XLOC_015411 (csnk1g2a)


Basic Information

Item Value
gene id XLOC_015411
gene name csnk1g2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 23039041 ~ 23078748 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030846
AATTTCACAACTTAGAGGCAGCGATGTGATCGGCGGCAGCGGAGGAAACGCGAGAGCTGCACGGAGAGGCTTAAAGAGACATCAGCGAAGAGGGAGAAAAAATGATAATGGCTTCAAGGAATGAGCATTAAAACCGACCAAATGGGGACTGTCATCGACTAATACCACAGAGATCTAGATATCGTAAGATGTACTTCTGATGTGCCGGCAGTTTCCTCTCAACGGCAAGTTTGATATGCTGTGTGTTCATCCATGGACACAGGGAATGCCTGACAAATCTCTGCAGAACCACCTGGAGTGGGTGCAAAGGATGGAAACCGACGCTGGACAGCATCTCACTTTCACCAGCTAGGGTCGTGCGCATGTGTCCATCTCCCAAAGAACGAGCTCCTCTGCGGTTGGATTTAAGGAAGATTTCCATATGATGTCCTCATCCTAAATCACATCACCCTTGGATTCCACCATCAATAAAAGCCGTTCATGTGTAGAGCCATATTGTGGATAAGCCATTCCCTCCATTCTCTCTTTCTCTAAATTCCTCTCCTCCATCCCATTCCCCATACCCCTGTTGCTAGTTGTTTTGGTGGCTCTGTGATTTTATGGCAGTGGAGTAATCGTGGAGAGGCCGGGGTATCACAAGCTTATGGATTTTGAtaagagaggaggaggaggaggaaaaggagAAGCGGAGGACGGAAAGAGAATGTCTAAGACTGGCGGGAGCAGGACAGGGCATGGGGGCAGCCGAGGCTCCGGGAACAACACTGGAGTGCTTATGGTTGGCCCGAATTTTCGGGTGGGAAAGAAGATTGGCTGCGGGAACTTCGGCGAGCTTCGACTCGGGAAGAATCTTTACACTAATGAATATGTGGCCATTAAACTGGAGCCAATCAAATCAAGAGCACCCCAACTCCATCTCGAATACAGGTTTTACAAGCAGTTGGGAAATGCAGAGGGTGTTCCTCAGGTCTACTATTTCGGGCCTTGTGGGAAATATAATGCCATGGTGCTGGAGCTGCTGGGACCCAGTCTAGAGGACCTTTTTGACCTCTGCGACAGAACCTTTTCACTTAAGACTGTCCTCATGATAGCCATTCAGCTGATCACACGGATGGAGTTTGTGCACACAAGAAGTCTGATCTACAGGGATGTTAAGCCTGAAAACTTCTTGGTGGGCCGACCGGGGACCAAGAGGCAGCATACAATCCACATCATCGACTTTGGACTTGCCAAAGAATACATCGACCCCGAGACCAAAAAACACATCCCTTACAGGGAGCACAAGAGTTTAACAGGGACGGCTCGCTACATGAGCATCAACACACACCTGGGGAAGGAGCAAAGCAGGCGGGATGATTTGGAGGCGCTAGGTCATATGTTTATGTACTTCCTACGAGGCAGTCTGCCTTGGCAAGGCTTGAAGgcTGACACGTTGAAGGAGCGATATCAGAAAATCGGAGACACCAAAAGGGCAACCCCTATAGAAGTGCTCTGTGAGAGTTTCCCTGAAATGGCCACCTACCTACGCTACGTGCGGAGACTGGATTTCTTTGAAAGACCGGATTATGAATACTTGAGAAAACTCTTTACAGACCTCTTCGACAGAAACGGCTATGTTTTCGACTATGAATATGACTGGGTCGGCAAGCCACTGCCGACTCCAATAGGACCCATGCCTAGTGACACACCACTGCAGCCCAGCAACAGAGACAAAGCACAACCACAGACCAAAAACCAGGTTATGAGCTCGACCAACGGAGAAGTAAATACAGACGATCCCACAGCGGGACACTCCAACGCTCCCATAACTGCCCCAGCTGAGGTGGAGGTGGCCGATGATACAAAGTGCTGTTGTTTTTtcaagaggaggaagaggaaagCGCTCCAGCGGCACAAGTGAGGAGGAACATCTTTGAAACGTTAAAGTCACTGGTGCgtttaaagaaaaactaaaaagaaaaaaaaaaactaaagcaaagGACTCGAGCTGAAACGTGGAGCAACTCCCTCCCTTTCTGTCTCTGCTCTACTTCAGAACAGAAAGTCACTGCCTCACTTTCGGCATCCACTCAGAGAGACTCACCTCAGTACTCTGACACTCTTTCTAAAGAAACAATTCAGTGgaacaaatacatatatttgtaCAATGTGGGACACCAGAGGAGACTTCAGTGGTCAGATATAAGACAAGATATATACGTTATGTGACTTAAACCCAGATGGACTGTTTAAACTTGTATTTTAGAAAACCATTATTTGAGAATTTAAAGGCAAGCAGACTCGcatacacgtacacacacagacatctgTTCACCTCGACACACTGGCTGGATGAGTGAGTGAGTAATGTGCTCCATggtgttttcttttcttattttttttattattataatgggATCAAAATCTGTGAGGAAAGACTGACGTATGGAGAAATGTACATCGGAATCAGACAAACCAATTGTGTAAATTGTCTTTCcttttttctctcattttatttttgtaatttaagaaGTTGTTTTGAAGATTTGCTCTCCTTGAATTGAACAGTTTTACTTATGTTGTAGAaagtgtgaacttttttttttttttaacccgcTCCTAgtgtttattttctctctctcttttttttttacttccttgTTTTTTCCTGTCGATGAGGAGGTTGTACACAGTGGCTGGTCTCAGGTACTGTGGGAGATGGAGAGAAACAAAATCATTACCTCTCCTCTGTGAATTGCACTTTTAgggaggaaaaaaacaaaacaaaaaaaaagcaaaccgttatgccattgaaatgaatgggaatAAAAGCAAGACGTGGGATCATTTACACAGCAGGCTGGTCTCTCCCAAAGGGACGAAAGTGATTCTCTCAGTCAAACTTGTGCTTTTGTTGTTTTTCGCATTAGATTATGTTACCTGGGAATCATAGTTTGTGCCTTTCCAAGTAAACATTTAACACTAACGTGTCCCTCTCTACGATTCCTATCCAGGTGAGGCGTCCATGGCCCTCTCAGATGGTTTGTTCTGCGCTCCATGCCAGTCTTTTGAGTCTGTTGGCATTTCTCAGATTTCTTTTTCACTGTTGTAAAGTGTATCATAGCAAAGCTCCATGACTGCGCGAGTCTGTGGGTTTATACGCAGTAACAGAGGTTGCCTATCAGAGTGAGGATGTGTATTGATTTACATACCTATTAAATGTTGCTTTTCTTCTATGCCTCA
>TCONS_00030847
ATGTCCTCATCCTAAATCACATCACCCTTGGATTCCACCATCAATAAAAGCCGTTCATGTGTAGAGCCATATTGTGGATAAGCCATTCCCTCCATTCTCTCTTTCTCTAAATTCCTCTCCTCCATCCCATTCCCCATACCCCTGTTGCTAGTTGTTTTGGTGGCTCTGTGATTTTATGGCAGTGGAGTAATCGTGGAGAGGCCGGGGTATCACAAGCTTATGGATTTTGAtaagagaggaggaggaggaggaaaaggagAAGCGGAGGACGGAAAGAGAATGTCTAAGACTGGCGGGAGCAGGACAGGGCATGGGGGCAGCCGAGGCTCCGGGAACAACACTGGAGTGCTTATGGTTGGCCCGAATTTTCGGGTGGGAAAGAAGATTGGCTGCGGGAACTTCGGCGAGCTTCGACTCGGGAAGAATCTTTACACTAATGAATATGTGGCCATTAAACTGGAGCCAATCAAATCAAGAGCACCCCAACTCCATCTCGAATACAGGTTTTACAAGCAGTTGGGAAATGCAGAGGGTGTTCCTCAGGTCTACTATTTCGGGCCTTGTGGGAAATATAATGCCATGGTGCTGGAGCTGCTGGGACCCAGTCTAGAGGACCTTTTTGACCTCTGCGACAGAACCTTTTCACTTAAGACTGTCCTCATGATAGCCATTCAGCTGATCACACGGATGGAGTTTGTGCACACAAGAAGTCTGATCTACAGGGATGTTAAGCCTGAAAACTTCTTGGTGGGCCGACCGGGGACCAAGAGGCAGCATACAATCCACATCATCGACTTTGGACTTGCCAAAGAATACATCGACCCCGAGACCAAAAAACACATCCCTTACAGGGAGCACAAGAGTTTAACAGGGACGGCTCGCTACATGAGCATCAACACACACCTGGGGAAGGAGCAAAGCAGGCGGGATGATTTGGAGGCGCTAGGTCATATGTTTATGTACTTCCTACGAGGCAGTCTGCCTTGGCAAGGCTTGAAGgcTGACACGTTGAAGGAGCGATATCAGAAAATCGGAGACACCAAAAGGGCAACCCCTATAGAAGTGCTCTGTGAGAGTTTCCCTGAAATGGCCACCTACCTACGCTACGTGCGGAGACTGGATTTCTTTGAAAGACCGGATTATGAATACTTGAGAAAACTCTTTACAGACCTCTTCGACAGAAACGGCTATGTTTTCGACTATGAATATGACTGGGTCGGCAAGCCACTGCCGACTCCAATAGGACCCATGCCTAGTGACACACCACTGCAGCCCAGCAACAGAGACAAAGCACAACCACAGACCAAAAACCAGGTTATGAGCTCGACCAACGGAGAAGTAAATACAGACGATCCCACAGCGGGACACTCCAACGCTCCCATAACTGCCCCAGCTGAGGTGGAGGTGGCCGATGATACAAAGTGCTGTTGTTTTTtcaagaggaggaagaggaaagCGCTCCAGCGGCACAAGTGAGGAGGAACATCTTTGAAACGTTAAAGTCACTGGTGCgttt
>TCONS_00030848
AAGAGTTTAACAGGGACGGCTCGCTACATGAGCATCAACACACACCTGGGGAAGGAGCAAAGCAGGCGGGATGATTTGGAGGCGCTAGGTCATATGTTTATGTACTTCCTACGAGGCAGTCTGCCTTGGCAAGGCTTGAAGgcTGACACGTTGAAGGAGCGATATCAGAAAATCGGAGACACCAAAAGGGCAACCCCTATAGAAGTGCTCTGTGAGAGTTTCCCTGAAATGGCCACCTACCTACGCTACGTGCGGAGACTGGATTTCTTTGAAAGACCGGATTATGAATACTTGAGAAAACTCTTTACAGACCTCTTCGACAGAAACGGCTATGTTTTCGACTATGAATATGACTGGGTCGGCAAGCCACTGCCGACTCCAATAGGACCCATGCCTAGTGACACACCACTGCAGCCCAGCAACAGAGACAAAGCACAACCACAGACCAAAAACCAGTCTCCAGAACCTAAAGGAAGTGAGTCCCAGCCCACTCCCGTGACCAACAGGGAGCTCCTGGGGTCGCACCTCACGGCCGATAGGCTGGGGGGCTCTGTCCAGGTTATGAGCTCGACCAACGGAGAAGTAAATACAGACGATCCCACAGCGGGACACTCCAACGCTCCCATAACTGCCCCAGCTGAGGTGGAGGTGGCCGATGATACAAAGTGCTGTTGTTTTTtcaagaggaggaagaggaaagCGCTCCAGCGGCACAAGTGAGGAGGAACATCTTTGAAACGTTAAAGTCACTGGTGCgtttaaagaaaaactaaaaag

