XLOC_015334 (ptger4c)


Basic Information

Item Value
gene id XLOC_015334
gene name ptger4c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 17181777 ~ 17186371 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030718
TATGTTTGGCGTCGGAGTCCTCGGAAACCTTGTAGCTATCGTGGTGCTTTGCATCTCCAAGAAAGAGCAGAAGGAGACCACCTTCTACACTCTGGTGTGCGGGATGGCCATCACAGACCTGCTGGGCACCTGCTTCACCAGTCCGGTTGTCATCGCCACTTATATCGCGGGCAGGTGGCCGGGTGGAGCGCTCCTGTGCCATTTCTTCTCCTTTTCCATGCTGTTCTTCGGGTCTGCTGGGATGTCTATTCTGTGCGCAATGTCCGTGGAAAGATATTTGGCCATAAACCACGCGTACTTTTACTCTCAACACGTGGACCGGGCTATGGCTCGGTTTGCGCTGATGGCAACCTATCTGGCCAATATCGTGCTGTGTATCATGCCCAGTTTTGGCTTCGGAAAGCACAAGAGACACTTTCCGGGAACTTGGTGCTTCTTGGACTGGCGCGCCATGGACTCGGTCGGCGCCTCGTACACGTTTCTGTACGGTGGTTTCATGCTGCTGCTGATCGCCGTTACAGTCTTGTGCAATTTCGCCGTGTGTCGTTCACTCGTCGGGATGAGTAAAATGAGTCGGATGGTAAGAGCAGAGGTACCCGGACACGCAGGGTCAAGGCGCGGATTCAGGTTAACATCTGCAGCGGAGATCCAGATGTTCTGGCTGTTGATATTAATGACTATTGTGTTCCTGATATGCTCCATCCCTTTAGTGGTGCGCATCTTCGTCAACCAGCTGTACGATCCTGCTTATATTTCCTCAGGCAAAAGTCCAGACTATCGCAGTGATCTCCTGGCTATACGATTCGCCTCCTTCAACCCCATCCTGGATCCATGGGTTTATATTCTGTGCAGAAAAAATTTGTTAACCAAAGGCTGTGCGCGACTCAAGCGTACCATCAGACACAGGAAAGGGGATCACAGTCGTGTTTTGGGTTGGACGGATGGTCAACACTCACCTCCATCGTTGGTACAAAGCAACTGCACCAGTTACGCGTCACTACGCACAGCAATCTGTAGAAATGACGTGGGTAAACAGAACTGCATGAACACTAAATCTTATCTAGACTTAACCCTTCGCCAGGCGTGGGACTTTGATACAGCTCTCGCTCAGTTTCATCCTTTCAGTGTCGAGCAAAACACTGTAATGGGTTTTGATGAAGATGAAGCAACATCAAGTCCCAAACTCATCGCCAAGACTGTTATGGCATTACCAGCCACTCAAATATTAGAGAATAAAGCTGAAATAGTGACCTGCACATTCAGTACACCTAGTTCTTGTCTATCAGAAAAGTGCATGAGACAATGACCTAGACGTCAATTTAGATTTCTTCTGTGAAGCActatgagagaaaaaaagagacatTTGTGCTTTAGGTAACATTCACAAATAATTCTGTGAATTTGCTTAATTTTGAACTGGATTGATCCGATTTTAGGATTAAACCATAAACGGAGGCACTTGTAATGTCTGTTTTGACATGAATGTGTTTGATGTGTGGTAAAGGATTTGATGCTTTTTCTTCAATACTGTGCCATGTTGCATGCTGGGTTTTACTTGTAAAACtgtgaataatttattaaagGTGCAATTTATTTTATCAC

Function

symbol description
ptger4c Enables prostaglandin E receptor activity. Predicted to be involved in several processes, including adenylate cyclase-activating G protein-coupled receptor signaling pathway; cellular response to prostaglandin E stimulus; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in brain; intestine; and ovarian follicle stage III. Human ortholog(s) of this gene implicated in ankylosing spondylitis; arteriosclerosis; and ulcerative colitis. Orthologous to human PTGER4 (prostaglandin E receptor 4).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0006954 inflammatory response biological_process
GO:0071380 cellular response to prostaglandin E stimulus biological_process
GO:0050728 negative regulation of inflammatory response biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004957 prostaglandin E receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-128 Enables prostaglandin E receptor activity. Predicted to be involved in several processes, including adenylate cyclase-activating G protein-coupled receptor signaling pathway; cellular response to prostaglandin E stimulus; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in brain; intestine; and ovarian follicle stage III. Human ortholog(s) of this gene implicated in ankylosing spondylitis; arteriosclerosis; and ulcerative colitis. Orthologous to human PTGER4 (prostaglandin E receptor 4).

Ensembl:

ensembl_id ENSDARG00000079907

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030718 True 1602 mRNA 0.47 2 17181777 17186371

Neighbor

gene id symbol gene type direction distance location
XLOC_015333 thpo coding upstream 109218 17055069 ~ 17072559 (+)
XLOC_015332 NA coding upstream 270184 16906746 ~ 16911593 (+)
XLOC_015331 fam131a coding upstream 313840 16846772 ~ 16867937 (+)
XLOC_015328 eif4g1a coding upstream 339078 16798652 ~ 16842699 (+)
XLOC_015335 NA coding downstream 149446 17335817 ~ 17359020 (+)
XLOC_015336 NA coding downstream 261777 17448148 ~ 17451433 (+)
XLOC_015337 BX640408.1 coding downstream 265285 17451656 ~ 17452724 (+)
XLOC_015338 pimr199 coding downstream 321952 17508323 ~ 17511179 (+)
XLOC_015339 pimr196 coding downstream 337907 17524278 ~ 17575605 (+)
XLOC_015330 NA non-coding upstream 352013 16829689 ~ 16829764 (+)
XLOC_015329 CU462977.2 non-coding upstream 356958 16824759 ~ 16824819 (+)
XLOC_015320 NA non-coding upstream 653097 16527198 ~ 16528680 (+)
XLOC_015313 BX510321.1 non-coding upstream 1313237 15868425 ~ 15868540 (+)
XLOC_015341 NA non-coding downstream 425076 17611447 ~ 17613870 (+)
XLOC_015342 BX248089.1 non-coding downstream 471587 17657958 ~ 17658076 (+)
XLOC_015343 BX248089.2 non-coding downstream 521121 17707492 ~ 17714820 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location