XLOC_015379 (pip4k2ab)


Basic Information

Item Value
gene id XLOC_015379
gene name pip4k2ab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 21090317 ~ 21156855 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030787
ATGGCCTCTGCAGCCAGCAGCCTCGCTGCATCCATCGCCAGCAAAACCAAAACcgagaagaaaaagaagaagcagCATTTCGTGTCTCAGAAGGTGAAGCTGTTTCGGGCCAGCGACCCGCTGCTCAGCGTCTTGATGTGGGGAGTGAACCACTCGATAAATGAACTCAGACACATCCAGATTCCTGTTATGCTGATGCCTGATGACTTCAAAGCCAACTCGAAGATTAAGGTGGACAACCACCTCTTCAACAAGTAAGAGACTGAATTAAGATGGGACTGCTGAGCTCAGAGTCTGTTTACTCCTGGTATGAAGATGGATTTTTGTTTATCGGTTCACAAGCATTTCAATCCATCTCTTTTGTACACTTTCGACCTCATTTCTGATATTGAATGGTCTATGAGTGGATGTTTGAGCTTGTTCTGATTTTTCATTCTAATATtggaaaaaataagtaaaaaaa
>TCONS_00030788
ATGGCCTCTGCAGCCAGCAGCCTCGCTGCATCCATCGCCAGCAAAACCAAAACcgagaagaaaaagaagaagcagCATTTCGTGTCTCAGAAGGTGAAGCTGTTTCGGGCCAGCGACCCGCTGCTCAGCGTCTTGATGTGGGGAGTGAACCACTCGATAAATGAACTCAGACACATCCAGATTCCTGTTATGCTGATGCCTGATGACTTCAAAGCCAACTCGAAGATTAAGGTGGACAACCACCTCTTCAACAAAGAGAACATGCCAAGCCATTTTAAGTTTAAGGAGTACTGTCCCCTAGTCTTCCGCAATCTGAGGGAGCGGTTCTCCATTGATGATCAGGAATATCAGAACTCTCTGACTCGCAGGGCCCCAATTCCCAGTGACGCTCAGGGCCGCAGTGGAGCTCGATTCCACACTTCACACAACAAGAGGTATGTCATCAAGATCATCACCAGCGAGGACGTGGCTGAGATGCACAACATCCTGAAGAAATACCACCAGTATATAGTGGAGTGCCATGGAAACACGCTGCTCCCTCAGTTTCTGGGCATGTACCGCCTCACAGTGGATGGAGATGAGACCTACATGATCGTCACTCGTAATGTTTTCAGCCACCGCCTGCCTGTTTACAAAAAATATGACTTAAAGGGATCTACAGTGGCAAGAGAAGCTAGTGACAAAGAAAAGCCACGTCCACCTGAAGAGGCTCCGTCCAAATCACGCATGAGCCAAAAGCTACAAACCATCCGGATCGCCACACGCTTTTACTGCGCCATAAGACACGTAAGGGCTCGACTGCAAAAGAACTGTGCCTATTGCTCTGTGTTCTTCTTCAACATGCATCACCCCACATTTTGCCTCAGGAAAGCAGCGTTCCCTCCGGATGCCTCAAGGGACTGTAAACTCAAGCACAGTTCCTTCTGTTCCAGAGATAAAATCTTGCCTGCTCCTTCAACGGTCTTGGCTGGAATTATGAAAACAACGGAAGACCAGTGTGTCGATGTTTAA
>TCONS_00030789
ATGGCCTCTGCAGCCAGCAGCCTCGCTGCATCCATCGCCAGCAAAACCAAAACcgagaagaaaaagaagaagcagCATTTCGTGTCTCAGAAGGTGAAGCTGTTTCGGGCCAGCGACCCGCTGCTCAGCGTCTTGATGTGGGGAGTGAACCACTCGATAAATGAACTCAGACACATCCAGATTCCTGTTATGCTGATGCCTGATGACTTCAAAGCCAACTCGAAGATTAAGGTGGACAACCACCTCTTCAACAAAGAGAACATGCCAAGCCATTTTAAGTTTAAGGAGTACTGTCCCCTAGTCTTCCGCAATCTGAGGGAGCGGTTCTCCATTGATGATCAGGAATATCAGAACTCTCTGACTCGCAGGGCCCCAATTCCCAGTGACGCTCAGGGCCGCAGTGGAGCTCGATTCCACACTTCACACAACAAGAGGTATGTCATCAAGATCATCACCAGCGAGGACGTGGCTGAGATGCACAACATCCTGAAGAAATACCACCAGTATATAGTGGAGTGCCATGGAAACACGCTGCTCCCTCAGTTTCTGGGCATGTACCGCCTCACAGTGGATGGAGATGAGACCTACATGATCGTCACTCGTAATGTTTTCAGCCACCGCCTGCCTGTTTACAAAAAATATGACTTAAAGGGATCTACAGTGGCAAGAGAAGCTAGTGACAAAGAAAAGACAAAGGAACTCCCGACTTACAAAGACAACGACTTCATCAACGATGGCCAGAAGATCTGCATAGATGATGAAAACAAGAAAATGTTTCTAGAGAAGCTGAAGAATGACGTTGAGTTCCTGGCGCAGCTGAAGCTGATGGACTACAGCCTGCTGGTGGGCATTCATGATGTGGAGCGAGGAGAGCAGGAGCAGCCAGAGGAGGAGAGCGAGGACAATGACGCGGGCGAGGAGGAGGGCACTGAGAGCGACGGAGGGGCCACCGGATCCCCGCCGGACAGTCCCAGTAACACACTGGACAGCAATAGGCCTCTGGGGCCAGGAGAGTTTGACCCCATCATCGACGTATATGCCATCAAGAGCCATGAAAATGCTCCTAAAAAAGAAATCTACTTCATGGCGGTGATTGACATTCTCACTCCATATGATGCCAAGAAGAAAGCAGCTCACGCAGCCAAAACTGTCAAACACGGGGCAGGGGCAGAGATCTCAACGGTCAACCCTGAGCAATACTCAAAGCGCTTTTATGATTTCATCACCACCATTCTGTCCTAACTGAGGCTGGAAGGAGACGGAGAAACAGGTGGTCACACATATGAGCTCATATCCTGGGAAAGGGTAACAGATccagtgtctctctctctctccccctctgtCACTGGATCACGTCTCAGATCCGTCGAgatcttttttttgtttacattttcttttttctcctcCGTTCGATTCGTTCGGTAGGTTTCTGGCTCCGTGTGGTTGAAAAGGCATACATGTGATATAGTCATGCATATATAGCGTTCTGTACCTTCGTTGTTAGATATCGTTGATTGAGAATATGAGTGATGTTGTTCGTGACCAGCTACGTGGTATGATTCTCATACTGGAATTCTCAAAGCtgcttaaatatttattattattcttatgttTTCTGCAGAGTTGTTATTGATAAAAATGTCCACTTTTGAATAATACgtttaaaaatatatctatatatgtttTTGGATTTATGAAGTAAATTTAGCCCTGAACAAATATGAACACAGTCAGAGTAACATAAATTGGAGTGTTTATTGCACTATCGCTCTTTAGCTTCAGGCAGTACCTCAAATCAGATCCGTCTGTTTACAAAGCATATACTGGAGGTCAGATGTTTggaagaattatttttatttattcaatacttTCAAGGTTTCATCTAAAGTACTGAAAAAGTTATATTGCGAACTATTTTTGGtgtcaatacattttaaaaatgtcatttattcatgtAAAGCAAAGATCGCTTCAGACCTTAGTGTCATATGATTGTTCAGAAATCATTCTTAAATTCTTATTTGCTGCTTAATTAACTATTATATTTGtacctaatattaatatttaaaatagctgaTTAATTGTTAATTGTGTCACTGCTCAGTTTTGATTTTTGAGTTGTTTGATTTAAGTATGGAAAAATAATTTTACACAGGGTGACCGcaaggtcttaaaaagttttagaGTGTCTTAAGCCCTGATCAGATACCAAGATTTTGTCATGATTTCCTTGACGTAGGGTATCGAGGGGAG
>TCONS_00030790
AGAGAACATGCCAAGCCATTTTAAGTTTAAGGAGTACTGTCCCCTAGTCTTCCGCAATCTGAGGGAGCGGTTCTCCATTGATGATCAGGAATATCAGAACTCTCTGACTCGCAGGGCCCCAATTCCCAGTGACGCTCAGGGCCGCAGTGGAGCTCGATTCCACACTTCACACAACAAGAGGTATGTCATCAAGATCATCACCAGCGAGGACGTGGCTGAGATGCACAACATCCTGAAGAAATACCACCAGTATATAGTGGAGTGCCATGGAAACACGCTGCTCCCTCAGTTTCTGGGCATGTACCGCCTCACAGTGGATGGAGATGAGACCTACATGATCGTCACTCGTAATGTTTTCAGCCACCGCCTGCCTGTTTACAAAAAATATGACTTAAAGGGATCTACAGTGGCAAGAGAAGCTAGTGACAAAGAAAAGCCACGTCCACCTGAAGAGGCTCCGTCCAAATCACGCATGAGCCAAAAGCTACAAACCATCCGGATCGCCACACGCTTTTACTGCGCCATAAGACAC

