XLOC_015404 (rab6bb)


Basic Information

Item Value
gene id XLOC_015404
gene name rab6bb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 22795494 ~ 22803665 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030836
GCTGCGCATGCGCACTGAGCCGGAGAATTGACATCGCGGAGCAGTACTGCAATATCCATCGATTCGCGACCGAAGATTATCCATCTGCATTCTCGCAAGACTGGTGCCACCTGTACATATTAATCCATAACAACTTTGTCATTAAAGCAATCATGTCCATGGGAAGTGACTTTGGGAACCCTTTACGGAAATTCAAACTTGTTTTTTTAGGGGAGCAAAGCGTTGGGAAGACATCGCTGATAACAAGGTTCATGTATGACAGTTTTGACAACACTTATCAGGCAACTATTGGCATTGACTTTTTATCAAAAACCATGTATCTGGAGGACCGAACTGTGAGGTTACAGCTATGGGACACTGCAGGGCAGGAGCGTTTTAGGAGTCTTATCCCGAGCTACATTAGAGACTCCACAGTGGCTGTGGTGGTGTATGATATCACAAATATCAATTCATTCCAGCTAACCTCTAAATGGATTGATGATGTCAGAACAGAGAGGGGAAGTGATGTCATTATCATGCTGGTGGGCAATAAAACAGATCTAGAGGAAAAGAGGCAAATCACTATAGAGGAGGGGGAGCAGCGGGCCAAAGAGTTGAATGTGATGTTTATCGAGACTAGTGCAAAGACCGGCAGTAATGTTAAACAGTTGTTTCGGCGAGTGGCCGCTGCTTTGCCTGGTATGGAGAGCTTGGATGATAATAACAAAGAAGGAATGATTGACATTAAGCTGGACAAACAGCCGGATCCTCCGGCCACTGAAAGCGGCTGCTCCTGTTAGTAGAAAGTGGTTTGGACCTTCATTAACACCACACGCTTGTTCTGTTGCTTCCTATGGGTCCACGTCCAGTTGAACTTTATGATCGGATATAGGCTTTTTACATCTCTCTGAATGGGTCTAAAATTATACTCCTCAGttgcaagaacaaaaaaaaagtcaacactGTCTGTTCAATTGCCAAAATAATATCATAAGTAAATCAAAGTGACTAGCTTACAGATTCATATAAGACGGGAAGTGGCATGTGTACCATCttcggccaaaaaaaaaaaaaaacattcagagtGAGTTATGGGTtgttatgttttgtatttttgtacattacaaaaaaaagcaCTAAATGAtgccttcacaaaaaaaaaaaaatatgtttaagatTTGAGGCGGACGGCAGAGTAACTGTCTTTCGTCTATAGCATGCATGTGAGACAACTTTTAGAATCTGTCATGTCCTTCTGGTCCAAACACATTAATAGTAATGAAACGAAGATCTCCGAATTAATGatgaaacaaaaaaactcaaaaaaaaaaaaaaaagagagaagtcTGTTTAAAGTCTTAGTGTGGGTCTGTGTATACAGTACATTCTACATGCTAATCCAGTACCGGCCTCCACCAGAGGTGTGTGTATTAACCCGGCTAACCTTTAAAGTGCCGCGGCACTGTTGCAAAGTACCAATGGATTTTCCTGCTAGCTTCATGTATACACTTAAGATCCGCCAGGCGGTACTGTATTGtatatagtatttatattattgtgaACATTCATCATTTAGTGGTGGTTTATGTTTACCTGTACAAACGTTTCTGtttccttcttcttcttttttcaatACGACAAGGGCTTCACTTTTATTTTCTCGATCTTACCTGTAGCCATACACTGGTAGTATTACTTTTGATTTGGGCATTTTGCTGTTGCCTTATACGGTTTTACTCATCCATTATCACTCCTGATAAAACCCTATAGACATGTGGGTTGatttaactatttttttcaagatattatttatttgcatccAGTTAGAATGAGATCATTCGTTTGAGGTGAGCCTTAGGAAACAACAGATTTTCATTTCAAATACATGCACTTTGTTCTGGGTTATGGCAAGGAAACGTTTGGTTCACCACATCCTGAAGTAAGGAAAGAGACAAATGATTGTCGTATCCACGTCATATATGCTATGTAGTGAAGCTCTCATAGTCTCCCGCACATGTCGAATGGATGTGTAGATTAAGATTGAAAACGTTAGCTGTAAGTGAACACTTTCATCTCAGAGAATCCACGAAGACCTTTTTATTAAAACAGCACTGAGCTGAGAGAATGTACCCGCCTGAAGTCCACTTCTGCTTTTATCGCAACAGTACGTTCAAGAAATGTGAGTTGTTTACAAACCTCTGGAGAAACATAGtatctttaatatttaaagttttctttgttgttttagaTTTGAATTGTTTACATAAATGCACTGATTAACACCACAGATTGTATAGAgattcatttaggaaatattaggtatttataatatatttaacgTTAGTGCGAGTTTCTTTCTGGTGCCAATAACTCTATTAATTCAAAGAAAACTGGACATGAGGAAAAACTGTGACTGAATTGTTTGGTGTTGGAAGAAAGCCGCTGATATTCATTGCGGGGAGGTTTTGCATTGATGGGGCACGAAGTATGTCATCTTTCACATTTCTCAAGCCTCTGTTTAGCCTTTGCTTTGTCATCTTTCACTTTTTGTACACTAGTTGTGCCTTCTGTTATTGTGGCATCACAATGCAAAGCTTTCATTGTATGGCTACCTTGAGAACACATACGTTACTGAGAGGTGGTCACAGACCGGTCGGCCAGACAGCTGACGGATTTATGATGTTGATTGGTGATTAAATAGTCGTGTTCACGCCATCTAGCCAGTTCACAGCAGTCTGAGTTGCAGAAGAGGAAGGTTGTGTGTGATAACAGGAAGTCGCCGCTGATTGCGGGATGGGATTGAATCTGTCAAAGTTGTTGCCGTAGGGTTGTGTAGAGCAGTGTAGTTGGCTCTTTATTCACTCTGTAAGGACATTTATGAGCATGACATctgtctgaaaaaaaatcaataaaattcaTGTCTTAATACCA
>TCONS_00030837
TCGCGACCGAAGATTATCCATCTGCATTCTCGCAAGACTGGTGCCACCTGTACATATTAATCCATAACAACTTTGTCATTAAAGCAATCATGTCCATGGGAAGTGACTTTGGGAACCCTTTACGGAAATTCAAACTTGTTTTTTTAGGGGAGCAAAGCGTTGGGAAGACATCGCTGATAACAAGGTTCATGTATGACAGTTTTGACAACACTTATCAGGTATAATATTGTATTTCAGTGCAGACGCTATATAGTTTTTCAGCTATGATTGTTCATGTTTTAATCTTACTATCAATCGCTTTACCATCACAGGCAACTATTGGCATTGACTTTTTATCAAAAACCATGTATCTGGAGGACCGAACTGTGAGGTTACAGCTATGGGACACTGCAGGGCAGGAGCGTTTTAGGAGTCTTATCCCGAGCTACATTAGAGACTCCACAGTGGCTGTGGTGGTGTATGATATCACAAATATCAATTCATTCCAGCTAACCTCTAAATGGATTGATGATGTCAGAACAGAGAGGGGAAGTGATGTCATTATCATGCTGGTGGGCAATAAAACAGATCTAGAGGAAAAGAGGCAAATCACTATAGAGGAGGGGGAGCAGCGGGCCAAAGAGTTGAATGTGATGTTTATCGAGACTAGTGCAAAGACCGGCAGTAATGTTAAACAGTTGTTTCGGCGAGTGGCCGCTGCTTTGCCTGGTATGGAGAGCTTGGATGATAATAACAAAGAAGGAA

