XLOC_015378 (riok1)


Basic Information

Item Value
gene id XLOC_015378
gene name riok1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 21063660 ~ 21076570 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030785
TCCTTACCCACGTTCCCGGAAGTGAGCGCGCGCTCGTGTGCCTGGGCGCTGTTGCTGTTATAAGCGTTTATTTACAGTAGTCAGTCAGTTCGCTTTCGTTTACTTTTCGTTTAATTACATTTTACCGTTACAGATTAAATACAACTTTCTTACAGCACCGCGATGTATCAGGTCGTCCCAGGGCAGTTTGACGACGCCGATGAAAGCGAGTCAGTAATCAGCCCTGAAAAGCCCTCTCTGGAGAACCGATTTGATGAAGTTACTTTACAGTCGGTTGAAAATAACAAGCAAAAAGAATATGAGGAAGACTATGATGAAGACGAGgaggatgatgacgatgatgatgatgaatgggACTGGAATGAGTCAGCTGGAGGAGACTTTACTAAGCGCTACACTGCAATGAGGACTGGGTGTAACCCACAGGCTAATCGTCAAAACTCTAATAATAAGTCCATAAAAATGTCTACTCCGTCAGACAAGGTCCTGaggaaatttgaaaacaaaataaaccttGATAAACTGAGCTATGCAGATTCTGTAATCAATAAAGTCACTGTGATGCAAAAGCAGAGGGAAGCAGACACGTTTCGAGTAAAGGATAAATCAGACAGAGCTACCGTTGAGCAGGTTTTGGACCCCCGGACACGTATGATTCTGTTCAAAATGCTTAGCAGAGGCGTCTTTTCACAGATCAATGGCTGTATCAGCACTGGCAAAGAGGCAAATGTCTACCATGCAACCACTGCTAAAGGAGAAAGCAGAGCCATCAAAATATACAAAACCTCAATTCTACTATTTAAAGACCGAGATAAATACGTCAGCGGGGAATTTAGGTTCCGCCATGGGTATTGCAAAGGGAATCCTAGAAAAATGGTGCGCACTTGGGCTGAGAAGGAAATGAGAAACTTGATCAGACTACAGACTGCTCAGATTCCAAGTCCAGAGCCCATCATGTTGCGGAGCCACGTCCTCGTCATGAGCTTCATTGGTCGAGATGATACGCCTGCCCCTCTTCTGAAAAACGCTGTCCTGTCTGAATCCAAAGCTCGTGAACTCTACCTGCAGATCATCCAGAACATGAGAATAATGTACAGTGAAGCTCGTCTGGTCCATGCTGACCTCAGCGAATACAATGTGCTGTATCATAACGGAGAGGCCTATATTATTGACGTATCTCAGTCCGTTGAGCACGATCACCCTCATGCTTTGGAGTTTCTTCGGAAAGATTGCAGCAATGTTAATGaCTTTTTTCAAAGACACAATGTGGCTGTTATGACTGTACGTGAGCTGTTTGAGTTTGTCACAGATCCCTCCATCACAACTGACAACATTAACAAGTACCTGGACAAGGCGATGGAGATTGCGTCTGAAAGAACTGCAGAGGAAAGATCCGATCAGGATAAAGTTGATGAAGAGGTGTTTAAGAAGGCCTACATTCCCCGGACGCTAAATGAAGTCACTCATTATGAGAGAGACGTGGACACAATGATGAAGAAAAAGGAGGACACGTCTTCTGAAGACACAAACACTGACAATATCTTATATCAAACAGTAACTGGCCTCAGGAAGGACCTTTCTGGAGTGCAAACGGTTCCTTCAATACTGGAAGACTCCACAAAAGACGAGAGTTCAGGctctgaggaagaggaggatgaagacGACGAGGAGAAATCCGGAGAGGAGACTGAAGCGCAACCAGACAGAAAGgAACAAAAGAAGTTGGTTAAAGAAGCTCAGAgggagaaaagaaaaaataaagtgccAAAGCATGTCAAAAAGCGGAAGGAGAAGGTTGCAAAAACGAAGAAGGGGAGATGAAGATGCTTCAGTTTATGCTGTAGGTGATGGCAGCTTAGAATACTCAGAACTTTTGCTGCAATTGTAAATGTGTGAAGGTTTATGAAATGTTTATTAGGaagtattgtttttaataaacatacaCATTTCTCTGA
>TCONS_00030786
TCAAAACTCTAATAATAAGTCCATAAAAATGTCTACTCCGTCAGACAAGGTCCTGaggaaatttgaaaacaaaataaaccttGATAAACTGAGCTATGCAGATTCTGTAATCAATAAAGTCACTGTGATGCAAAAGCAGAGGGAAGCAGACACGTTTCGAGTAAAGGATAAATCAGACAGAGCTACCGTTGAGCAGGTTTTGGACCCCCGGACACGTATGATTCTGTTCAAAATGCTTAGCAGAGGCGTCTTTTCACAGATCAATGGCTGTATCAGCACTGGCAAAGAGACTACAGACTGCTCAGATTCCAAGTCCAGAGCCCATCATGTTGCGGAGCCACGTCCTCGTCATGAGCTTCATTGGTCGAGATGATACGCCTGCCCCTCTTCTGAAAAACGCTGTCCTGTCTGAATCCAAAGCTCGTGAACTCTACCTGCAGATCATCCAGAACATGAGAATAATGTACAGTGAAGCTCGTCTGGTCCATGCTGACCTCAGCGAATACAATGTGCTGTATCATAACGGAGAGGCCTATATTATTGACGTATCTCAGTCCGTTGAGCACGATCACCCTCATGCTTTGGAGTTTCTTCGGAAAGATTGCAGCAATGTTAATGaCTTTTTTCAAAGACACAATGTGGCTGTTATGACTGTACGTGAGCTGTTTGAGTTTGTCACAGATCCCTCCATCACAACTGACAACATTAACAAGTACCTGGACAAGGCGATGGAGATTGCGTCTGAAAGAACTGCAGAGGAAAGATCCGATCAGGATAAAGTTGATG

