XLOC_015401 (zgc:161973)


Basic Information

Item Value
gene id XLOC_015401
gene name zgc:161973
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 22659787 ~ 22677019 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030830
atattcagcCTGTTATGTTGCCCTCTAGCGAAATTATCTTGTAAGGTCAAAGGCCAGCAGGTTAGCTCATTGTACTAATCATGGCTAAGCTTACTGGTCTTAGTGAGTTTCTCAGGACTATAAGACAAGGCCTTGATCAAACTGAACAAACCGCTCGAGCGGAGGCTCAGAATGGTGACTGTGTGCGAAAACGGAAGAGTCACGTGTCGAATCCTTTGCAAACTGAAACGAGCAAAACTGTGTTTGAAGAAAGCCCTAACAACTGGCAGGAAAATTATTTGGAGAGGTTGCCATCTGAGATCATCCTCAAGATTCTTTCCTCTCTGGATGCCTCCTCTCTGTTCAATATCAGCTTTGTCAACAAGCGGTTTCATGATCTGGCCAACAGCAATGCTCTGTGGTCTGTGTTGTATGCTTCCGAGATTGAGAAGAAGAAGTGGAGACCTCGAGTAAGTGTGGCAGAAGGCATGAGAAGCACACATGCGGAAGGGAAACCTTCAGGATACTGGAAGAAGATGCTGCTCAAGGAGATGGCAGGATACAAGGACACCATGTGGAAAACAGAGCTAAAACACAAGAACCCACACACCGGCATGCCAGCTCTCACTGAGGAAGTGCTCAGGAGATTACACATTCAGTGGGAAATCACACTTACGTTTAGGAATGGACGTGAAAGTGTctacaagcaaacacacactttCTTTGAGGATTCATCGGTTACTGTGTTTTGGAGTAATGGCTGCTGGCCATTGATGCACAATCTTGATAGCCTGAAGCTTCATGGAATCATGTGTCGACCTGTGGGAGCTCCTGGAGACAAGCCGAGGTGGCGCTCTCTGATCTGCAAGACAGCTACAGATAAATCTGTACACTGGGTGTTTCTTGGCTATGACAGGCTTGTGAAATTGCTGCAGTTTGGCAAAATCATCATCGGCGTCTGGCGGGGCAACTGGAGAATCGCGTTTATCATGATCAACCTGCACTTTCACAAACTGATTGAAAAGAGTCTTCTTGGGTCAAGATTTTGCCCCTACATACCAACAGAAGACAATGCTGTGGACCCTGACTGTGTTCGGCATGGATACACACTCCACATTGTGCTTCACAATCCAGTTCGCAGAATCATGTGTCAGCGTTTCTCCCCACTGTACACCAGCAGAGTGGGGTTGCAAGGAGAGTATGTGCAGCTAAACGCTGTTGATTTCTCTGATTCTTCCGAACACATGCCTGTGGTGAGGATCTGTCTACCATGGCAAGCAGAGGGACTGAAGGGAAATGTTGAGCGTTGCTGTATGATGACTCTGACAGTCCTGGATGAGGCTCAGCGCCCCTTCTGGTGTGTGAGTTCACCTGTGAGGATGTCCAGTAATCCGAGAGTGGTGGACGTGGAGTACGAAGGTGAGCAGTTCATCATCCTTTATGAGGACGCGGAGGGGAAGGTCAAAATGACCTTTGTGTGGATGGAGGAGTTCCAGCACTTCTTCTTGGTGCAGTTGTTTACTGTGTTCTCAGTAGCCAAAGTGAAAAAGCACTTTTGGGGGTGAATGACTTTGATTGTGCTTTGAGCTCGAAGAtcatttagaatatttttattttcctattttatttattttttgctctttgtTGATGGAGATATCTGAAATGTTTTGTTGTGGAGTTTCAAGGGCTTTAACGtttccaaatgaaaaaaaaaaaacagcaaatctCAAAGCACTTAATTTTTCATCAATTTAAAATTGGTAAATGTTGTTTACACACCTTTGTCATGTTGTTTCTCATTGTCAAGAATGAGAATACGTAGCACTGTTTACTATGCAAATAAACTTGCACTGTAGAACCAAAATGTTCAA
>TCONS_00033518
TTAGCTCATTGTACTAATCATGGCTAAGCTTACTGGTCTTAGTGAGTTTCTCAGGACTATAAGACAAGGCCTTGATCAAACTGAACAAACCGCTCGAGCGGAGGCTCAGAATGGTGACTGTGTGCGAAAACGGAAGAGTCACGTGTCGAATCCTTTGCAAACTGAAACGAGCAAAACTGTGTTTGAAGAAAGCCCTAACAACTGGCAGGAAAATTATTTGGAGAGGTTGCCATCTGAGATCATCCTCAAGATTCTTTCCTCTCTGGATGCCTCCTCTCTGTTCAATATCAGCTTTGTCAACAAGCGGTTTCATGATCTGGCCAACAGCAAAAGAAGAAGTGGAGACCTCGAGTAAGTGTGGCAGAAGGCATGAGAAGCACACATGCGGAAGGGAAACCTTCAGGATACTGGAAGAAGATGCTGCTCAAGGAGATGGCAGGATACAAGGACACCATGTGGAAAACAGAGCTAAAACACAAGAACCCACACACCGGCATGCCAGCTCTCACTGAGGAAGTGCTCAGGAGATTACACATTCAGTGGGAAATCACACTTACGTTTAGGAATGGACGTGAAAGTGTctacaagcaaacacacactttCTTTGAGGATTCATCGGTTACTGTGTTTTGGAGTAATGGCTGCTGGCC
>TCONS_00030831
TTAGCTCATTGTACTAATCATGGCTAAGCTTACTGGTCTTAGTGAGTTTCTCAGGACTATAAGACAAGGCCTTGATCAAACTGAACAAACCGCTCGAGCGGAGGCTCAGAATGGTGACTGTGTGCGAAAACGGAAGAGTCACGTGTCGAATCCTTTGCAAACTGAAACGAGCAAAACTGTGTTTGAAGAAAGCCCTAACAACTGGCAGGAAAATTATTTGGAGAGGTTGCCATCTGAGATCATCCTCAAGATTCTTTCCTCTCTGGATGCCTCCTCTCTGTTCAATATCAGCTTTGTCAACAAGCGGTTTCATGATCTGGCCAACAGCAAGTGAGTTTGTGAcagaaagtgtatgaatatggaataataaatattaacatggATGTCCAGTGCTCTGTGGTCTGTGTTGTATGCTTCCGAGATTGAGAAGAAGAAGTGGAGACCTCGAGTAAGTGTGGCAGAAGGCATGAGAAGCACACATGCGGAAGGGAAACCTTCAGGATACTGGAAGAAGATGCTGCTCAAGGAGATGGCAGGATACAAGGACACCATGTGGAAAACAGAGCTAAAACACAAGAACCCACACACCGGCATGCCAGCTCTCACTGAGGAAGTGCTCAGGAGATTACACATTCAGTGGGAAATCACACTTACGTTTAGGAATGGACGTGAAAGTGTctacaagcaaacacacactttCTTTGAGGATTCATCGGTTACTGTGTTTTGGAGTAATGGCTGCTGGCC
>TCONS_00030832
ACGGAAGAGTCACGTGTCGAATCCTTTGCAAACTGAAACGAGCAAAACTGTGTTTGAAGAAAGCCCTAACAACTGGCAGGAAAATTATTTGGAGAGGTTGCCATCTGAGATCATCCTCAAGATTCTTTCCTCTCTGGATGCCTCCTCTCTGTTCAATATCAGCTTTGTCAACAAGCGGTTTCATGATCTGGCCAACAGCAAAAGAAGAAGTGGAGACCTCGAGTAAGTGTGGCAGAAGGCATGAGAAGCACACATGCGGAAGGGAAACCTTCAGGATACTGGAAGAAGATGCTGCTCAAGGAGATGGCAGGATACAA