Function

symbol description
rab6bb Predicted to enable GTPase activity. Predicted to be involved in Golgi vesicle transport; intracellular protein transport; and retrograde transport, endosome to Golgi. Predicted to be active in Golgi apparatus. Is expressed in basal plate midbrain region; nervous system; and trigeminal placode. Orthologous to human RAB6B (RAB6B, member RAS oncogene family).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0012505 endomembrane system cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-28 Predicted to enable GTPase activity. Predicted to be involved in Golgi vesicle transport; intracellular protein transport; and retrograde transport, endosome to Golgi. Predicted to be active in Golgi apparatus. Is expressed in basal plate midbrain region; nervous system; and trigeminal placode. Orthologous to human RAB6B (RAB6B, member RAS oncogene family).

Ensembl:

ensembl_id ENSDARG00000031343

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030836 False 2910 mRNA 0.40 8 22795494 22803665
TCONS_00030837 True 744 lncRNA 0.42 6 22795557 22799328

Neighbor

gene id symbol gene type direction distance location
XLOC_015403 espnlb coding upstream 3034 22765492 ~ 22792460 (+)
XLOC_015402 kif1ab coding upstream 36904 22694382 ~ 22758590 (+)
XLOC_015401 zgc:161973 coding upstream 118475 22659787 ~ 22677019 (+)
XLOC_015400 bokb coding upstream 145059 22640215 ~ 22650435 (+)
XLOC_015399 sept2 coding upstream 180128 22592139 ~ 22615366 (+)
XLOC_015405 aire coding downstream 5281 22808946 ~ 22846553 (+)
XLOC_015406 amotl2b coding downstream 48167 22851832 ~ 22861178 (+)
XLOC_015407 NA coding downstream 107527 22911192 ~ 22916384 (+)
XLOC_015408 NA coding downstream 181465 22985130 ~ 22992029 (+)
XLOC_015409 mknk2a coding downstream 203127 23006792 ~ 23024952 (+)
XLOC_015392 CT956055.1 non-coding upstream 824085 21882881 ~ 21971409 (+)
XLOC_015388 NA non-coding upstream 1258222 21534038 ~ 21537272 (+)
XLOC_015385 NA non-coding upstream 1359093 21431725 ~ 21436401 (+)
XLOC_015384 dre-mir-26a-2 non-coding upstream 1419900 21375467 ~ 21375594 (+)
XLOC_015372 rxrga non-coding upstream 2018653 20725684 ~ 20776841 (+)
XLOC_015410 NA non-coding downstream 221656 23025321 ~ 23026978 (+)
XLOC_015414 NA non-coding downstream 352347 23156012 ~ 23184804 (+)
XLOC_015416 BX548024.3 non-coding downstream 454112 23257777 ~ 23257897 (+)

Expression


Co-expression Network