XLOC_015577 (zgc:136930)


Basic Information

Item Value
gene id XLOC_015577
gene name zgc:136930
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 32780138 ~ 32790887 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031123
CTCTGCTCGGCTCAGAATCTCACCCATAACTCTTTACCATGTCTCTGTCCATTTCAATGGCCTCCTCCAGGATGTCTGGTGGATATGGAGGTTTCGGTGCGGGTGGTGGAGCAAGGCTGGGTCTCGGGCTGGGGGGTGGTGCCAGTTTAGGTAGAGGTCTTGGTTTAGGGGGAGGACTTGGATATGGTGCAGGTGGAGGTTTTGGACTTGGCCTTGGTGGAGGTGCAGGGGCAGGTGCGGGATTGGCActgggtggtggtggtggtggtgcacTGGTTGCCAGTCCTGCATTTGCTATGGGTCGTGCTGTTGCTGCTGGAGGAGTCGGTGGAAGCTCTGCATTCGCTGCTGGTCCTGCAACCGCTGCTGTAGCCCCCATCCTTTCCAGAGCGGCTGAAAAGCACACACTGTCTGGGCTGAATGACCGCTTTTCCACATACATGGCCAAAGTGAGGGCGCTCCAGCAGGAGAACGCAGCTCTGGAGGCCAAACTGTCCCAGCTAACCGGGGGGGCAGATGTGTCTCCAGAATCCTCAGTGGCTGCAACGGTGGAGTACGAGGCTCAGCTGAGCGAATATCGCAGCACCCTGGAAACTCTCACCATCGACACTGTCAAACTAGAGATTGAGCTGGACAACGTCAGGGGAACTGCTCATGAGCTGAAGGCTAAGCTTGACTTTGAGCAAGGAGTGAAGTTTCAGCTTGAGTCTGATATCGCTGCCATGAAAAAGGACATTGAACTGGCTTCTGATCTAAGAATTGACCTGGATGCTAAATACTCTAGCTTGAAAGATGAGCTGGACTATGTGAGCAAAACACAAGAACAGGAACTATCATCTCTGCAGTCTAAACTGGGCACATCAACAATGGACACTTCAGTTTCAATGATTGAAGTAGACACCGGGAAGTCCTTTGACATTGCTACAGCACTCAACAAGATGCGAATGGAATATGAGAAAACTGTACAGCAAAACAGAGAGGAGGCAGAGGCATATTACAAACTCAAGATGGATGAGATGCAGACGGTCACGGCCAAAAACACAGAGGCTGTGTCGTTGACTAAAGCAGAGATCACATCAGCCAGGAAAGAGCTGCAGACACTGAGTTTAGAGCTTCAAGGGCTTGCAGCTGCAAGCATGAGTCTGGAGCAGAGTTTAGCAGAAGCCCAGGCACAGTCCAGTGTTGGAGTTGCTGAGTACCAGGCACAGATCGCTAGCCTCACATCAGCAATAGAGGTGGCTAAAGCTGACCTTCACAAACAGATCCTGGCCTACCAGGAGCTGCTAGACATCAAACTCGCCCTGGATGTAGAGATCTCCACCTACAGGAAACTTCTGGAAGGAGACGACTTCAAGATGCCCGAGTTTACAGAGACATCCTACACTTTTTCAGCGGGTCAAATAAAGGTCAAAGAAATCATTACAGAGACATCAGTTATCTCTGATGCAGATGATACTGAATCCTCCTAAACTCTGGGAAAAATCAAGTCAGTGCAGTCTTGATGAATGCAAAGCCCCAGCCCAAACGTGAAAAGTCAAGTCCCATCCACTGTTTCTCCAATAAAGCTGCATTGTGACGA
>TCONS_00031124
GGCTTTGCCCCACACCAGCACTCCCCAGGACTCCCCCCATAGCCCTGCCCCAAAGGACACACAAACTAGATACATCCTAACAGCGGGTCAAATAAAGGTCAAAGAAATCATTACAGAGACATCAGTTATCTCTGATGCAGATGATACTGAATCCTCCTAAACTCTGGGAAAAATCAAGTCAGTGCAGTCTTGATGAATGCAAAGCCCCAGCCCAAACGTGAAAAGTCAAGTCCCATCCACTGTTTCTCCAATAAAGCTGCATTGTGACG

Function

symbol description
zgc:136930 Predicted to be located in intermediate filament.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005882 intermediate filament cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060312-16 Predicted to be located in intermediate filament.

Ensembl:

ensembl_id ENSDARG00000055192

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031123 False 1579 mRNA 0.51 9 32780138 32790887
TCONS_00031124 True 269 processed_transcript 0.47 3 32790363 32790886

Neighbor

gene id symbol gene type direction distance location
XLOC_015576 BX323559.5 coding upstream 19806 32758663 ~ 32760332 (+)
XLOC_015575 klhl18 coding upstream 23432 32743807 ~ 32756706 (+)
XLOC_015574 BX323559.3 coding upstream 60164 32701820 ~ 32719974 (+)
XLOC_015573 NA coding upstream 132734 32644925 ~ 32647404 (+)
XLOC_015572 NA coding upstream 142633 32637080 ~ 32637505 (+)
XLOC_015578 ccr9a coding downstream 5986 32796873 ~ 32799083 (+)
XLOC_015579 si:dkey-154p10.3 coding downstream 35348 32826235 ~ 32834441 (+)
XLOC_015580 pxdc1a coding downstream 44792 32835679 ~ 32838894 (+)
XLOC_015581 opn4.1 coding downstream 52246 32843133 ~ 32846324 (+)
XLOC_015582 tmem53 coding downstream 55715 32846602 ~ 32850621 (+)
XLOC_015571 BX323559.6 non-coding upstream 172111 32604847 ~ 32608027 (+)
XLOC_015583 NA non-coding downstream 63314 32854201 ~ 32862149 (+)
XLOC_015584 NA non-coding downstream 75688 32866575 ~ 33029428 (+)
XLOC_015586 NA non-coding downstream 432075 33222962 ~ 33235257 (+)
XLOC_015590 NA non-coding downstream 676225 33467112 ~ 33468170 (+)
XLOC_015593 NA non-coding downstream 889186 33680073 ~ 33681136 (+)

Expression


Co-expression Network