XLOC_015563 (stard3nl)


Basic Information

Item Value
gene id XLOC_015563
gene name stard3nl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 31838442 ~ 31853345 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031105
TGGTCAGATGGTGCGGAATTTGTAACGATACAGATGTTTGCTGATTTTGTCGGTTGGCTGTAACAAAACGCACACTTTTATAAGATTACACATCAAGGACTAGGCATGACCTCAGAGCGTGAGTCTCCAGAAGAGTGAGTGTGAATGGAGTGACTGGAGTAATGGACAGCCAGTGCAGCAGCAGTGTGGGCTCCAGGGCCAATTTAGGGGGTTTGGGCAACATTAACTCCACTCCCATTTCTGCTCGCGTCGAGTCCTATGAAGCAGGAGAGAAGAAGGGCATCTCTGATGTCCGAAGAACCTTTTGCTTATTCGTGACCTTTGACCTATTGTTCGTCACCTTGCTGTGGATTATTGAGCTCAATGTCAATGGAGGTATACAGCAGCAGCTGGAGCAAGAGGTGTTGAAGTATGATTACCACAAGTCTTTTTTTGACATATTTCTATTGGCTGTGTTCCGCTTTGCAGCCCTGATTCTGGCGTATGCGGTCTGTAAGCTGCGTCACTGGTGGGCCATTGCGATAACTACAGCAATCACCACTGGTTTCTTAATAGTGAAAGTAGTTGTGTCAAAGCTGCTCTCTCAGGGGGCGTTTGGGTATTTGTTACCCATCATCTCCTTCATTCTGGCGTGGATTGAAACGTGGCTGCTGGACTTTAAAGTCCTTCCTCAGGAGGCCGGTGATGAAATCAGGTATCTTTCAGTGCAGAATCGGCTGGAACATGAACCTCTTTTACCGCCGGGACCCCTTTCTGAGGGCCTGTTTTACTCTCCTCCAGAATCTTTAGCCGACTCAGATGAAGATCTTAATGATAAGCATGATCTTGAGAAGCCCATCGTCTAGCAGGTGCTAAGGGTTAAACAGCGACCTCTGGCCTCTTCCAAACTGTGTGTCTTAAAAAgggtttgtgcgtgtgtgtttgtttgaccAGAACTAGACAGTTACTCTGCCTTACATACACCATCGCCATCAACAGCAGTTTTATTTATCCGTGTCTACATGAACACAAAAGATCATAGTGCAatcttttttatatatgtttgtcAATAGTTCTCCTCAAAAAACGAACATTATACATTTACCCAAAGTTAAGTTTCAATTCTGTTTTGATGTTCTTTTAGATATTTTCAATAATTGTCAATTAAAAACTGttataggaaaaaaaataacatggaagtcaatagctaccGTCAACAACAACATCACATCTTCTTCCATGTTCAACAGTGAATACAGATTTGGAACTTTTGTAATACATAATGGCCTAAAGTTCAATTTTAGGTGAACTTTAGCTTTGAATGGgttgttcaccaaaaatgaaaatttccttttcatttattcaatctcaagttttgttttgtttctgaagAAAAGCAGCCATGGACATCCATAGCAGGAaccaaaaaaatactatgaaagccaATGGCatcattcttcaatatatcttcctctgtgttcaacggaagaaacTCAAGCATGTTTGAAACAATTCATGATGAGTTGATGATTatggaattttcattttttggtgaactatcccttttaatagTCCCCACTAAACAAATGTCTGCTCTGTTTATGCAGTATCGCTTGAAAAATGAAGGAttttaatgtgtgttttgaaCTTGTTTGGCAAAAGATATCAGTGTTGAACACAACATTTTGCTTGACACTCTTCAACTGCTTCTATGAAACATAACTGCTGTCTTacttatgtatatatacagtaaagcCGCAGATTAACACATGGATCTCACATGCATCACTGGAAAGGACCTAAATGTGAATAGCAGTATAGTCTCAGGTCTGCACTGCCACTCAAATGTCTATGAGGATTTTGTGGTtctctttttttaatgctttttttctacaagttaaatatttgaAGCAAACAGAAAGACAACAGATGCTCGGTTCACTTGCATGAAATaagtttattaaatgaagaatataTATGGCTTGTAATGATGCATGGatatgtaatacatttttatatttgccTTTTGCCTCTCTTCAGTAAGCATCCCTGTGCAAAATACATAATTATACTTCTGGTTGCGTTTACATGTGCCAAGTTTACTGAATAAGGGCTTCTGAATctgcattgcaaaaaaaaactagGATTTCTAATGCATTAAAAATAGttgctttcatttttaatttaaagactTTACAAGTCTTTTCAACTTGCATTACAGTAACCCGAGTTAAAGCATCAAGTGAGAtcttgtataacttaaaaaaataatcatttttaaagggatagttcacacaaaactaaTCAAAATTAGTTAGTGGCTGcctttttctaacatttttctgaatatttaggtttttttaatgtaaatgtggTAAATGatgatgacatttttattttttggtgaacgtcaataaaataaagtaaaaaaaaaacattgtcatggcttataaataatttaattgatatttttgAAGTCAGTTTGATGTAAGTATGCTTGTAATGACttgtaaagttaatttgatttgaCTTAAAAATTGAAAGCAGCAACTCATTTCTTTCCAAATGTGCTGCAGCCAGAATTTTCTTGAAATAATTAGATCACAACGCCTCAAGTATGGAGGATAATTGCTGATTGTGTCCTTCTTTTTGGTTAtgtattaaaatctttttttttaaaataaaa

Function

symbol description
stard3nl Predicted to be located in late endosome membrane. Predicted to be integral component of membrane. Orthologous to human STARD3NL (STARD3 N-terminal like).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-4 Predicted to be located in late endosome membrane. Predicted to be integral component of membrane. Orthologous to human STARD3NL (STARD3 N-terminal like).

Ensembl:

ensembl_id ENSDARG00000045421

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031105 True 2665 mRNA 0.37 9 31838442 31853345

Neighbor

gene id symbol gene type direction distance location
XLOC_015562 epdr1 coding upstream 1540 31833997 ~ 31836902 (+)
XLOC_015561 ranbp9 coding upstream 10482 31806602 ~ 31827960 (+)
XLOC_015560 rnf182 coding upstream 32838 31804582 ~ 31805604 (+)
XLOC_015559 NA coding upstream 52160 31784012 ~ 31786282 (+)
XLOC_015558 ackr4a coding upstream 164039 31671545 ~ 31674403 (+)
XLOC_015564 NA coding downstream 13154 31866499 ~ 31868755 (+)
XLOC_015565 otulinb coding downstream 89045 31942390 ~ 32009716 (+)
XLOC_015566 mycb coding downstream 162911 32016256 ~ 32018371 (+)
XLOC_015567 NA coding downstream 166297 32019642 ~ 32127930 (+)
XLOC_015568 NA coding downstream 295776 32149121 ~ 32188991 (+)
XLOC_015554 NA non-coding upstream 297852 31537338 ~ 31540590 (+)
XLOC_015549 NA non-coding upstream 545839 31291646 ~ 31292603 (+)
XLOC_015547 CT955962.1 non-coding upstream 730028 31107929 ~ 31108414 (+)
XLOC_015546 CT955962.2 non-coding upstream 736869 31101088 ~ 31101573 (+)
XLOC_015569 NA non-coding downstream 411010 32264355 ~ 32266672 (+)
XLOC_015570 NA non-coding downstream 532343 32385688 ~ 32390974 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_11776595_11786233 STARD3NL coding CI01000004 null 11776419 ~ 11786917 (+)