Fish Transcriptome and Expression Database

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model fish

XLOC_015384 (dre-mir-26a-2)

Basic Information

Item	Value
gene id	XLOC_015384
gene name	dre-mir-26a-2
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007113.7
NCBI id	CM002886.2
chromosome length	59640629
location	21375467 ~ 21375594 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030805
GTGTGGACTTGAGTGCTGGAAGTGGTTGTTCCCTTGTTCAAGTAATCCAGGATAGGCTGTCTGTCCTGGAGGCCTATTCATGATTACTTGCACTAGGTGGCAGCCGTTGCCCTTCATGGAACTCATGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000086601

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00030805	True	128	miRNA	0.51	1	21375467	21375594

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_015382	zbtb47a	coding	upstream	53718	21309272 ~ 21321749 (+)
XLOC_015381	si:dkey-29d8.3	coding	upstream	75352	21185903 ~ 21300115 (+)
XLOC_015380	dnajc1	coding	upstream	192906	21174998 ~ 21182561 (+)
XLOC_015379	pip4k2ab	coding	upstream	218612	21090317 ~ 21156855 (+)
XLOC_015378	riok1	coding	upstream	298897	21063660 ~ 21076570 (+)
XLOC_015385	NA	coding	downstream	56131	21431725 ~ 21436401 (+)
XLOC_015386	afg3l2	coding	downstream	77228	21452822 ~ 21469898 (+)
XLOC_015387	inhbab	coding	downstream	109898	21485492 ~ 21504467 (+)
XLOC_015388	NA	coding	downstream	158444	21534038 ~ 21537272 (+)
XLOC_015389	mplkip	coding	downstream	229953	21605547 ~ 21607784 (+)
XLOC_015372	rxrga	non-coding	upstream	598626	20725684 ~ 20776841 (+)
XLOC_015371	AL954134.2	non-coding	upstream	741940	20632221 ~ 20633527 (+)
XLOC_015368	NA	non-coding	upstream	848637	20472150 ~ 20526830 (+)
XLOC_015363	NA	non-coding	upstream	1696138	19659710 ~ 19679329 (+)
XLOC_015362	NA	non-coding	upstream	1726126	19640952 ~ 19649341 (+)
XLOC_015392	CT956055.1	non-coding	downstream	507287	21882881 ~ 21971409 (+)
XLOC_015407	NA	non-coding	downstream	1535598	22911192 ~ 22916384 (+)
XLOC_015408	NA	non-coding	downstream	1609536	22985130 ~ 22992029 (+)

Expression

Co-expression Network