XLOC_015398 (hfm1)


Basic Information

Item Value
gene id XLOC_015398
gene name hfm1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 22531185 ~ 22552063 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030824
GTGGCAAGTAGAAGTACTGACGGTAAAGTGAGCAGAAGATAAGCAGAAATAATGACAAAAGCACTCCTAGTCAGTTATTAGGGGAAAATAACGTCTATAGCACGGTATatcacatttaaatgttttatgttgagTCGTGGACACACATGTACATCAAGTTTGAACTGAGGAAACGTAACAGAGACCGTCGAAGTTTTTTAGGTTGTCAAAGACACCCACATTATGGTGGACTCAGAAGAAAGTGTATCATCACTGGATAACCTGTTTTATGACCGGCCAGTAATTCATAAAGTGAAACCCTTATGTCAAGGACAAGGCTCCTGGGTTTGGGATGCTCCACCATCATTATCACAAATACCTTCGACACAAGACATCCAGAGAGAGGCAGCACACGCTTCTTCATTTAGTTTCTCTCAGAGATCAAAGACATTTCTGCCTCCAGCACAAAAACCTATTCACAATCCCACTGAAGGTATCCAAGGTCAGACTGTGCAATCACATGAGCTGGAGGAGCCCGGTCTATGGAGCCATGAACCCTCTAGTACAGGAGAGCAGGCTGTTTTCAGAATGGGTTTTGCGGAAACAAGGCCTTTACCTACTGCCAGTGCTCCTCCCTTTAAGACTCGGCTGTTCCAAGCTTCCACAAGAAGGACTTCAGGAAATGGAGAAGACGGTATCTCAAATCAAACATTGTCAACAACAAATGACACTGCTTTCCAAAGTCAGGCTCCTAGGAGAACCAGCGGTCCGCAGGCTGCACATGCTGTTGCTGCATGTAGTCCCTTTATTGGTTTGGCCCAAACTGAGGAAAAATGTGATGTTCCCTCAAGCCATAGTCTTCATCTTGGTCTTAAACCTGCAGAATTTAAAGggTCTTCTGAAAAAGGAACACTTCGTTCAGTCTCTGAGATTCCTGCAAAATTCAGAAGTGTGTTTAAAGATTTCCCTTACTTCAATTATGTGCAGTCCCAGGCACTGGATGATGTTCTGTACTCCAATAAAAATTTTGTTGCCTGTGCTCCCACTGGCTCTGGAAAGACTGTGCTATTTGAGCTGGCCATTGTTCGACTGCTGATTGAGGCTTCAGAGCCTTGGCACAATGTCAGAGCAGTGTACATGGCACCAATTAAGGCTCTCTGCAGCCAACAATATGACAACTGGAAACAGAAGTTTGGACCTCTTGGACTTAAATGCAAGGAACTAACTGGAGACACAGAGATTGATGACTTTTTTGAAATCCAAGATGCTCATCTCATTTTTACAACTGCAGAAAAATGGGATAGCATGACTAGAAGATGGAAGGATAACTGTTTATTGACATCCATTCGTCTCTTCCTCGTTGATGAGGTACATGTGGTGAAAGACAAAACCCGTGGAGCCACTCTTGAGGTTGTGGTCAGCAGAATGAAAACCATGCACTTCTACCGCCAAGCTATTAATCCTGAATCAAAAGCATCTGTGAGATTTGTAGCTGTCTCAGCTACTATCCCTAATATTCAAGACGTATCTGAATGGCTTTCAGATGAGTCAGGGCCCGCCACGTGTCTGGAGATGGATGAAAGTCACAGACCAGTGAAACTGAGGAAAGTGGTGCTTGGCTTCCCTTGTGGAAGTAATCAAAATGAATTCAAGTTTGATCTATCTCTCAACTACAAACTTGCCAACATTATTCAGACCTACTCTGACCAAAAACCAACCCTTGTTTTTTGCTCCACAAGAAAAGGAGTTCAACAATCTGCTTCTGTGCTTGCCAAGGATGCCAGGTTTATCATGAGCATTGACCACAAACAAAGACTGGTGAAATATGCAAACTCTCTGCTTGATGCAAAACTCAGAGATCTATTTGTTTATGGCATTGGATATCATCACGCTGGCATGGATGTGTCCGACAGGAAGATCACCGAAAACGCATTTACAGTGGGTGACTTGCCAGTTTTATttacaacAAGTACTCTAGCCATGGGTGTGAATATGCCAGCCCACCTTGTGGTAATCAAATCCACAATGCACTATGTTGGTGGTGCATGTGAGGAGTACAGTGAAGCTGACCTGTTACAAATGATTGGAAGAGCTGGCAGACCACAGtttgacaCAACAGCAACTGCAGTAATCATGACACGGCCTCAGACAAAGGACAAATACATGCATTTCTTGAGTGGCTTAGACTGCATAGAGAGCAGtTTGCATACAAATCTGGTGGAGCACTTGAATGCAGAAATAGTTCTTCACACCATATCTGATGTGAACATGGCTCTGGACTGGATCCGCTCTACTTTCCTGTACATCCGTGCTTTGAAAAACCCCAAACACTATGAACTGTGCTTGAAGAACCTCAACTCTTTGGCCTCTTTCAACCTGATTACCATGGATGAAGACATTAACATCAAGCCCACAGAGACTGGAAAACTCATGGCTAGGTACTGTGTTGCCTTTGACACTGTGAAGCAGTTCAGCATGGTGACTGGCACAGAGACCTTACCTGAGCTGATTGAAATGATATCGAAAGCAAAAGAGTTCAGTGACATGCAATTAAGAGTAAATGAGAGAAAAACCTTGAACACATTGAATAAGGATAAAAACCGAACCACCATCAGgttTCCAATAGAAGGGAAGATCAAAAGCAACGACATGAAAGTGAATTGTCTGATACAAGCTCAGCTTGGCTGCATCCCCATTCAGGAGTTTGGACTCATACAGGATACTggaaaaatattcagaaatgcaGTTAGAGTTAGCAGATATCTGACTGAGTTTCTCTGTCATCACTCCAAATCGAACTTTGCAGCTCAACTCAACGCTTTAATTCTTGCCAAATGTTTTCGAGCCAAACTGTGGGAAAACTCACCCTACATTTCCAAACAGCTTGAGAGGATAGGATTATCACTTGCTACTGCGTTGGTGAATGCAGGCCTTACGACATTCAGCAAAATTGAGCAGACCAGTCCTAGAGAATTGGAGCTAATTGTCAACAGGCACCCTCCATTTGGAAACCAGATTAAGGAAGCCATCAGCAAACTTCCCAGATGTGAAGTTAGTTTGGAACAGATTCCACGATACAGTCCATCCACAGCTGAGATTGTTTTCACAGTCAACATGAATAACTTTAAGGAGTTGGCACTGAAGCGGACAGCGCCAGACCACCATTATGTCACTCTTATTGTTGGAGATTGTGACAATAAGGTGGTCTTCCAACAAAAAATCTCGGACACTTTGCTCTTGAAGTCTGGGAGCTGGTCAAAGAGAATTGAGGTGACAAGATCACCAAAGGGAGAGGAGCTCAGCATTCATTTGATAAGCTCTGAATATGTGGGTCTGGACATACAGCAGGACTACAGCGCCCACTACTCAGGAGTGCACGGTTTGCAAGCTGAGTTCTCCATTACAGAGAAACCAACATGGAGATTTCAGAGGATTCATGACACAATGAAGAAGAGACAAGGCCCCACAGTCGCAACTCCCAATTCTTCAGTCAACG
>TCONS_00030825
GTTGGTGAATGCAGGCCTTACGACATTCAGCAAAATTGAGCAGACCAGTCCTAGAGAATTGGAGCTAATTGTCAACAGGCACCCTCCATTTGGAAACCAGATTAAGGAAGCCATCAGCAAACTTCCCAGATGTGAAGTTAGTTTGGAACAGGTAGGATTTcatatttgttgtctttctaACTCATTCAAATTGAGAAACtacatgaaatatttatacttcaaAACAAATAATATCTCCACATAATACACGAAACTATTTTCACATATACATTAATATAGTAATTTTCACATGTACATTATAAGTTTTAATATGAATTCTTAATGGTGATAAGAcagcaatttcattcattcattcattttcttttcggcatagtccctttattaatctggggtcaccacagcggaatgaaccgtcaacttatccagcatatgttttacgcagcggatacccttccagctgcaacccatcactgggaaacacccatgcattctc