Function

symbol description
csnk1g2a Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in several processes, including Wnt signaling pathway; peptidyl-serine phosphorylation; and positive regulation of canonical Wnt signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm; nucleus; and plasma membrane. Is expressed in nervous system; otic vesicle; pectoral fin; presumptive neural retina; and solid lens vesicle. Orthologous to human CSNK1G2 (casein kinase 1 gamma 2).

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0006897 endocytosis biological_process
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6445 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in several processes, including Wnt signaling pathway; peptidyl-serine phosphorylation; and positive regulation of canonical Wnt signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm; nucleus; and plasma membrane. Is expressed in nervous system; otic vesicle; pectoral fin; presumptive neural retina; and solid lens vesicle. Orthologous to human CSNK1G2 (casein kinase 1 gamma 2).

Ensembl:

ensembl_id ENSDARG00000005458

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030846 False 3222 mRNA 0.45 11 23039041 23078748
TCONS_00030847 False 1516 mRNA 0.50 10 23048620 23077466
TCONS_00030848 True 777 mRNA 0.51 8 23062085 23077483

Neighbor

gene id symbol gene type direction distance location
XLOC_015410 NA coding upstream 12063 23025321 ~ 23026978 (+)
XLOC_015409 mknk2a coding upstream 14089 23006792 ~ 23024952 (+)
XLOC_015408 NA coding upstream 47012 22985130 ~ 22992029 (+)
XLOC_015407 NA coding upstream 122657 22911192 ~ 22916384 (+)
XLOC_015406 amotl2b coding upstream 177863 22851832 ~ 22861178 (+)
XLOC_015412 mfsd12a coding downstream 2499 23081247 ~ 23103149 (+)
XLOC_015413 si:dkey-218h11.6 coding downstream 51641 23130389 ~ 23132134 (+)
XLOC_015414 NA coding downstream 77264 23156012 ~ 23184804 (+)
XLOC_015415 kifap3b coding downstream 144191 23222939 ~ 23293501 (+)
XLOC_015416 BX548024.3 coding downstream 179029 23257777 ~ 23257897 (+)
XLOC_015392 CT956055.1 non-coding upstream 1067632 21882881 ~ 21971409 (+)
XLOC_015388 NA non-coding upstream 1501769 21534038 ~ 21537272 (+)
XLOC_015418 NA non-coding downstream 327705 23406453 ~ 23479246 (+)
XLOC_015419 NA non-coding downstream 336135 23414883 ~ 23421047 (+)
XLOC_015420 NA non-coding downstream 372024 23450772 ~ 23451401 (+)

Expression


Co-expression Network