XLOC_015357 (pimr50)


Basic Information

Item Value
gene id XLOC_015357
gene name pimr50
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19578079 ~ 19580242 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030750
TATGACTCGATATATAAACACTGAAAGCGCTGAAAATCttggttgagagacgaggcgaATTCAGAGACTTGCAGAGACTTTTGTGCTGAAACTGATTCTTCAAGAAGCCCTGAGGATTTCTGAGAGGAGACTTTCTTTCCAGGACGACATCGGAGGATTTTTTCTTTGAAaagaatatataattattttaatcgtTCAGATTACTTGTTAAGACGCTTATTTTATtgctcttttgtcatttctgTTTTAGTTTGTGCCTTTTTTTCTACTTGTTTGTTTGACATTTCAGTTGTCTTTTATTGATTTGTCATTATATTTTCTCTTGTTTGTATTTTCTCTTGTGGTGGAGTTTTGCAGGACGGTCTTCATGGCGCAAATGGCTGAAAGAGGAAGCCGCTCCAGATCCAGGAGTGCAGCTTTCACCCAGACAGCAGTTCAGGACACAGAGACACGGGACGCTTCTGGTGGGCTTCCTGGTTATTTGGCTCCTCTGTCCTCCCTGTTGGCCGATTCAGTGTCCACAGATCAGAGGAAGAGGAAGCAGCAAACGGCGTCCACCTCGTCTAGGAGACCtgccaaacgctctcgcagagACCAATATGCCaagggcccgttgctgggacgaggcagattcggctctgtgtttgctgggatccgcaggtctgatggactgccaGTGGCCATCAAGTACGTGTCTAAAGAGCCGACGGACACCAGACTGAAAGTTGACGGTCAGGGTCGTCTGCCACTGGAGGTGGCGTTGATGACCCGCGTCTCTTCAGCTCCTGTctgccccagtgtcctgcagctgctggactggtttgaccaTCGCAGACGCTACGTCCTGATCCTGGAGCGTCCGGCTccttgccaagatctccagagtttctgtgaggagaacggctgtctggacGAGCCtctggccaagaaagtgctggtgcagctgatcgcggcgctgaaacactgcgagagccgccGCGTCCTGCACCGAGACGTCAAGCCAGagaacctgctgatctccacagaCTCACacgacatcaagctgctggacttcggctgtggagatctgaTGAAGGACTCGGCCTACAGATACTTTGCAGGCACTCCAGCTTTTGCTCCTCCTGAGTGGTTTCGGCATCATCGCTATCATGCCTCTCCACTGACAGTCTGGTCCATCGGCGTGACTCTCTACAACATCCTGTGCGACTGTTTCCCATTCAGAGGCGCACAGAGGGTCACGTCCAAAAGCAGACTGCACTTCCCGAGGAAGCTGTCGACAGGTAAGAGATGAAGATG
>TCONS_00030751
ATGGCGCAAATGGCTGAAAGAGGAAGCCGCTCCAGATCCAGGAGTGCAGCTTTCACCCAGACAGCAGTTCAGGACACAGAGACACGGGACGCTTCTGGTGGGCTTCCTGGTTATTTGGCTCCTCTGTCCTCCCTGTTGGCCGATTCAGTGTCCACAGATCAGAGGAAGAGGAAGCAGCAAACGGCGTCCACCTCGTCTAGGAGACCtgccaaacgctctcgcagagACCAATATGCCaagggcccgttgctgggacgaggcagattcggctctgtgtttgctgggatccgcaggtctgatggactgccaGTGGCCATCAAGTACGTGTCTAAAGAGCCGACGGACACCAGACTGAAAGTTGACGGTCAGGGTCGTCTGCCACTGGAGGTGGCGTTGATGACCCGCGTCTCTTCAGCTCCTGTctgccccagtgtcctgcagctgctggactggtttgaccaTCGCAGACGCTACGTCCTGATCCTGGAGCGTCCGGCTccttgccaagatctccagagtttctgtgaggagaacggctgtctggacGAGCCtctggccaagaaagtgctggtgcagctgatcgcggcgctgaaacactgcgagagccgccGCGTCCTGCACCGAGACGTCAAGCCAGagaacctgctgatctccacagaCTCACacgacatcaagctgctggacttcggctgtggagatctgaTGAAGGACTCGGCCTACAGATACTTTGCAGGCACTCCAGCTTTTGCTCCTCCTGAGTGGTTTCGGCATCATCGCTATCATGCCTCTCCACTGACAGTCTGGTCCATCGGCGTGACTCTCTACAACATCCTGTGCGACTGTTTCCCATTCAGAGGCGCACAGAGGGTCACGTCCAAAAGCAGACTGCACTTCCCGAGGAAGCTGTCGACAGagtgccgtcagctgattcgctggtgtctcagtgcagcgCCAGCAGATCGGCCCAGTTTAGATGACATTGAGCGCCACCCCTGGTTGCAGTGA

Function

symbol description
pimr50 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-463 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000095093

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030750 False 1296 mRNA 0.51 6 19578079 19580088
TCONS_00030751 True 1005 mRNA 0.58 7 19578446 19580242

Neighbor

gene id symbol gene type direction distance location
XLOC_015356 BX664750.6 coding upstream 2923 19575059 ~ 19575156 (+)
XLOC_015355 pimr140 coding upstream 14660 19559047 ~ 19563419 (+)
XLOC_015354 pimr49 coding upstream 53832 19522082 ~ 19524247 (+)
XLOC_015353 BX664750.4 coding upstream 58897 19519085 ~ 19519182 (+)
XLOC_015352 pimr141 coding upstream 69943 19505263 ~ 19508136 (+)
XLOC_015358 NA coding downstream 9802 19590044 ~ 19595194 (+)
XLOC_015359 NA coding downstream 34711 19614953 ~ 19616789 (+)
XLOC_015360 BX088713.3 coding downstream 48455 19628697 ~ 19628794 (+)
XLOC_015361 pimr54 coding downstream 53251 19633493 ~ 19635654 (+)
XLOC_015362 NA coding downstream 60710 19640952 ~ 19649341 (+)
XLOC_015347 CR854990.1 non-coding upstream 1075655 18502308 ~ 18502424 (+)
XLOC_015346 CT737196.1 non-coding upstream 1171962 18405569 ~ 18406117 (+)
XLOC_015345 NA non-coding upstream 1242368 18332763 ~ 18335711 (+)
XLOC_015363 NA non-coding downstream 79468 19659710 ~ 19679329 (+)

Expression


Co-expression Network