XLOC_015362


Basic Information

Item Value
gene id XLOC_015362
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19640952 ~ 19649341 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033514
GTTCAATAACAAACCGGTGATATGTGGACGTTAGTATGAGAGCAAGttaaCGAATAATGATACCTTTTACAGGAGGAAAATGTCAAAGGAAGCTTTTGATGAATTGTCTGTTTTATCCGCCATATATTGCGAGCAAGGCGAATTCGAAGTGCTGGAAGAGTCACCTGAAAAAGGAGTTGTGTTCCGCGTACACACGCTAATAGACAACAACGAGAAGACATCGCTAGACATCATTTTCCACATCTCTCCTGAATACCCCAACACTCCTCCAGATATCAGCATCAGTTCCAACCACTTATCAAGGAGACAGTGTCATGACCTGAGACGCAGTTTACTGGACACAGCACAGTCACTTCCAGCAGAACCCATGGTCCATGGTTTAATGCTGTGGCTTCAGGAAAATTTCTCTGACTTAATCAAAACATCAAGCTGCCATTCAGCCGAGGTCAGACCAGAGACTACGGAGGAAACCTGGACCGCTTTACTACATTTAGATCCAACATGATCACATCCAAAGCAAAGTACATCAAACTGATCGAAAAATGGACTTTAGAGCTGCGCCTCACCGGGAGACTCTTCACAGGGAAGCTGATATTGATTCTGCTGCAGGGAACAAAGGAAAATATTAAACAATATATCCACCTTCTGAAGAGTGTGAAAGTGGATGTGGATTCTTCTGGGAAGCGCTGTAAGGAGAAGATGATGAGTGTCCTGTGTGAGATTCCAAAACCAGAGGACAAGATAATGATGACTACGTTTGAAGTAAAAGACATTTTATCGCTTGATGACCTCAGAAGGGAGTTTGATCTCATTGGACTAAATGAGCTTTATCATCAGTTTGTGTCTTCACTCACCTGATTGGACAGCTGCTGTTTAAATCCCTCTCCCCTCCTCTGAAGTACTGTTCACAACTTTTTTAACTGCAAATAGAAAacataaaatgcaatttaattaaaGGGGTGTTCCACACTGTATTTTTAAGggttggttgtgtttataagatgcaacgCAGTGTGTgcttatgcttcatttgtagaaaatcacgatatttgttcatttatcttactttaattatatacagccACTCAGCTATCATGAAaaccactgtcatatttcctagttcctccgaaaggccCGCCCTaaaaaggctctgattggtcagctaacataatgtgctgtgattcgcggatcggcttCACATCACCAAGAAAAGTGTCACGCGCCTACAAGCAGATCAGCATGTCACAATAAGTTTGATATCCACTGACATGTATTGTCAaataactgaatattatttattgtggCAATACATACTAAAGGTATAACtacgaataaataaaataaatgcttttaatttaaagtGGAGTAGTCCAGCATATAAAGTAACTTGCGATGCAATAAATCATGTTAACAGCTGCATAATGATTAAATATTGTTTGCGTG
>TCONS_00030754
GTTCAATAACAAACCGGTGATATGTGGACGTTAGTATGAGAGCAAGttaaCGAATAATGATACCTTTTACAGGAGGAAAATGTCAAAGGAAGCTTTTGATGAATTGTCTGTTTTATCCGCCATATATTGCGAGCAAGGCGAATTCGAAGTGCTGGAAGAGTCACCTGAAAAAGGAGTTGTGTTCCGCGTACACACGCTAATAGACAACAACGAGAAGACATCGCTAGACATCATTTTCCACATCTCTCCTGAATACCCCAACACTCCTCCAGATATCAGCATCAGTTCCAACCACTTATCAAGGAGACAGTGTCATGACCTGAGACGCAGTTTACTGGACACAGCACAGTCACTTCCAGCAGAACCCATGGTCCATGGTTTAATGCTGTGGCTTCAGGAAAATTTCTCTGACTTAATCAAAACATCAAGCTGCCATTCAGCCGAGGTCAGACCAGAGACTACGGAGGAAACCTGGACCGCTTTACTACATTTAGATCCAACATGATCACATGAGATCCAAAGCAAAGTACATCAAACTGATCGAAAAATGGACTTTAGAGCTGCGCCTCACCGGGAGACTCTTCACAGGGAAGCTGATATTGATTCTGCTGCAGGGAACAAAGGAAAATATTAAACAATATATCCACCTTCTGAAGAGTGTGAAAGTGGATGTGGATTCTTCTGGGAAGCGCTGTAAGGAGAAGATGATGAGTGTCCTGTGTGAGATTCCAAAACCAGAGGACAAGATAATGATGACTACGTTTGAAGTAAAAGACATTTTATCGCTTGATGACCTCAGAAGGGAGTTTGATCTCATTGGACTAAATGAGCTTTATCATCAGTTTGTGTCTTCACTCACCTGATTGGACAGCTGCTGTTTAAATCCCTCTCCCCTCCTCTGAAGTACTGTTCACAACTTTTTTAACTGCAAATAGAAAacataaaatgcaatttaattaaaGGGGTGTTCCACACTGTATTTTTAAGggttggttgtgtttataagatgcaacgCAGTGTGTgcttatgcttcatttgtagaaaatcacgatatttgttcatttatcttactttaattatatacagccACTCAGCTATCATGAAaaccactgtcatatttcctagttcctccgaaaggccCGCCCTaaaaaggctctgattggtcagctaacataatgtgctgtgattcgcggatcggcttCACATCACCAAGAAAAGTGTCACGCGCCTACAAGCAGATCAGCATGTCACAATAAGTTTGATATCCACTGACATGTATTGTCAaataactgaatattatttattgtggCAATACATACTAAAGGTATAACtacgaataaataaaataaatgcttttaatttaaagtGGAGTAGTCCAGCATATAAAGTAACTTGCGATGCAATAAATCATGTTAACAGCTGCATAATGATTAAATATTGTTTGCGTG