Function

symbol description
zgc:161973 Orthologous to human FBXO15 (F-box protein 15).

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-13 Orthologous to human FBXO15 (F-box protein 15).

Ensembl:

ensembl_id ENSDARG00000029848

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030830 False 1850 mRNA 0.45 10 22659787 22677019
TCONS_00033518 False 650 lncRNA 0.46 5 22659848 22669860
TCONS_00030831 False 747 lncRNA 0.45 4 22659848 22669860
TCONS_00030832 True 317 processed_transcript 0.46 3 22660071 22666700

Neighbor

gene id symbol gene type direction distance location
XLOC_015400 bokb coding upstream 9352 22640215 ~ 22650435 (+)
XLOC_015399 sept2 coding upstream 44421 22592139 ~ 22615366 (+)
XLOC_015398 hfm1 coding upstream 107724 22531185 ~ 22552063 (+)
XLOC_015397 lrrc8da coding upstream 157536 22495274 ~ 22502251 (+)
XLOC_015396 pkn2 coding upstream 182646 22416275 ~ 22477141 (+)
XLOC_015402 kif1ab coding downstream 17363 22694382 ~ 22758590 (+)
XLOC_015403 espnlb coding downstream 88473 22765492 ~ 22792460 (+)
XLOC_015404 rab6bb coding downstream 118475 22795494 ~ 22803665 (+)
XLOC_015405 aire coding downstream 131927 22808946 ~ 22846553 (+)
XLOC_015406 amotl2b coding downstream 174813 22851832 ~ 22861178 (+)
XLOC_015392 CT956055.1 non-coding upstream 688378 21882881 ~ 21971409 (+)
XLOC_015388 NA non-coding upstream 1122515 21534038 ~ 21537272 (+)
XLOC_015385 NA non-coding upstream 1223386 21431725 ~ 21436401 (+)
XLOC_015384 dre-mir-26a-2 non-coding upstream 1284193 21375467 ~ 21375594 (+)
XLOC_015372 rxrga non-coding upstream 1882946 20725684 ~ 20776841 (+)
XLOC_015407 NA non-coding downstream 234173 22911192 ~ 22916384 (+)
XLOC_015408 NA non-coding downstream 308111 22985130 ~ 22992029 (+)
XLOC_015410 NA non-coding downstream 348302 23025321 ~ 23026978 (+)
XLOC_015414 NA non-coding downstream 478993 23156012 ~ 23184804 (+)
XLOC_015416 BX548024.3 non-coding downstream 580758 23257777 ~ 23257897 (+)

Expression


Co-expression Network