XLOC_015395 (zgc:56628)


Basic Information

Item Value
gene id XLOC_015395
gene name zgc:56628
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 22409249 ~ 22415196 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030819
TGACGTCATTTTACGGATGTTTAAAGGAGATTGAAGCCTGGAACCAGGAGCGGTAAGCGGTTAACTTTCATTACGCAGAGCTTATGAGGACATGTCAACGAGATGCGGTCTGAGTGTAGgcaaattattttttcttctgtgtttATAACTTCTGCCAATTTGCCTGAAGACAAGATATACTCCGGGTGTCTGCTTTTATGTGGACTGTCAGACTGAAAGCGATAATAATTCGTAACTTTACTGTATTTATGACTCTGGAAGTGTGAAGCAGGTAAGTGCGCATGCGTGTGATAGCTATGAGACTAGAAGTGTGAACATGTTTACTTTAGCAAGATTGTTTGGTATCTGTCAAATAGTGCTTACATATATTTATTGTCTGTTCTACTGAATATACAATTTGTTTCTCTTAGTAACCATAAGTGAAACATATATTCAGTCAACATGTGCTTTGTTGTAGGTAGTGACCCATTTAATATGGTAAACAGTGCATGCAATACACAAGCAGCTCATGTCAGAATGGGGGCTCTGGCGTGGAAGCGGTGTGTTGGATGTGGATGCAAGATTTCGGACCGCTTCCTCCTGTTTGCTTTGGATGGGTACTGGCACTGCCACTGTCTCAAGTGCTCCTGCTGCCAAGCCCAGCTGGCTGAAATTGGCTCATCGTGTTTCACAAAGCGTGGCTTGATCCTCTGCAAAAGTGACTATTTAAGATTATTTGGCCACAGTGGTGCCTGCAGGGCCTGCGGTACCTCCATCCCAGCAAATGAAATGGTAATGCGTGCACAAGGCAATGTTTTCCATGTCAAGTGTTTTGTATGCTCCATCTGCCATAACCAGCTTGTACCTGGTGACCGCTTTCACTACGCAAATGGAAAACTGTACTGTGAGCGGGACAAATCTGCAGCTTCTGAACACTCGGATTCACTCAGGGAGCATGACATATCCCAACAAAAATCCTGAGATGCTCATTTTTTTTGAGATACTATTGGAGCACCTATCTTCGTATTCAAGACCTTATTTAACCCAGCAGTTGCTTTGTCAGCTACAGAGCATTATGTGAAGGTCTGATATCATTGAAATCCGACATATATGGTAATATCTGGCGGTTTAAATGAGGTTAACCATTGGAGCTGAAAAGCAATATCAGCGAGCATCCTTGCGTATCATAATCAATTATGAATCTGTTTTGCACAGACTGACCTTATGTTGTGGACCTGCAGTTTATGCGTGGTGTCTGTTAGTTTTAaaattgtgtacttttactttcaggcagcaaaaacacacacatgtatgtgtgacatgttttggtaatcttcttGGTCTGCAATTACAGTATAACTGCAGTTAACCAGAGTTTCCAGAGAGCTATTTGTATCCTTTAAAAGCAGCACATCAGatgatatttttgttgttgtatttatttcattaaagatAACAGGGTTTTAAGGTTGCTCTAAATATTTGAAGCGTGTTGTGTATGAAGAATTGTTTGctttattatcttttaaaaaggcaTTAGAAAGATATTTTACTGAAATAAACTTTTCAGTCATGCGTTGTCATACATTTGAAATGGTTTCTAAAATATTTACAGACTAAATTTATGGAGAATATCACCCTCTGTTGGCAGAGAGCAGTTCTGTTACTTTATTATCCACCCCTTAAGTATTATTCCCATCTTTTTCAAACATTAGAATTTGTCCTATTGAATTAATTTTTATTCTGTGCATAAAAAAGTATGGGATTCTTTTTAATCCCACTAGAATGACAGTCTgtgtaacaatatttatttagcaAACACTTGTTCGACATTTAAAACAAGAATTGTTTGATggcattaatattaaatatattttttatttcgattaaaatatatttatactttacccatttgtcagcaagaaaattttaataatataaaatgtacaaGAAAATTAAGTTGAGTATGATCACTTaatcttttgtatattttaataaatgcaggTCAGTAGTTaatcgttttattttatttatacagacGTAATCATATTTGTTGGTACCCTTCAATTTTGTCCAGGCCAGTCACATTAGTTtgcctttttattgttttagctGAAACGCATTGAAAGcaatatttgattttaaatagtttattttcagtcatttttgattaatcattactttttttcagtttcaagTTATTTTAGTAACCATTGTAGTTTTCTTTCTACAATGGAAGGGTGCCAACAcatgtttggggtcagtaaattttttaaaatgttttaaaataagcttctcctgctcaccaaggctgcatttatttaatcaatactACAGTAAACATTGTACAATTGTGACATAAAATGCACTATAAAATAGTAGtttattattctttcattttcttgtcggcttagtccctttaataatccggggtcgccacagcggaatgaaccgtcaacttatccagcaagttttttcgcagcggatgcccttccagccgcaacccatctctgggaaacatccgaacacacactcacacacacactcattcactacggacaatttagcttacctaattcacctgcaccgcatgtctttggactgtgggggaaaccagagaacccggaggaaacccacgcaaaggcagggagaacatgcaaactccacacagaaacgccaactgagccgaggttcgaaccagcgaccttcttgctgtgaggcgacagcactacctactgcgccatacGTGCTGGATAATTTTGCGGTttcttctgctgtggcgaccccggattaataaagggactaaggcgaaaagaaaatgaatgaactaattcattattattattcatggtaatagtaataaaagcaataatgactggagtaataatttcattgaaactacatacaatacgaaagcagttatttaagattttattaaaaatgtaacaatttttatatatttaataaatgttaataaacgtCGTCTTGATGAAAAGaatagttttctttaaaaaaaaaaacatgaaaaaaaagtatatggtataatagtgtatatatgtaatgttttttttcccatattttttcattttattttcacacaaaaaaaatatttggaacattaaattacatttgcatttaatatgtGCAAAATactttgtgtataaaaaaatatttttgtaattaacTTGATGCAGACATCAAAGAATAAATAAGCATTTCTTGAAAGATAGgagcagtttttaaataaaagcaataacaaTTAGCATGATAACTATGTATATAGACTAGACATTTAGAAAGAAAATAGGCAGCATGCTTTTATTAATGTTTGCTGAATGAATAATATGGATGCTTTTGTAGTGACTCACAGCAGATGAATGATTGATGAACCTCTTTTTCAAGCTTCTGCATGTTTGACGTGAGTTTTATTGATTGTCATTGagtgttattgatttatttatttaaggattTATCATTATATTAACTTGTTGGGTTTGGCTTATAAACCAAAATACAGGGGCTGAATGTTTTTGAATCAGAGATATTGTTATTAAAGGGTAAATaagaataacacacacacaataaatgatcgattttatgtaaatgtaatttatgtaaacatgaataaacattaaagaaaaaaaaacaaaaatctgacTCATATCTAATAATTGTAAATTAGTTAACATTAAATTATGATTAGGTCATTTggtttaaataattacaatttagaCTAAAACTACCAAATAAGTAGAAATTACATAAACACTAAAACTGAAAACAAGTTAGTATTATAAATAGTGccgggcaaagattaatcacatccaaattaa

