTGTGTGCGTACCCACAGCACCACCAGCTGCGTCTCTGCCCGCTCCTCCACCCAGCCAGGCTTCACCTGCTCTCAATGAGCTGCGCAGCTCCTCCGGCACCCGAAAGGCCCGTGTGCTGTATGACTATGACGCCGCCAGCAGCACGGAGCTCTCTCTACTGGCAGACGAGGTGATCACGGTGAGCAGTGTGCCGGGGatggactctgattggctgatggggcAAAGAGGAAATCAGAAAGGCAAAGTGCCAATTACCTACTTGGAGCTGCTCAACTGA
>TCONS_00030679
CTGCTGTCTACAGTAACGTTAAGTAGGCTGCACACGTTTGAGACGCACTGAGTTTGTCCTTCCTCTTCTCACTCGGCAACAGCTGCTGCCCTGTTAGCAGCCAGCTACCACCACAACAACCACATCGGACAGCCTTagcaaaaactttattttttaaatatttatcttcACAGTAGCGTTTTTTACATGGACTACACGTTTATTACGACAAAGCGAGCTGTATTCATAAGCGTTTTGGCACGACAGAGAGAGGCTACGGCAGGCTAATCTGTCTAGCTTTGCTAACAGGCTTTAGATCAGAACGTTTGAAACATTGCTGTATTCATAAACACAGACATGGAGTTCAATGTTAGACGACTAGCAGCGGACGCGGGCACTTTCCTCAGTCGTGCTGTGCAgTTCACAGAGGAGAAATTCGGGCAGGCAGAGAAGACTGAGCTGGATGCCCATCTGGAGATGCTGCTGAGTCGGGCAGAATCCACCAAACACTGGACAGAGAAGATCATGAAGCAGACAGAAGTTGTGCTACAGCCAAATCCTAATGTCCGGGTGGAGGAGTTCCTTTACGAAATACTGGACAAAAAAGTCCCAACACGTGCCAACAATCACGAGATGCTGGGGCAGTGCATGATTGATTCGGGCCACGAGTTTGGACCTGGAACAGCATATGGTAGTGCTCTTATTAAATGCGGGGAGACGGAAAAGCTGTTAGGCAGTGCAGAGAAAGAGTTCATTCACAGCTCTGCCATCAACTTCCTCACTCCTTTTAGGAACTTCATTGAGGGAGATTTTAAAACCATATTGAAAGAACGGAAACTGCTTCAGAATAAGCGTCTAGATTTGGATGCAGCTAAAAACAGAATGAAGAAGGCTAGAGTGGCTGATGCTCGCTCTGCAGAGCTGAACTGCAGTCCTCCGCTGGGAGAGGAGTATGTGGCTCACTTTTCTTACATGCTCAGCTTCTTGCATGTCAGGTGGCTAAAGCTGTGGACTGAGGAGGTGAAGCAGGCAGAGACGGAACTAAGGATAGCACAGAGTGAGTTTGACCGGCAGGCCGAGATCACCAGGCTTTTGCTGGAGGGCATCAGCAGCACTCATGCCCATCACTTGCGGTGTCTGAATGATTTTGTGGACGCTCAGGCTGCGTATTACGCCCAGTGTTACCAGTATACAGTCAATCTGCAGAAACAGCTGGGCAGTTTTCCATCCACGTTCTCTAACAACAATCAGCCGTCTGGCAGCTCGTCCGCCAGTGTGTGCGTACCCACAGCACCACCAGCTGCGTCTCTGCCCGCTCCTCCACCCAGCCAGGCTTCACCTGCTCTCAATGAGCTGCGCAGCTCCTCCGGCACCCGAAAGGCCCGTGTGCTGTATGACTATGACGCCGCCAGCAGCACGGAGCTCTCTCTACTGGCAGACGAGGTGATCACGGTGAGCAGTGTGCCGGGGatggactctgattggctgatggggcAAAGAGGAAATCAGAAAGGCAAAGTGCCAATTACCTACTTGGAGCTGCTCAACTGA
>TCONS_00030682