Function

symbol description
pip4k2ab Predicted to enable ATP binding activity and phosphatidylinositol phosphate kinase activity. Predicted to act upstream of or within phosphatidylinositol metabolic process and phosphorylation. Orthologous to human PIP4K2A (phosphatidylinositol-5-phosphate 4-kinase type 2 alpha).

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0051186 obsolete cofactor metabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0046488 phosphatidylinositol metabolic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0016307 phosphatidylinositol phosphate kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-272 Predicted to enable ATP binding activity and phosphatidylinositol phosphate kinase activity. Predicted to act upstream of or within phosphatidylinositol metabolic process and phosphorylation. Orthologous to human PIP4K2A (phosphatidylinositol-5-phosphate 4-kinase type 2 alpha).

Ensembl:

ensembl_id ENSDARG00000063544

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030787 False 463 lncRNA 0.43 2 21090317 21124019
TCONS_00030788 False 1011 mRNA 0.49 7 21090317 21143279
TCONS_00030789 False 2253 mRNA 0.43 10 21090317 21156855
TCONS_00030790 True 532 mRNA 0.50 5 21128391 21143054

Neighbor

gene id symbol gene type direction distance location
XLOC_015378 riok1 coding upstream 13747 21063660 ~ 21076570 (+)
XLOC_015377 rreb1b coding upstream 28012 21000334 ~ 21062305 (+)
XLOC_015376 arpc5a coding upstream 114640 20967673 ~ 20975677 (+)
XLOC_015375 pla2g4aa coding upstream 132955 20925899 ~ 20957362 (+)
XLOC_015374 odr4 coding upstream 210497 20866898 ~ 20879820 (+)
XLOC_015380 dnajc1 coding downstream 18143 21174998 ~ 21182561 (+)
XLOC_015381 si:dkey-29d8.3 coding downstream 29048 21185903 ~ 21300115 (+)
XLOC_015382 zbtb47a coding downstream 152417 21309272 ~ 21321749 (+)
XLOC_015383 ctdsplb coding downstream 199387 21356242 ~ 21381406 (+)
XLOC_015384 dre-mir-26a-2 coding downstream 218612 21375467 ~ 21375594 (+)
XLOC_015372 rxrga non-coding upstream 313476 20725684 ~ 20776841 (+)
XLOC_015371 AL954134.2 non-coding upstream 456790 20632221 ~ 20633527 (+)
XLOC_015368 NA non-coding upstream 563487 20472150 ~ 20526830 (+)
XLOC_015363 NA non-coding upstream 1410988 19659710 ~ 19679329 (+)
XLOC_015362 NA non-coding upstream 1440976 19640952 ~ 19649341 (+)
XLOC_015385 NA non-coding downstream 274870 21431725 ~ 21436401 (+)
XLOC_015388 NA non-coding downstream 377183 21534038 ~ 21537272 (+)
XLOC_015392 CT956055.1 non-coding downstream 726026 21882881 ~ 21971409 (+)
XLOC_015407 NA non-coding downstream 1754337 22911192 ~ 22916384 (+)

Expression


Co-expression Network