XLOC_015555 (si:ch211-106h4.4)


Basic Information

Item Value
gene id XLOC_015555
gene name si:ch211-106h4.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 31597841 ~ 31607080 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031094
ATCGGGccttgatgtgcttgagctcaaccactctcactggcagagctgtgagaaaaactaaacaatattcaCCTTATTTTTTTGCGTACGAGCAGGTGCAGGCATTTGATTCTTTTTTGCTCGAgatttccggtctcattcacttgcattcatttttaaacgttaaaaacagctcgttacgCTGCTTAATGCTGcaaattgatattttcttattatattattctgctttgtcagTATAGTAATGCTAACACTAGTTTGTACccattaaaaagttttattgtaaaattacaGGCTATTATTTGTACATAAAGAGCTCAAGTCATGGGCGATCAGGAGCATCAGCTCATCTGAAGTCTCCGCTGTCGCCCCCCACTGGACCTGATGGGTATTGCTTCACATTCTGGTATCACATGTTTGGAACAACAGTGGGATCATTAAGAATGTCTGTATTTGACATTTCATCCAACCACATCACATCAATGTGGCAGAGAAAGGGATCTCAGGGGAGTGAGTGGCAGATGGCTCAGAGTTATGTGAAAGTGACACAGGTTCATCAGATATTAATTGAGGCTTCAGTCGGAGGACTGTCTGGACACATTGCTATAGATGATTTATCCATCACTGAAGGTGCCTGTGCCCCCAcagAGGGTTTTTGCAACTTTGAAGAAGGAGACTGTGGTTGGACACAACAGGCTGATGATGACCTGAACTGGATCCGAGTTTCAGGAAATGATGTCAAATCTAAATCTAGACCTGGTTTCGACCATACAACTAACACAGCAAGCGGACACTACTTTTACATGGAAAGCACACCTGGTCAATTGAAAGGAAGTAGTGCTATAATGACATCCCCTGTGCTTCAAACAGGGGATGCCAAGTGTCTCCAGCTGTGGTATTACATGGAGGGAGAGGGTACTGGTACCCTAAATGTGTATCAACAGTTCTCAGGCAGTTCTCGGCCCCTGCTGGTGACGCAGTCTGGGGAACAAGGTGAACTATGGAGGTTTGCTCAGAGCCCTCTGACTTTCTCTGAGTCAAACTACAGGATCGTGGTGGAGGGGATTACAGGCCAGACTGAACAGGGAGTCATAGCGCTCGATGATGTTCAGGTTTCAAACTATCCCTGCACTCCTGCGGGGCAGTGTGACTTTGAGGCAAACTTCTGCAGCTGGATGAATGTGTTGGAGGTGGATGACGGAGACTGGCTCAGAGCTCAGGCAGGCACTGGAAATCACACACGGCCCAGTGTGGATCACACCACCAACTCTTCAACAGgtTACTATCTTTTTATGGACAGTTCTGTGGGCAACTGGGGAGATACGGCCATGATTCTGAGTGAGACATTCAGCCCTGACAGCAGGGGGCACTGCTTCACATTCTGGTATCATATGTCTGGACAGAAAGTTGGGACACTCAATGTATACACCAACAACAGGACCACCCATAGAAGTGGGCAGAAGTTTGGCCAGATAGTGTGGGTGGAGACAGGTGATCAGGGTGATGTCTGGAGGAGAGCTAACATTTATGTGGCACACAGGGAACATTTCTGGGTATCAAACTTCGTCatgaaaataaattcacagaatcAATGTGAATCAGACTGATGCAATCTGTACATCgtcatctctttctctctccacaGTTTATATTTGAGGTTCTGAAAGGAGAAGGTGCTAAAGGAAGTATAGCTCTCGATGATATCAACATTGTTCCTGGACCTTGTGACTCAGATCCCACTTCTCCACCTCCACACCACAGTGACAGTAAGAGATACATTAAAGCCTACAAACCTTATAAGCCTGCAAgctttatagtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgttccatcatttacaaataaattggccaagattttttttaaatttcttaacAAGTCACCAAAAAAGAATACTTGCTGAACCATtttacactcttttttttttattaaatatgttaaattaaaaaaagaattgctTTGGTCAAattctattttctatttattataagAAAGACTTTACGAAGACTTATGTAAGCATTATTAAGCTTTACAGATAGGGAAAAATTAGACCACTTGTAAATTTATTCTTTTACACTTCTTCCAAGAggcaaaatataaatatgttataatatattttgtaaacattttgtcattttttttttcaaaaaatgacaGTTTTCAgacttttgtatttacatttttagactacacaataccatttttaaaaattgattatGATTTTGTTAATTTATGACCACTAGGCCACACCACTACCCTTGAGggtgattataaatatttaaatattgcatgCAACAGCACACCCACATTAATAAGTCTATAtatacactaataataataatagtaatacattttatttaaaggtgccttTCTGGCAACTTAAGGACACCATACAATAAAACTAGcgataaaacaacaagagaaataatataGAAGTAAACACAACTCTAGCGCAGAtacaattaagtattaaaagccatcttaaataagtgaGTTTTGAGTCATGTTTTGAATAGTGGAAGGAAGTCAATGTTTCtgaagctcatggaagtcatacacaatattaattctgtttccactgcaccatgactttatattctatactgtacattatttattttaagcgacaagacttttgtctgagcaaagtcagaccttactgtcctaattaaataattaaaaatcaaggcatgatcatattttatttcgtTAAAATATGCGtagtctagaggcctttgccaAAAAAtttactagaagtcaagttatttatttttcctaaaactcggataggcgacaagacttttgtcaggtagtgtatttatttttagtgttcTTGAGTGTCAAAAGGGTTTCGGAACTACTACTAGTGCTACTGTTGTGTTATTAATCTAACATGATTACCGCAGGGGtcgcaaaacaaaatatattttagaactAATCCGTATTTCCTagaaaatgtgttaaattgtaatatttttatctgAAATATGGAAGAAATGTTAAATGACTGGACCTAGACTAGACTTTACAATAATATACTGCAATATTGTGTTAACATTTTACTAAAACTCAAACCTAATAAACAGAAAATTTAAAGAAACTTTTCATGTCTCTTTTTCCAAAGCTACTGTATATAATTTGTGGGTATTGTCATATTTTTGTTGCTTTGATTTGGATAAAATCATTAGCCAAatcaataaatgtaaatgtaatgtaatattggCGAAATTGGTTCGATTGTGCTGTAAATTGTCAAATCTGTTCAGCTGTAGGCATTGGTGTTGGAGTGGGAGTGACGCTTCTGGTAATATTTATTGTTAGCGCTGTCCTTATTGTGTGGAATAAAAGCAGAAAAAGGTATGCACTGCACATCACATGAcaaatttgaaaacaaataaagaaaaaggcgataaacattttgtttgtttctttacagGGAACCAATACTTGAAGATGATGAGCTCGATAGAAACTTTTCTTATAGCCGCTTTGACTGCAATATGAGCGTGAGTATTTTCTTGACTGTAAACATACTGTACTAAAACTATTCTCATGTAaggttttaattaaaaattgttttgctatttttgcCAGGGTTTAACGCCCACAGCAGAGAGCAGCGATTTCAGTGACTTGAGGACAATTTCACTTTCAGTAGATGGAAATGATGCATCTTTCATATAAGATGATTCATTGTGCACTGAAAGACTGCAGCTCTCAATCCAAATTCAGTTATTCCCACAACTGTAGCTatgagaatgaatgaatcattgtcAAACAGCACAAACATGACACTATCTACTGTAAATTTAATTCAATGGCTCATTggtaataattgtgttgtttttactgTTTCAATTTCTATCTCTAACATGTTTGGAGTACGTACAGTATAATActgtacatgttattattatatattagtattatttcagGTTTATTTGACAGGGAAAATGCACATTTATGATGCAGCAATGTACAATGTGCCAATATTTGCCAAAAGGCTATTTTTTATCTGcagttgaattacagaaattaaaatttattagGATGAATAAATCCTGTACAGTAGATAAATTGGTCATAGTTTATGCTAAATAAAGTTTCAGTTCTTAATTTGGTGACCTATTTCTACATAAAGATCTGGCAGACTGAGTTGGCGGAATTGTTTCCTTTGTTCTATAAAAGCAAATGgttttgttgtgtttgtgagtATCCACAAATAAAACACCTCTTTACAGTTTTGAACAATGTCTCAGTCTTATCTGCATGACCAAAATGACATAAATCACTGCCATCAGATTCATGGGTTGAAGTGTTTATGCCG
>TCONS_00031095
TGATGACCTGAACTGGATCCGAGTTTCAGGAAATGATGTCAAATCTAAATCTAGACCTGGTTTCGACCATACAACTAACACAGCAAGCGGACACTACTTTTACATGGAAAGCACACCTGGTCAATTGAAAGGAAGTAGTGCTATAATGACATCCCCTGTGCTTCAAACAGGGGATGCCAAGTGTCTCCAGCTGTGGTATTACATGGAGGGAGAGGGTACTGGTACCCTAAATGTGTATCAACAGTTCTCAGGCAGTTCTCGGCCCCTGCTGGTGACGCAGTCTGGGGAACAAGGTGAACTATGGAGGTTTGCTCAGAGCCCTCTGACTTTCTCTGAGTCAAACTACAGGATCGTGGTGGAGGGGATTACAGGCCAGACTGAACAGGGAGTCATAGCGCTCGATGATGTTCAGGTTTCAAACTATCCCTGCACTCCTGCGGGGCAGTGTGACTTTGAGGCAAACTTCTGCAGCTGGATGAATGTGTTGGAGGTGGATGACGGAGACTGGCTCAGAGCTCAGGCAGGCACTGGAAATCACACACGGCCCAGTGTGGATCACACCACCAACTCTTCAACAGgtTACTATCTTTTTATGGACAGTTCTGTGGGCAACTGGGGAGATACGGCCATGATTCTGAGTGAGACATTCAGCCCTGACAGCAGGGGGCACTGCTTCACATTCTGGTATCATATGTCTGGACAGAAAGTTGGGACACTCAATGTATACACCAACAACAGGACCACCCATAGAAGTGGGCAGAAGTTTGGCCAGATAGTGTGGGTGGAGACAGGTGATCAGGGTGATGTCTGGAGGAGAGCTAACATTTATGTGGCACACAGGGAACATTTCTGGTTTATATTTGAGGTTCTGAAAGGAGAAGGTGCTAAAGGAAGTATAGCTCTCGATGATATCAACATTGTTCCTGGACCTTGTGACTCAGATCCCACTTCTCCACCTCCACACCACAGTGACACTGTAGGCATTGGTGTTGGAGTGGGAGTGACGCTTCTGGTAATATTTATTGTTAGCGCTGTCCTTATTGTGTGGAATAAAAGCAGAAAAAGGGAACCAATACTTGAAGATGATGAGCTCGATAGAAACTTTTCTTATAGCCGCTTTGACTGCAATATGAGCGGTTTAACGCCCACAGCAGAGAGCAGCGATTTCAGTGACTTGAGGACAATTTCACTTTCAGTAGATGGAAATGATGCATCTTTCATATAAGATGATTCATTGTGCACTGAAAGACTGCAGCTCTCAATCCAAATTCAGTTATTCCCACAACTGTAGCTatgagaatgaatgaatcattgtcAAACAGCACAAACATGACACTATCTACTGTAAATTTAATTCAATGGCTCATTggtaataattgtgttgtttttactgTTTCAATTTCTATCTCTAACATGTTTGGAGTACGTACAGTATAATActgtacatgttattattatatattagtattatttcagG

