XLOC_015364 (ptbp2b)


Basic Information

Item Value
gene id XLOC_015364
gene name ptbp2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19777146 ~ 19795593 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030755
CGAGTAACAAACGCTCCACCATTTTGCATAGTTACGCGCGTGTTGAAGGCTCCCCTGCTCCTGTGATCAGTATCACACCGTGAAGAACGTTTTCCCTGCAATGGACGGCATTGCAAGTGATGTTGCAGTTGGTGTGAAGAGAAGCTCAGATGACTTGCTGTCTGGCAGTCTGTACAGTAGTCCAAATTCTTCAGTCACTGCTAATGGAAGTGACAGTAAAAAACTGAGGGTGGAGGACAGCATGGACAGCCCACCATCAAGAGTTATTCATATCCGTAAACTCCCCAATGAGGTTTCTGAGACTGAGGTCATCGCCCTGGGATTGCCCTTTGGAAAGGTCACAAATATACTAATGCTTAAAGGCAAAAATCAGGCATTTTTAGAGCTGGGAACCGAGGAAGCAGCTGTTACCATGGTGAACTACTACACAGCTGTTACACCTCAAGTGCGTAATGTCCCAGTGTTCATTCAGTACTCCAACCACAAAGAGCTCAAGACAGACAGTGCACTCAACCAGCGAGCTCAGGCCGTGCTGCAGGCGGTGTCAGCTGTCCAGGAGGGCGGCTCTCCAAGCTCGGACATGGCCAGCAAGAGTGTGTTAACGCCTGCCCCCAGCCCAGTACTGCGAATAATCATCGACAACATGTTCTACCCAGTCACCCTGGACGTCCTCCAACAGATCTTCTCCAAGTTTGGGACGGTCATGAAGATAATCACGTTTACCAAAAATAATCAGTTTCAGGCTCTTCTGCAGTTCAGTGACCCAGTAAATGCCCAGCAGGCCAAACTGTCCTTGGACGGCCAGAACATTTACAACTCTTGTTGCACTCTGCGCATTGACTTCTCCAAGCTGGTCAACCTGAATGTAAAATACAACAATGACAAAAGCCGGGATTATACCCGACCCGAGCTGCCAGCGGGAGATGGCCAACCACCAGTGGACCCGTCTATGGCCGCCGCTCTCAGCAAAGATTCCCCCTCCCTGCTTGGTACTCCCTCTGGAATGGTAACTTCCTACTCTAGTGGTGGAGGGTTTCCATCTTCTCTAGGGGCCATCAGCCCTCTGAGCGCAGCAGCggcggcagcagcagcagcagggagGGTAGCGTTGTCCGGTCATTCAGTACCTGGCGGAGTGCTACTGGTCAGCAATCTCAATGATGAGATGGTTACGCCCCAAAGTCTGTTTACCCTCTTCGGTGTCTACGGTGACGTGCAACGCGTGAAAATCCTTTACAATAAGAAGGACAGTGCTTTAATCCAGATGTCTGATGGAAACCAGGCCCAGTTGGCCATGAGCCATCTGAACGGGCAGAAGATGTATGGCAAGATCATTCGTGTGACCCTTTCGAAGCACCAGACGGTACAGCTACCCAGGGAAGGTTTAGATGATCAGGGCCTGACAAAGGACTTCACTAGTTCTCCACTGCACCGCTTCAAAAAGCCTGGCTCTAAAAACTTCCAGAACATCTTCCCCCCTTCAGCTACACTTCATCTCTCTAACATACCTGACAATGTGACAGAGGAGGATTTACGACTGCTCTTCTCAAACTCCGGCGGTACAGTGAAAGCGTTCAAGTTTTTCCAAGATCGCAAAATGTCTCTGCTGCAGATGGCCACGGCCGAGGAGGCAATTCAGGCCCTCATCGACCTTCACAACTATGACATGGGCCGCGGCCACCGTCTGAGAGTGTCCTTCTCAAAGTCCACCATCTGAGGACCCGCTGGTGCTCTCTTACCTTTCCTCTCTCTCCCCCAGGAGCCTCAAGTCCAGTTCAGTTTTATTTGTACCAGTCATTCCTTAACACCATATCAAAAACTTCAATGAGAATGGCCCTAAAGGAACACTCGCTCTCTATCTGCTCCTGCTATTTGTGTTTGGCCAGCTGTTATTCTGTTTTAGGATGGATTGACAAAAATGTGCCTTACTTAGCAAAATAGCGTCATCTTTTTTGCTCCCATTGACACAGGTTATAGTAGTTCAGTCACATTACACACAGTGTGTTATTTTTACAATCACCTGGCTTTGTTGTTTTGATGGTTTCTGAAAGTGATATTTAGCTTTTGCCCAATGTGTTTTCATTTGGTCTTTGATGAAAAAATTGATGAAGCTTTGAAAgctaggcgaccttttttttaACGTCTGTTGAATCTGAAGATAAGTAAGCAAATTTGATGGAGCGTACTCCATTTTGTAAATGATcttctgcatttttttattatttagggctGTAGTATTATTTCGTTTTCTTTGATCAGGCATCCGAGGTACTTTCTGTGATTGAAACCTGTGGTAAACAAAACACTGGCAGGGGGGAGCATCGTGTGTGACGTGTAGTACCTGCTTTGATATTTCTCACTTTTGCTTCAGTGAATTCTGTTTCCCGTTTTTTAGATGAAAATCCGAGCATGTGCTGATGGATCTCGGCAGTTGCATGTGTCAGATTGACCATGTTTGATGTTGTGAATTCACATTAATGTAGGGACTGTTGGGACCAAAGTAAATGTGCCTTTAGTCTTACTTTATTCTGCattgtacaaaatgttttattcaacCTCGGGAATATTTTTATCAACGGAGACTTTCCAACAGACATCACTCACGTGAAAGATCCATAATTGTCTTTGATTGTGGTTTTGATAGAGAATCGCTCGCTGATTCTATTGCAAAATTaccctttttcttcttttttgtggTTTAGACCTAAGAAACCAATGGGAGTGGGGGTGTTCTGTACATTTTTTACATGAATTGAGTTTTTACATCTTTAGGaatgtaatgttcagtatagAAGCGGCACAATTAAAAGTTCATTTTTCTACCAAGTTTGTGCTTGACGGTCCCTGTGTGGTGTAGTGCTTTTATCCTGTAGCATGCTGAATAAACTCTTCTCGCTCTG
>TCONS_00030756
CATGAAGATAATCACGTTTACCAAAAATAATCAGTTTCAGGCTCTTCTGCAGTTCAGTGACCCAGTAAATGCCCAGCAGGCCAAACTGTCCTTGGACGGCCAGAACATTTACAACTCTTGTTGCACTCTGCGCATTGACTTCTCCAAGCTGGTCAACCTGAATGTAAAATACAACAATGACAAAAGCCGGGATTATACCCGACCCGAGCTGCCAGCGGGAGATGGCCAACCACCAGTGGACCCGTCTATGGCCGCCGCTCTCAGCAAAGATTCCCCCTCCCTGCTTGGTACTCCCTCTGGAATGGTAACTTCCTACTCTAGTGGTGGAGGGTTTCCATCTTCTCTAGGGGCCATCAGCCCTCTGAGCGCAGCAGCggcggcagcagcagcagcagggagGGTAGCGTTGTCCGGTCATTCAGTACCTGGCGGAGTGCTACTGGTCAGCAATCTCAATGATGAGGTGTCTACGGTGACGTGCAACGCGTGAAAATCCTTTACAATAAGAAGGACAGTGCTTTAATCCAGATGTCTGATGGAAACCAGGCCCAGTTGGCCATGAGCCATCTGAACGGGCAGAAGATGTATGGCAAGATCATTCGTGTGACCCTTTCGAAGCACCAGACGGTACAGCTACCCAGGGAAGGTTTAGATGATCAGGGCCTGACAAAGGACTTCACTAGTTCTCCACTGCACCGCTTCAAAAAGCCTGGCTCTAAAAACTTCCAGAACATCTTCCCCCCTTCAGCTACACTTCAT
>TCONS_00030757
GGCCGCCGCTCTCAGCAAAGATTCCCCCTCCCTGCTTGGGGCCATCAGCCCTCTGAGCGCAGCAGCggcggcagcagcagcagcagggagGGTAGCGTTGTCCGGTCATTCAGTACCTGGCGGAGTGCTACTGGTCAGCAATCTCAATGATGAGATGGTTACGCCCCAAAGTCTGTTTACCCTCTTCGGTGTCTACGGTGACGTGCAACGCGTGAAAATCCTTTACAATAAGAAGGACAGTGCTTTAATCCAGATGTCTGATGGAAACCAGGCCCAGTTGG
>TCONS_00030758
ACAAATGTTCCTCCTCGGACCGACTTGCCCCAATTAACTGCCTTGACCCATGCTCCATGACCACCTCACCATTCTACGGGAAACCACCCTCCGTTATGGATGATCTGTTCATCTCCGCTCTACCTCGACTCTTCTCTCTTCCTGTCTTACGCTGCTTGCTCTTCTCTCCTTCTAAAGATGGTTACGCCCCAAAGTCTGTTTACCCTCTTCGGTGTCTACGGTGACGTGCAACGCGTGAAAATCCTTTACAATAAGAAGGACAGTGCTTTAATCCAGATGTCTGATGGAAACCAGGCCCAGTTGGCCATGAGCCATCTGAACGGGCAGAAGATGTATGGCAAGATCATTCGTGTGACCCTTTCGAAGCACCAGACGGTACAGCTACCCAGGGAAGGTTTAGATGATCAGGGCCTGACAAAGGACTTCACTAGTTCTCCACTGCACCGCTTCAAAAAGCCTGGCTCTAAAAACTTCCAGAACATCTTCCCCCCTTCAGCTACACTTCATCTCTCTAACAT

