XLOC_015361 (pimr54)


Basic Information

Item Value
gene id XLOC_015361
gene name pimr54
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19633493 ~ 19635654 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030753
TATGACTCGATATAAAAACACTGAAAGCGCTGAAAATCttggttgagagacgaggcgaATTCAGAGACTTGCAGAGacttttgagctgaaactgatTCTTCAAGAAGCCCTGAGGATTTCTGAGAGGAGACTTTCTTTCCAGGACGACATCGGAggatattttctttgaaaagaatatataattattttaatcgtTCAGATTACTTGTTAAGACGCTTATTTTATtgctcttttgtcatttctgTTTTAGTTTGTGTATTTTTCTACTTGTTTGTTTGACATTTCAGTTGTCTTTTATTGATTTGTCATTATATTTTCTCTTGTTTGTATTTTCTCTTGTGGTGGAGTTTTGCAGGACGGTCTTCATGGCGCAAATGGCTGAAAGAGGAAGCCGCTCCAGATCCAGGAGTGCAGCTTTCACCCAGACAGCAGTTCAGGACACAGAGACACGGGACGCTTCTGGTGGGCTTCCTGGTTATTTGGCTCCTCTGTCCTCCCTGTTGGCCGATTCAGTGTCCACAGATCAGAGGAAGAGGAAGCAGCAAACGGCGTCCACCTCGTCTAGGAGACCtgccaaacgctctcgcagagACCAATATGCCaagggcccgttgctgggacgaggcggattcggctctgtgtttgctgggatccgcaggtctgatggactgccaGTGGCCATCAAGTACGTGTCTAAAGAGCCGACGGACACCAGACTGAAAGTTGACGGTCAGGGTCGTCTGCCGCTGGAAGTGGCGTTGATGACCCGCGTCTCTTCAGCTCCTGTctgccccagtgtcctgcagctgctggactggtttgaccaTCGCAGACGCTACGTCCTGATCCTGGAGCGTCCAGCTccttgccaagatctccagagtttctgtgaggagaacggctgtctggacGAGCCtctggccaagaaagtgctggtgcagctgatcgcggcgctgaaacactgcgagagccgccGCGTCCTGCACCGAGACGTCAAGCCAGagaacctgctgatctccacagaCTCACacgacatcaagctgctggacttcggctgtggagatctgaTGAAGGACTCGGCCTACAGATACTTTGCAGGCACTCCAGCTTTTGCTCCTCCTGAGTGGTTTCGGCATCATCGCTATCATGCCTCTCCACTGACAGTCTGGTCCATCGGCGTGACTCTCTACAACATCCTGTGCGACTGTTTCCCCTTCAGAGGCGCACAGAGGGTCACGTCCAAAAGCAGACTACACTTCCCGAGGAAGCTGTCGACAGagtgccgtcagctgattcgctggtgtctcagtgcagcgCCAGCAGATCGGCCCAGTTTAGATGAGATTGAGCGCCACCCCTGGTTGCAGTGA

Function

symbol description
pimr54 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-425 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000057284

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030753 True 1370 mRNA 0.52 7 19633493 19635654

Neighbor

gene id symbol gene type direction distance location
XLOC_015360 BX088713.3 coding upstream 4699 19628697 ~ 19628794 (+)
XLOC_015359 NA coding upstream 16704 19614953 ~ 19616789 (+)
XLOC_015358 NA coding upstream 38299 19590044 ~ 19595194 (+)
XLOC_015357 pimr50 coding upstream 53251 19578079 ~ 19580242 (+)
XLOC_015356 BX664750.6 coding upstream 58337 19575059 ~ 19575156 (+)
XLOC_015362 NA coding downstream 5298 19640952 ~ 19649341 (+)
XLOC_015363 NA coding downstream 24056 19659710 ~ 19679329 (+)
XLOC_015364 ptbp2b coding downstream 141492 19777146 ~ 19795593 (+)
XLOC_015365 plppr4a coding downstream 695791 20331445 ~ 20371803 (+)
XLOC_015366 palmda coding downstream 770745 20406399 ~ 20428140 (+)
XLOC_015353 BX664750.4 non-coding upstream 114311 19519085 ~ 19519182 (+)
XLOC_015368 NA non-coding downstream 836496 20472150 ~ 20526830 (+)
XLOC_015371 AL954134.2 non-coding downstream 996567 20632221 ~ 20633527 (+)
XLOC_015372 rxrga non-coding downstream 1090030 20725684 ~ 20776841 (+)

Expression


Co-expression Network