Function

symbol description
zgc:56628 Predicted to enable metal ion binding activity. Is expressed in nervous system and otic vesicle. Orthologous to human LMO4 (LIM domain only 4).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1099 Predicted to enable metal ion binding activity. Is expressed in nervous system and otic vesicle. Orthologous to human LMO4 (LIM domain only 4).

Ensembl:

ensembl_id ENSDARG00000110020

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030819 True 3812 mRNA 0.34 3 22409249 22415196

Neighbor

gene id symbol gene type direction distance location
XLOC_015394 hs2st1a coding upstream 10459 22363824 ~ 22398790 (+)
XLOC_015393 tox coding upstream 301141 21982911 ~ 22108108 (+)
XLOC_015392 CT956055.1 coding upstream 437840 21882881 ~ 21971409 (+)
XLOC_015391 ca8 coding upstream 530722 21855036 ~ 21878527 (+)
XLOC_015390 fbxl7 coding upstream 674516 21634128 ~ 21734733 (+)
XLOC_015396 pkn2 coding downstream 1079 22416275 ~ 22477141 (+)
XLOC_015397 lrrc8da coding downstream 80078 22495274 ~ 22502251 (+)
XLOC_015398 hfm1 coding downstream 115989 22531185 ~ 22552063 (+)
XLOC_015399 sept2 coding downstream 176943 22592139 ~ 22615366 (+)
XLOC_015400 bokb coding downstream 225019 22640215 ~ 22650435 (+)
XLOC_015388 NA non-coding upstream 871977 21534038 ~ 21537272 (+)
XLOC_015385 NA non-coding upstream 972848 21431725 ~ 21436401 (+)
XLOC_015384 dre-mir-26a-2 non-coding upstream 1033655 21375467 ~ 21375594 (+)
XLOC_015372 rxrga non-coding upstream 1632408 20725684 ~ 20776841 (+)
XLOC_015407 NA non-coding downstream 495996 22911192 ~ 22916384 (+)
XLOC_015408 NA non-coding downstream 569934 22985130 ~ 22992029 (+)
XLOC_015410 NA non-coding downstream 610125 23025321 ~ 23026978 (+)
XLOC_015414 NA non-coding downstream 740816 23156012 ~ 23184804 (+)
XLOC_015416 BX548024.3 non-coding downstream 842581 23257777 ~ 23257897 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_06547877_06549227 NA coding CI01000004 null 6547390 ~ 6549227 (-)
eurasian perch (Perca fluviatilis) G189126 NA non-coding NC_053129.1 CM020926.1 33042927 ~ 33043225 (-)