Function

symbol description
riok1 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to act upstream of or within phosphorylation and ribosome biogenesis. Predicted to be located in cytoplasm. Predicted to be part of preribosome, small subunit precursor. Predicted to be active in cytosol. Orthologous to human RIOK1 (RIO kinase 1).

GO:

id name namespace
GO:0030490 maturation of SSU-rRNA biological_process
GO:0016310 phosphorylation biological_process
GO:0030688 preribosome, small subunit precursor cellular_component
GO:0005829 cytosol cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko01001 Protein kinases
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040426-1927 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to act upstream of or within phosphorylation and ribosome biogenesis. Predicted to be located in cytoplasm. Predicted to be part of preribosome, small subunit precursor. Predicted to be active in cytosol. Orthologous to human RIOK1 (RIO kinase 1).

Ensembl:

ensembl_id ENSDARG00000016399

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030785 False 1955 mRNA 0.44 17 21063660 21076570
TCONS_00030786 True 786 nonsense_mediated_decay 0.44 9 21067734 21073795

Neighbor

gene id symbol gene type direction distance location
XLOC_015377 rreb1b coding upstream 1355 21000334 ~ 21062305 (+)
XLOC_015376 arpc5a coding upstream 87983 20967673 ~ 20975677 (+)
XLOC_015375 pla2g4aa coding upstream 106298 20925899 ~ 20957362 (+)
XLOC_015374 odr4 coding upstream 183840 20866898 ~ 20879820 (+)
XLOC_015373 prg4a coding upstream 251601 20793982 ~ 20812059 (+)
XLOC_015379 pip4k2ab coding downstream 13747 21090317 ~ 21156855 (+)
XLOC_015380 dnajc1 coding downstream 98428 21174998 ~ 21182561 (+)
XLOC_015381 si:dkey-29d8.3 coding downstream 109333 21185903 ~ 21300115 (+)
XLOC_015382 zbtb47a coding downstream 232702 21309272 ~ 21321749 (+)
XLOC_015383 ctdsplb coding downstream 279672 21356242 ~ 21381406 (+)
XLOC_015372 rxrga non-coding upstream 286819 20725684 ~ 20776841 (+)
XLOC_015371 AL954134.2 non-coding upstream 430133 20632221 ~ 20633527 (+)
XLOC_015368 NA non-coding upstream 536830 20472150 ~ 20526830 (+)
XLOC_015363 NA non-coding upstream 1384331 19659710 ~ 19679329 (+)
XLOC_015362 NA non-coding upstream 1414319 19640952 ~ 19649341 (+)
XLOC_015384 dre-mir-26a-2 non-coding downstream 298897 21375467 ~ 21375594 (+)
XLOC_015385 NA non-coding downstream 355155 21431725 ~ 21436401 (+)
XLOC_015388 NA non-coding downstream 457468 21534038 ~ 21537272 (+)
XLOC_015392 CT956055.1 non-coding downstream 806311 21882881 ~ 21971409 (+)
XLOC_015407 NA non-coding downstream 1834622 22911192 ~ 22916384 (+)

Expression


Co-expression Network