Function

symbol description
hfm1 Predicted to enable DNA helicase activity. Predicted to be involved in resolution of meiotic recombination intermediates. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in primary ovarian insufficiency 9. Orthologous to human HFM1 (helicase for meiosis 1).

GO:

id name namespace
GO:0006417 regulation of translation biological_process
GO:0000712 resolution of meiotic recombination intermediates biological_process
GO:0010494 cytoplasmic stress granule cellular_component
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-061207-43 Predicted to enable DNA helicase activity. Predicted to be involved in resolution of meiotic recombination intermediates. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in primary ovarian insufficiency 9. Orthologous to human HFM1 (helicase for meiosis 1).

Ensembl:

ensembl_id ENSDARG00000104288

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030824 False 3475 mRNA 0.44 29 22531185 22552063
TCONS_00030825 True 493 lncRNA 0.37 2 22547392 22547994

Neighbor

gene id symbol gene type direction distance location
XLOC_015397 lrrc8da coding upstream 28934 22495274 ~ 22502251 (+)
XLOC_015396 pkn2 coding upstream 54044 22416275 ~ 22477141 (+)
XLOC_015395 zgc:56628 coding upstream 115989 22409249 ~ 22415196 (+)
XLOC_015394 hs2st1a coding upstream 132395 22363824 ~ 22398790 (+)
XLOC_015393 tox coding upstream 423077 21982911 ~ 22108108 (+)
XLOC_015399 sept2 coding downstream 40076 22592139 ~ 22615366 (+)
XLOC_015400 bokb coding downstream 88152 22640215 ~ 22650435 (+)
XLOC_015401 zgc:161973 coding downstream 107724 22659787 ~ 22677019 (+)
XLOC_015402 kif1ab coding downstream 142319 22694382 ~ 22758590 (+)
XLOC_015403 espnlb coding downstream 213429 22765492 ~ 22792460 (+)
XLOC_015392 CT956055.1 non-coding upstream 559776 21882881 ~ 21971409 (+)
XLOC_015388 NA non-coding upstream 993913 21534038 ~ 21537272 (+)
XLOC_015385 NA non-coding upstream 1094784 21431725 ~ 21436401 (+)
XLOC_015384 dre-mir-26a-2 non-coding upstream 1155591 21375467 ~ 21375594 (+)
XLOC_015372 rxrga non-coding upstream 1754344 20725684 ~ 20776841 (+)
XLOC_015407 NA non-coding downstream 359129 22911192 ~ 22916384 (+)
XLOC_015408 NA non-coding downstream 433067 22985130 ~ 22992029 (+)
XLOC_015410 NA non-coding downstream 473258 23025321 ~ 23026978 (+)
XLOC_015414 NA non-coding downstream 603949 23156012 ~ 23184804 (+)
XLOC_015416 BX548024.3 non-coding downstream 705714 23257777 ~ 23257897 (+)

Expression


Co-expression Network