XLOC_015373 (prg4a)


Basic Information

Item Value
gene id XLOC_015373
gene name prg4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 20793982 ~ 20812059 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030774
ACAAAACAAGATTCAGACATTTCAACAGACATTTCTCTTTGTCAGATATACAGGTGTTTGTGTGATTGAGTGCCATTATGACTGGACTGACCGTGCTTTGGTCTCTTCTGGCTCTGCTCTGTACTGTCCTGCCGTCGTCTGCTGCTCAGGGCAGCTGTGTGGGCAGATGTGGAGAGCAGTTCAGCCGTGGACACATCTGCAACTGTGATTACAACTGTTTTGTTCATGGCGAGTGCTGCAAGGATTTTGAGGACATCTGCACCGCCAGTGAGTCCTGCAGAGGTCGCTGTGGTGAGCCGTTCCGCCGTGGCCGTCAGTGTGAGTGTGATTCTGGCTGTGTTCTCCACAACTCCTGCTGCCCAGACTACAGCACACACTGCGATGCTTTCTCCCATTTGCAAGCTCCAAGAAGCTCCAAACCAAACAAACcagcagATTATACTGAGGAGTGTATTGCAGCATGTCTTGCAGCTCAGCAAAACCCAGATGTGATGAGATATGgGAGTGGACTGAATAATTTGATGACTCCATCTGCCTCTCCGTTCCTTGCTGGTGATGTGTCTCAGGACGGCCCCTATACTCCTCTGTCCGCCTCTGACATCCCTGGTTTGTCTTCCAGTCCTTCTGAATTTCATCTGGCAGAATCGGATGCTGCTGCTCCCCTCCAGCCAGCAGGGGCTTCCTCTGAGAATCCACAAGCTGTACCGGTGCAGGTGTCTCTCTCCATCAGCGGGCAAGCAGACAGGCCATCCAGCAGTTCAGGCAGACCCAGCATTCCTGCAGACATCGCTCAGGCTCCAGCGGACAGCAGCCCTGCTGGACCAGGGCTCAATCTCTGCAGTGGAGTTGTCATTGATGGAATGGCTGCTCTTTTCAACGGCTCCATTATTGTTTTCAGAGGTCACTTTTTCTGGCTGCTGAACCCCAAGACCAGAAGGGCTGGTCCTGCTCGCAGAATCACTGAAGAACTAGGCGTCCCGTCACCCATTGACACGGCCTTCACACGCTGCAACTGCCAGGGCAAGACCTACATCATCAAGGGTGACAGTTACTGGAGTTTTGAGAATGGGGTTTTGGAGTCTGGATATCCAAGATCTGTGTCGCAAGATTTCGGTGGGCTCAGCGGTGACATCACTGCTGCTCTCCCAGTCCCAGCCACCAGAAAGAGGCCCGAATCGGTCTACTTCTTCAAGAAAGGGGGTAAAGTTCAGAAACTCTCTTTTCCTCCTGGAAGTGGACCAAATTGCAGTGGGAAGAGGTCTAAAAATGCTGACAAGCCCTCCAAAAATGGCAAACAAGCAGAAATCCAGCTATCAGGGGAGATCAACATCAAGCTGAAAATGAAGGGTTTTCCCAGTGCTGTGTCATCAGCAGTGTCCATGCCCAACCCCAGGAAGTCTGATGGCTTCGATTACCTTGTTTTCTCCTGGCCTAAAGTCTTGAACGTCAAGATTAGCGGTGATCTGCCTGCTTTGACTGCTCCTGCCAGCCactcgtcacagcagaatgacaTCACCAAGTGGCTCCACTGCGCCTAAAACTCCAGCGATAAACAAACCGCGCCAGCAGCTGCTCTGCGAGAATGATTCTccatttattagcaaaacatagCATCAGGATGATTActcacaaaatataaaataacaaatctAAAGCAATGATTTCAAGCACACTGAAACCaaacattaaacataaaacagcAGTGAGCTGATGGTTTTGAAGAGTCACGGATGTGAGCTCAGTGTTTCTGCCGGGCAGACGCTGGAAATGCAGCTGGATTTAGAAAGGGGAGCCTCTGCTGAGCCCTCGACCCCGACCTCCACGAGGAAAACCTACAAGAAAAAATTAAAaccaagatatttttttttccacaagttTTCTCCAAAACAAATCTGAAAGCTTCTGTATGCATTTACAATATTCTCTGCTTCATTAAAACTCAGAAAAGCTTTCAAA
>TCONS_00030775
AAAGACAGGCTTCAAGGTTTAGTGACGATGTTGTCTCTGTCAGTCAGATATACAGGTGTTTGTGTGATTGAGTGCCATTATGACTGGACTGACCGTGCTTTGGTCTCTTCTGGCTCTGCTCTGTACTGTCCTGCCGTCGTCTGCTGCTCAGGGCAGCTGTGTGGGCAGATGTGGAGAGCAGTTCAGCCGTGGACACATCTGCAACTGTGATTACAACTGTTTTGTTCATGGCGAGTGCTGCAAGGATTTTGAGGACATCTGCACCGCCAGTGAGTCCTGCAGAGGTCGCTGTGGTGAGCCGTTCCGCCGTGGCCGTCAGTGTGAGTGTGATTCTGGCTGTGTTCTCCACAACTCCTGCTGCCCAGACTACAGCACACACTGCGATGCTTTCTCCCATTTGCAAGCTCCAAGAAGCTCCAAACCAAACAAACcagcagATTATACTGAGGAGTGTATTGCAGCATGTC
>TCONS_00030776
gGAGTGGACTGAATAATTTGATGACTCCATCTGCCTCTCCGTTCCTTGCTGGTGATGTGTCTCAGGACGGCCCCTATACTCCTCTGTCCGCCTCTGACATCCCTGAATCGGATGCTGCTGCTCCCCTCCAGCCAGCAGGGGCTTCCTCTGAGAATCCACAAGCTGTACCGGTGCAGGTGTCTCTCTCCATCAGCGGGCAAGCAGACAGGCCATCCAGCAGTTCAGGCAGACCCAGCATTCCTGCAGACATCGCTCAGGCTCCAGCGGACAGCAGCCCTGCTGGACCAGGGCTCAATCTCTGCAGTGGAGTTGTCATTGATGGAATGGCTGCTCTTTTCAACGGCTCCATTATTGTTTTCAGAGGTCACTTTTTCTGGCTGCTGAACCCCAAGACCAGAAGGGCTGGTCCTGCTCGCAGAATCACTGAAGAACTAGGCGTCCCGTCACCCATTGACACGGCCTTCACACGCTGCAACTGCCAGGGCAAGACCTACATCATCAAGGGTGACAGTTACTGGAGTTTTGAGAATGGGGTTTTGGAGTCTGGATATCCAAGATCTGTGTCGCAAGATTTCGGTGGGCTCAGCGGTGACATCACTGCTGCTCTCCCAGTCCCAGCCACCAGAAAGAGGCCCGAATCGGTCTACTTCTTCAAGAAAGGGGGTAAAGTTCAGAAACTCTCTTTTCCTCCTGGAAGTGGACCAAATTGCAGTGGGAAGAGGTCTAAAAATGCTGACAAGCCCTCCAAAAATGGCAAACAAGCAGAAATCCAGCTATCAGGGGAGATCAACATCAAGCTGAAAATGAAGGGTTTTCCCAGTGCTGTGTCATCAGCAGTGTCCATGCCCAACCCCAGGAAGTCTGATGGCTTCGATTACCTTGTTTTCTCCTGGC