CTGAGTTTGTCCTTCCTCTTCTCACTCGGCAACAGCTGCTGCCCTGTTAGCAGCCAGCTACCACCACAACAACCACATCGGACAGCCTTagcaaaaactttattttttaaatatttatcttcACAGTAGCGTTTTTTACATGGACTACACGTTTATTACGACAAAGCGAGCTGTATTCATAAGCGTTTTGGCACGACAGAGAGAGGCTACGGCAGGCTAATCTGTCTAGCTTTGCTAACAGGCTTTAGATCAGAACGTTTGAAACATTGCTGTATTCATAAACACAGACATGGAGTTCAATGTTAGACGACTAGCAGCGGACGCGGGCACTTTCCTCAGTCGTGCTGTGCAgTTCACAGAGGAGAAATTCGGGCAGGCAGAGAAGACTGAGCTGGATGCCCATCTGGAGATGCTGCTGAGTCGGGCAGAATCCACCAAACACTGGACAGAGAAGATCATGAAGCAGACAGAAGTTGTGCTACAGCCAAATCCTAATGTCCGGGTGGAGGAGTTCCTTTACGAAATACTGGACAAAAAAGTCCCAACACGTGCCAACAATCACGAGATGCTGGGGCAGTGCATGATTGATTCGGGCCACGAGTTTGGACCTGGAACAGCATATGGTAGTGCTCTTATTAAATGCGGGGAGACGGAAAAGCTGTTAGGCAGTGCAGAGAAAGAGTTCATTCACAGCTCTGCCATCAACTTCCTCACTCCTTTTAGGAACTTCATTGAGGGAGATTTTAAAACCATATTGAAAGAACGGAAACTGCTTCAGAATAAGCGTCTAGATTTGGATGCAGCTAAAAACAGAATGAAGAAGGCTAGAGTGGCTGATGCTCGCTCTGCAGCAGAGACGGAACTAAGGATAGCACAGAGTGAGTTTGACCGGCAGGCCGAGATCACCAGGCTTTTGCTGGAGGGCATCAGCAGCACTCATGCCCATCACTTGCGGTGTCTGAATGATTTTGTGGACGCTCAGGCTGCGTATTACGCCCAGTGTTACCAGTATACAGTCAATCTGCAGAAACAGCTGGGCAGTTTTCCATCCACGTTCTCTAACAACAATCAGCCGTCTGGCAGCTCGTCCGCCAGTGTGTGCGTACCCACAGCACCACCAGCTGCGTCTCTGCCCGCTCCTCCACCCAGCCAGGCTTCACCTGCTCTCAATGAGCTGCGCAGCTCCTCCGGCACCCGAAAGGCCCGTGTGCTGTATGACTATGACGCCGCCAGCAGCACGGAGCTCTCTCTACTGGCAGACGAGGTGATCACGGTGAGCAGTGTGCCGGGGatggactctgattggctgatggggcAAAGAGGAAATCAGAAAGGCAAAGTGCCAATTACCTACTTGGAGCTGCTCAACTGAAATCAGCAAAACCTGTGAAAACAAATTGACACTGCAGGTGTGTGTTTGACTAGAATAACACTCCATGATGTGATCAGAGAAAGATTTTAATGTAGCGCAGAGCAATATATCAGTCTTCTACACTGCCATGTGAACGTCCTCTCCTGCCATTCAGGAGGCGTCACAGTAGCCTTACAGCAAAGAAAAACTCCACCATCGCCAACTATTCAGCAGATTTATGTGccaatggatttattttttactgctAAACTAATTGATTTTGCTATAATGTGGTTTGatgctttattaaatattatatgaaCACAT
>TCONS_00030683
GGCCTGCCTTAAGAGGATGCATGTGGTCTCATCTGACTCTTGCTGGTCTTAATCGAATTTGTCTGATGTGAGTAGATGTCCGGGTGGAGGAGTTCCTTTACGAAATACTGGACAAAAAAGTCCCAACACGTGCCAACAATCACGAGATGCTGGGGCAGTGCATGATTGATTCGGGCCACGAGTTTGGACCTGGAACAGCATATGGTAGTGCTCTTATTAAATGCGGGGAGACGGAAAAGCTGTTAGGCAGTGCAGAGAAAGAGTTCATTCACAGCTCTGCCATCAACTTCCTCACTCCTTTTAGGAACTTCATTGAGGGAGATTTTAAAACCATATTGAAAGAACGGAAACTGCTTCAGAATAAGCGTCTAGATTTGGATGCAGCTAAAAACAGAATGAAGAAGGCTAGAGTGGCTGATGCTCGCTCTGCAGCAGAGACGGAACTAAGGATAGCACAGAGTGAGTTTGACCGGCAGGCCGAGATCACCAGGCTTTTGCTGGAGGGCATCAGCAGCACTCATGCCCATCACTTGCGGTGTCTGAATGATTTTGTGGACGCTCAGGCTGCGTATTACGCCCAGTGTTACCAGTATACAGTCAATCTGCAGAAACAGCTGGGCAGTTTTCCATCCACGTTCTCTAACAACAATCAGCCGTCTGGCAGCTCGTCCGCCAGTGTGTGCGTACCCACAGCACCACCAGCTGCGTCTCTGCCCGCTCCTCCACCCAGCCAGGCTTCACCTGCTCTCAATGAGCTGCGCAGCTCCTCCGGCACCCGAAAGGCCCGTGTGCTGTATGACTATGACGCCGCCAGCAGCACGGAGCTCT
>TCONS_00030684
TAGATTTTTAGTGACAGCAATTTTGACATTAAATCAACAGACTTAGTCACTAGACAGATTGACCATGCTTGTTTTAGGCTTTAACTCAATTTTGACCAAATTCTTAGTTACTGGGCTTTGCCTTTGTACTTGGGCggtatttgtgtttgtgcatgtgctcTCACACCTGTTGTGTTTGACGGTCATGTGTCATTCAAATCTCTTGGTTGCGTGATTCACATTTTTCATCATAGACGGTATAAGCTAGCTGTTTTTGGTTCCTCCGTTCAGTGAATGAGCCTGTACAGTACATGAATGCTGACGCCATTCTCCTGCGTAAGGACTTGAGATGGTAGTGAACGTTGTCAGTAGTGATCAGTTTGTATGGTATAAGTTGATCTGACCGGTTTCTTACTGTTTTCGAATGCTGGCCAGCTGTGGACTGAGGAGGTGAAGCAGGTGAGTCCATCTGTCGATCAAACCACTTATTCTGAGATCAGAAATACACGTATATCTTTGTGTGCTAGTGCAGTCTGATATAAACTCACCCGGCCACGTGAATGAGGAGCTGCTTTGACATGCAGTTTCTGCTTATGTCCAGCAGAGGGGGCTGCAGAGTTGTTTatgtttttcacctttattttgcaGCTCAAGCAAAACCTACATGTGATGTCTTGTACTGTTGATGTGGATCAGTCAGTTAtttctttttgtgtgtttgtgtttccctCAGGCAGAGACGGAACTAAGGATAGCACAGAGTGAGTTTGACCGGCAGGCCGAGATCACCAGGCTTTTGCTGGAGGGCATCAGCAGCACTCATGCCCATCACTTGCG
>TCONS_00030685
TGCTGTATGACTATGACGCCGCCAGCAGCACGGAGCTCTCTCTACTGGCAGACGAGGTGATCACGGTGAGCAGTGTGCCGGGGatggactctgattggctgatggggcAAAGAGGAAATCAGAAAGGCAAAGTGCCAATTACCTACTTGGAGCTGCTCAACTGAAATCAGCAAAACCTGTGAAAACAAATTGACACTGCAGGTTCtttggaatttccccaaccaaTCGCAGAGCCAGGGGGACCAGAGTTAGTGCTCCGTCTTGCCCACCCCCCCACAAAGTCTATACAAAGTCTATTCTCACAAgagtatatttttggcaataacCAAAATATGTATTGTACAGGTCAAAATATacaccaaaaatcattagaatattaaagaAAGCTCACTCACAGAGAAAAGCCTTATGAAAGTGTGTAGAAACAATATAACCTGgatgaattaaattttttagaCCCCTTTAATTACGTAGCCACTTTAAAAactatattgaaaataaaataaacctggaTGATTCAATACTGGAATTTTTTACAAATGCCAACAAAAGCAGTTGGAGTAAAGGTATAATTTCAAAACTTTAGAAAGGATTTAGATTAAATAACCCCCACACAacgaaatatgtttaaaaaaaaaaaa