Function

GO:

id name namespace
GO:0140104 molecular carrier activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-040426-1723 Predicted to be involved in positive regulation of protein sumoylation. Predicted to act upstream of or within negative regulation of NF-kappaB transcription factor activity and positive regulation of hypoxia-inducible factor-1alpha signaling pathway. Predicted to be located in cytoplasm and nucleus. Is expressed in nervous system and pancreatic system. Orthologous to human RWDD3 (RWD domain containing 3).

Ensembl:

ensembl_id ENSDARG00000057315

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033514 False 1443 lncRNA 0.40 6 19640952 19649341
TCONS_00030754 True 1448 unprocessed_pseudogene 0.40 5 19640952 19649341

Neighbor

gene id symbol gene type direction distance location
XLOC_015361 pimr54 coding upstream 5298 19633493 ~ 19635654 (+)
XLOC_015360 BX088713.3 coding upstream 12158 19628697 ~ 19628794 (+)
XLOC_015359 NA coding upstream 24163 19614953 ~ 19616789 (+)
XLOC_015358 NA coding upstream 45758 19590044 ~ 19595194 (+)
XLOC_015357 pimr50 coding upstream 60710 19578079 ~ 19580242 (+)
XLOC_015363 NA coding downstream 10369 19659710 ~ 19679329 (+)
XLOC_015364 ptbp2b coding downstream 127805 19777146 ~ 19795593 (+)
XLOC_015365 plppr4a coding downstream 682104 20331445 ~ 20371803 (+)
XLOC_015366 palmda coding downstream 757058 20406399 ~ 20428140 (+)
XLOC_015367 si:ch211-153l6.6 coding downstream 781025 20430366 ~ 20443258 (+)
XLOC_015356 BX664750.6 non-coding upstream 65796 19575059 ~ 19575156 (+)
XLOC_015353 BX664750.4 non-coding upstream 121770 19519085 ~ 19519182 (+)
XLOC_015368 NA non-coding downstream 822809 20472150 ~ 20526830 (+)
XLOC_015371 AL954134.2 non-coding downstream 982880 20632221 ~ 20633527 (+)
XLOC_015372 rxrga non-coding downstream 1076343 20725684 ~ 20776841 (+)
XLOC_015384 dre-mir-26a-2 non-coding downstream 1726126 21375467 ~ 21375594 (+)

Expression


Co-expression Network