XLOC_015562 (epdr1)


Basic Information

Item Value
gene id XLOC_015562
gene name epdr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 31833997 ~ 31836902 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031104
GTTCGTGACATGGATGCTGCTGCCAGTCATTTGTCATTGGATGAAGCATCCCGCAAACATCTCTCTGCTCCACTCACAGGCCTCTGAATCGTTGCGTGATTTGGTTCATTTTCTCGTCATTATTGCGGTGAACTAGCAGAGATGTTGGTGTTTGTTGTTTTATGGCAGGTGTTGTGTTTATCCGTGTGTTCGGGCTTTCGGGCGGCTCCTCAGCCCTGCCCCGCGCCGCTGCAGTGGGAGGGTCGGACGGTTGAATATGATCACGGCACCGGGAGAAACACACGGGCAGCGGTCTCCTATGACGCCCAGAACCAGAGAATCAGGGTCCTGGAGCAGAAGACTGGACACACACCATGCAAGAAGTTCTTTGAGTACATCTACTTGTTCAAAAGTGGAGTGCTATTTCAGATTGAGGAAATTACAAAGCAGTGTGCAAAAATTGCTCTGACGGAGGCCTGGGATCCTTATGATATACCCCTCAACTCCACATACGAGGACCAGTACTTTATTGGAGGACCTGGAGACATGATCGAGGTCCAAGAGTGGTCTGATCGCAAACCAGCTCGCAAAAACGAAGCTTGGGTTGGTGTGTACACTTTGAAAGACTGCTATCCTGTGCAGGAGACTTACACCAAAAACAGCAGTGTTACCACGTCCACTCGCTTCTTCGACCTTCAGCTGGGCATCAGTGACCCTGAGGTGTTCAATCCACCCAGCACCTGCCTGTCTGCTCTGTCTAAGAGGATGACATCTGACTGCTGAAAATCAATGTCTGCTCACTCAGCATTAAATAACATACGGCTCTGCATTAGATCATCCATAATAAATAGATGGCTTTCAATTAACTAATATTACACTGACAAAGAGCGCATGGAATGAGCGCAGATACTGTTAATTAAAGGCTTTGAAATAAACCAGGATTGTTAGTTTTAAGTTGAACAGTTCATGTTGATTTATAGTGTGAACTGTGCCTCATATCTTATTGAACCCTGATTTTTTCATGCACAGGGTGGACAAATGTAGTACTTTTTTAACAGTTAATGTtcagttttagttatttaatttagaatttaaaGTGATATTTCACACCAAAATGacaatgtactcactatttacttaatcttggtttcaaacctttatgggtttctttccaCTGTTAAGGAAATATATATACTACGAAAGTTGCTGATTACAGTGTTCgaacacttttcaaaaaaatttctttTGTGTCTAACGGTAGGAGAAGAAGctcttaaaggtttaaaacaagtaaaaagtgagtagatgatgacagaaattcatatttttgagtgaacttgcCCTTCAATTGGGTTTATTAAAGTGTTGATGCTTATACTCTTTATTTTACAATGTTGTTTTATAGCTGCAGAAAGCCTAATAATTTGATTCTTGTTTGAATAAAATTGTTTACCTTGC

Function

symbol description
epdr1 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within cell-matrix adhesion. Predicted to be located in extracellular region. Predicted to be active in lysosome. Is expressed in hindbrain; midbrain hindbrain boundary; optic stalk; spinal cord; and telencephalon. Orthologous to human EPDR1 (ependymin related 1).

GO:

id name namespace
GO:0007160 cell-matrix adhesion biological_process
GO:0005764 lysosome cellular_component
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-113 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within cell-matrix adhesion. Predicted to be located in extracellular region. Predicted to be active in lysosome. Is expressed in hindbrain; midbrain hindbrain boundary; optic stalk; spinal cord; and telencephalon. Orthologous to human EPDR1 (ependymin related 1).

Ensembl:

ensembl_id ENSDARG00000045420

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031104 True 1437 mRNA 0.41 3 31833997 31836902

Neighbor

gene id symbol gene type direction distance location
XLOC_015561 ranbp9 coding upstream 6037 31806602 ~ 31827960 (+)
XLOC_015560 rnf182 coding upstream 28393 31804582 ~ 31805604 (+)
XLOC_015559 NA coding upstream 47715 31784012 ~ 31786282 (+)
XLOC_015558 ackr4a coding upstream 159594 31671545 ~ 31674403 (+)
XLOC_015557 si:ch211-106h4.12 coding upstream 164886 31665836 ~ 31669111 (+)
XLOC_015563 stard3nl coding downstream 1540 31838442 ~ 31853345 (+)
XLOC_015564 NA coding downstream 29597 31866499 ~ 31868755 (+)
XLOC_015565 otulinb coding downstream 105488 31942390 ~ 32009716 (+)
XLOC_015566 mycb coding downstream 179354 32016256 ~ 32018371 (+)
XLOC_015567 NA coding downstream 182740 32019642 ~ 32127930 (+)
XLOC_015554 NA non-coding upstream 293407 31537338 ~ 31540590 (+)
XLOC_015549 NA non-coding upstream 541394 31291646 ~ 31292603 (+)
XLOC_015547 CT955962.1 non-coding upstream 725583 31107929 ~ 31108414 (+)
XLOC_015546 CT955962.2 non-coding upstream 732424 31101088 ~ 31101573 (+)
XLOC_015568 NA non-coding downstream 312219 32149121 ~ 32188991 (+)
XLOC_015569 NA non-coding downstream 427453 32264355 ~ 32266672 (+)
XLOC_015570 NA non-coding downstream 548786 32385688 ~ 32390974 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G32071 NA non-coding CI01000004 null 11771029 ~ 11773769 (-)