Function

symbol description
prg4a Predicted to enable polysaccharide binding activity and scavenger receptor activity. Predicted to act upstream of or within immune response. Predicted to be located in extracellular region. Is expressed in caudal fin. Human ortholog(s) of this gene implicated in camptodactyly-arthropathy-coxa vara-pericarditis syndrome and pericarditis. Orthologous to human PRG4 (proteoglycan 4).

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005575 cellular_component cellular_component
GO:0030247 polysaccharide binding molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8295 Predicted to enable polysaccharide binding activity and scavenger receptor activity. Predicted to act upstream of or within immune response. Predicted to be located in extracellular region. Is expressed in caudal fin. Human ortholog(s) of this gene implicated in camptodactyly-arthropathy-coxa vara-pericarditis syndrome and pericarditis. Orthologous to human PRG4 (proteoglycan 4).

Ensembl:

ensembl_id ENSDARG00000010482

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030774 False 1956 mRNA 0.49 14 20793982 20812059
TCONS_00030775 False 467 mRNA 0.52 5 20795242 20801305
TCONS_00030776 True 894 mRNA 0.53 7 20802876 20811176

Neighbor

gene id symbol gene type direction distance location
XLOC_015372 rxrga coding upstream 17141 20725684 ~ 20776841 (+)
XLOC_015371 AL954134.2 coding upstream 160455 20632221 ~ 20633527 (+)
XLOC_015370 olfml2bb coding upstream 178343 20604775 ~ 20615639 (+)
XLOC_015369 si:ch73-14h1.2 coding upstream 238239 20539402 ~ 20555743 (+)
XLOC_015368 NA coding upstream 267152 20472150 ~ 20526830 (+)
XLOC_015374 odr4 coding downstream 54839 20866898 ~ 20879820 (+)
XLOC_015375 pla2g4aa coding downstream 113840 20925899 ~ 20957362 (+)
XLOC_015376 arpc5a coding downstream 155614 20967673 ~ 20975677 (+)
XLOC_015377 rreb1b coding downstream 188275 21000334 ~ 21062305 (+)
XLOC_015378 riok1 coding downstream 251601 21063660 ~ 21076570 (+)
XLOC_015363 NA non-coding upstream 1114653 19659710 ~ 19679329 (+)
XLOC_015362 NA non-coding upstream 1144641 19640952 ~ 19649341 (+)
XLOC_015384 dre-mir-26a-2 non-coding downstream 563408 21375467 ~ 21375594 (+)
XLOC_015385 NA non-coding downstream 619666 21431725 ~ 21436401 (+)
XLOC_015388 NA non-coding downstream 721979 21534038 ~ 21537272 (+)
XLOC_015392 CT956055.1 non-coding downstream 1070822 21882881 ~ 21971409 (+)
XLOC_015407 NA non-coding downstream 2099133 22911192 ~ 22916384 (+)

Expression


Co-expression Network