Function

symbol description
ptbp2b Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be active in nucleus. Is expressed in central nervous system; cranial ganglion; retinal ganglion cell layer; and retinal inner nuclear layer. Orthologous to human PTBP2 (polypyrimidine tract binding protein 2).

GO:

id name namespace
GO:0033119 negative regulation of RNA splicing biological_process
GO:0006397 mRNA processing biological_process
GO:0006417 regulation of translation biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060810-49 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be active in nucleus. Is expressed in central nervous system; cranial ganglion; retinal ganglion cell layer; and retinal inner nuclear layer. Orthologous to human PTBP2 (polypyrimidine tract binding protein 2).

Ensembl:

ensembl_id ENSDARG00000015901

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030755 False 2900 mRNA 0.46 15 19777146 19795593
TCONS_00030756 False 759 nonsense_mediated_decay 0.52 6 19784959 19793770
TCONS_00030757 False 281 mRNA 0.56 4 19785540 19791535
TCONS_00030758 True 518 processed_transcript 0.49 3 19790685 19793781

Neighbor

gene id symbol gene type direction distance location
XLOC_015363 NA coding upstream 97817 19659710 ~ 19679329 (+)
XLOC_015362 NA coding upstream 127805 19640952 ~ 19649341 (+)
XLOC_015361 pimr54 coding upstream 141492 19633493 ~ 19635654 (+)
XLOC_015360 BX088713.3 coding upstream 148352 19628697 ~ 19628794 (+)
XLOC_015359 NA coding upstream 160357 19614953 ~ 19616789 (+)
XLOC_015365 plppr4a coding downstream 535852 20331445 ~ 20371803 (+)
XLOC_015366 palmda coding downstream 610806 20406399 ~ 20428140 (+)
XLOC_015367 si:ch211-153l6.6 coding downstream 634773 20430366 ~ 20443258 (+)
XLOC_015368 NA coding downstream 676557 20472150 ~ 20526830 (+)
XLOC_015369 si:ch73-14h1.2 coding downstream 743809 20539402 ~ 20555743 (+)
XLOC_015358 NA non-coding upstream 181952 19590044 ~ 19595194 (+)
XLOC_015371 AL954134.2 non-coding downstream 836628 20632221 ~ 20633527 (+)
XLOC_015372 rxrga non-coding downstream 930091 20725684 ~ 20776841 (+)
XLOC_015384 dre-mir-26a-2 non-coding downstream 1579874 21375467 ~ 21375594 (+)
XLOC_015385 NA non-coding downstream 1636132 21431725 ~ 21436401 (+)

Expression


Co-expression Network