XLOC_015388


Basic Information

Item Value
gene id XLOC_015388
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 21534038 ~ 21537272 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033517
GTTTTTTCTGCGCTTCTGGTAAATGATGATGAATCAGATTAAATATCCTAACTGAAAATGAAATCTGGTGGCAGCACACGCATGAGGAGCTATTCGacgattttattttataacaagcTCCAGCACGGGCTACTGCAGCTTCTTCCCTCATCATAAACCACAAAGATGCTACGTCAGTAACTTCCTCTTCCTTTCATTCCCAATCAAATTCTAATTCACCATTGGACGGTGTTTAGCGGACAGTTCGATTCAGATTACAAAATTTTCAGCTTCGGGATTTGTGTCCTAAGCATCAGCACAGTGTGTACTGAGTCCTCCTAGGGAGAATCAGCGAGCCGGTTATGGACTTGTGTATGGTGGAGTGTCAGCTGGGCTCAGGATGCATCCTTCCTCTGATGAGACTGGAGATGCTGACTCACTCCTACAGCTATAGTGGGTGATTAAAGTGTAATGCCATGTGTGCCACCTCCACATactgcacatgcacacatacacacacagacacacacatacagcctgACTGGTCATGCAACAGAAACAAATCTCAAACTCACAACTGCACATGTACAAAGCAAAGTAGTCATGCTGTTTTGTCAGGGTTTGTCAGAGTGTGTGCAACGCAAGATCAAACCGCAGCTGTAACTTTCCTGAAGGCCACACTTCTCTTCACGGCCTGCGATTGGCTGTAGCTGGTGCGGTAATGAAGAAGCCAATCATCAGCTTTCTCTGGAAGAAATGTCTGGGAATGGTTTGTTCAAAGGGTCGACATTGTTTGCAGCCGGATCAGTGATGGTGACACAGCCAATCACGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033517 True 811 lncRNA 0.46 4 21534038 21537272

Neighbor

gene id symbol gene type direction distance location
XLOC_015387 inhbab coding upstream 29571 21485492 ~ 21504467 (+)
XLOC_015386 afg3l2 coding upstream 64140 21452822 ~ 21469898 (+)
XLOC_015385 NA coding upstream 97637 21431725 ~ 21436401 (+)
XLOC_015383 ctdsplb coding upstream 152632 21356242 ~ 21381406 (+)
XLOC_015384 dre-mir-26a-2 coding upstream 158444 21375467 ~ 21375594 (+)
XLOC_015389 mplkip coding downstream 68275 21605547 ~ 21607784 (+)
XLOC_015390 fbxl7 coding downstream 96856 21634128 ~ 21734733 (+)
XLOC_015391 ca8 coding downstream 317764 21855036 ~ 21878527 (+)
XLOC_015392 CT956055.1 coding downstream 345609 21882881 ~ 21971409 (+)
XLOC_015393 tox coding downstream 445639 21982911 ~ 22108108 (+)
XLOC_015372 rxrga non-coding upstream 757197 20725684 ~ 20776841 (+)
XLOC_015371 AL954134.2 non-coding upstream 900511 20632221 ~ 20633527 (+)
XLOC_015368 NA non-coding upstream 1007208 20472150 ~ 20526830 (+)
XLOC_015407 NA non-coding downstream 1373920 22911192 ~ 22916384 (+)
XLOC_015408 NA non-coding downstream 1447858 22985130 ~ 22992029 (+)
XLOC_015410 NA non-coding downstream 1488049 23025321 ~ 23026978 (+)
XLOC_015414 NA non-coding downstream 1618740 23156012 ~ 23184804 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) mplkip NA misc NC_035913.1 CM008316.1 20540129 ~ 20613367 (-)