Function

symbol description
sh3glb1b Predicted to act upstream of or within apoptotic process. Predicted to be located in Golgi membrane and mitochondrial outer membrane. Orthologous to human SH3GLB1 (SH3 domain containing GRB2 like, endophilin B1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6851 Predicted to act upstream of or within apoptotic process. Predicted to be located in Golgi membrane and mitochondrial outer membrane. Orthologous to human SH3GLB1 (SH3 domain containing GRB2 like, endophilin B1).

Ensembl:

ensembl_id ENSDARG00000010956

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030681 False 1431 mRNA 0.50 10 16173999 16193890
TCONS_00030680 False 1506 mRNA 0.50 10 16173999 16193890
TCONS_00030679 False 1530 mRNA 0.50 11 16173999 16193890
TCONS_00030682 False 1678 mRNA 0.48 9 16174046 16194196
TCONS_00030683 False 828 lncRNA 0.52 6 16177415 16191890
TCONS_00030684 False 816 lncRNA 0.44 2 16188494 16191380
TCONS_00030685 True 641 mRNA 0.39 3 16191852 16210623

Neighbor

gene id symbol gene type direction distance location
XLOC_015314 selenoj coding upstream 1742 16160906 ~ 16172257 (+)
XLOC_015311 vav3b coding upstream 228846 15776156 ~ 15945153 (+)
XLOC_015313 BX510321.1 coding upstream 305459 15868425 ~ 15868540 (+)
XLOC_015312 BX682548.1 coding upstream 329963 15833553 ~ 15844036 (+)
XLOC_015310 amy2a coding upstream 547027 15612755 ~ 15626972 (+)
XLOC_015316 zgc:110269 coding downstream 239004 16449627 ~ 16458472 (+)
XLOC_015317 agfg1b coding downstream 249698 16460321 ~ 16479291 (+)
XLOC_015318 fbxo36b coding downstream 271715 16482338 ~ 16485408 (+)
XLOC_015319 CR377211.1 coding downstream 276820 16487443 ~ 16488660 (+)
XLOC_015320 NA coding downstream 316575 16527198 ~ 16528680 (+)
XLOC_015308 NA non-coding upstream 693274 15471683 ~ 15480725 (+)
XLOC_015306 CR450809.1 non-coding upstream 1000616 15173267 ~ 15173383 (+)
XLOC_015301 CR788249.1 non-coding upstream 1202980 14970007 ~ 14971019 (+)
XLOC_015329 CU462977.2 non-coding downstream 614136 16824759 ~ 16824819 (+)
XLOC_015330 NA non-coding downstream 619066 16829689 ~ 16829764 (+)
XLOC_015332 NA non-coding downstream 696123 16906746 ~ 16911593 (+)
XLOC_015335 NA non-coding downstream 1125194 17335817 ~ 17359020 (+)

Expression


Co-expression Network