Function

symbol description
si:ch211-106h4.4 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-14 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000093629

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031094 False 4345 mRNA 0.37 7 31597841 31607080
TCONS_00031095 True 1477 mRNA 0.45 9 31600661 31606689

Neighbor

gene id symbol gene type direction distance location
XLOC_015554 NA coding upstream 57251 31537338 ~ 31540590 (+)
XLOC_015553 cacnb2b coding upstream 78179 31475772 ~ 31519662 (+)
XLOC_015552 si:dkey-32m20.1 coding upstream 139981 31454562 ~ 31457860 (+)
XLOC_015551 stam coding upstream 145235 31437547 ~ 31452606 (+)
XLOC_015550 colec12 coding upstream 162683 31382590 ~ 31435158 (+)
XLOC_015556 si:ch211-106h4.6 coding downstream 7453 31614533 ~ 31626209 (+)
XLOC_015557 si:ch211-106h4.12 coding downstream 58756 31665836 ~ 31669111 (+)
XLOC_015558 ackr4a coding downstream 64465 31671545 ~ 31674403 (+)
XLOC_015559 NA coding downstream 176932 31784012 ~ 31786282 (+)
XLOC_015560 rnf182 coding downstream 197502 31804582 ~ 31805604 (+)
XLOC_015528 NA non-coding upstream 137512 30365801 ~ 31460329 (+)
XLOC_015549 NA non-coding upstream 305238 31291646 ~ 31292603 (+)
XLOC_015545 CT955962.3 non-coding upstream 380063 31100444 ~ 31217778 (+)
XLOC_015547 CT955962.1 non-coding upstream 489427 31107929 ~ 31108414 (+)
XLOC_015564 NA non-coding downstream 259419 31866499 ~ 31868755 (+)
XLOC_015567 NA non-coding downstream 412562 32019642 ~ 32127930 (+)
XLOC_015568 NA non-coding downstream 542041 32149121 ~ 32188991 (+)
XLOC_015569 NA non-coding downstream 657275 32264355 ~ 32266672 (+)

Expression


Co-expression Network