XLOC_015579 (si:dkey-154p10.3)


Basic Information

Item Value
gene id XLOC_015579
gene name si:dkey-154p10.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 32826235 ~ 32834441 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031126
AAGATAAACAGTCTGCAAACCGTTGTCTTAAATTTAGTGTTCACTTCTTTTGTCAACGCACTTAGTTTTCGACAGTTATACATTGTGTTTACACATGATTATAGTGTTTACTTTTGTCAGTATAGAGAACAATAcagcaaaaatataacattttacgTTGTATCTGTGGATGGTAATTACGCTGTGGTCCCTAAACAGCACACCACCGGCGTCTACGGCACAGCGAAAACTACGTAATGTAAATATACCACTCTGTTTGATGAAGTATTTCCAAAAATGGGTGGGTTTAAAGATACATACCAAGACGTTCAACCAGTAACTCTTCGACTTGCAGAAGAAAACGTCACCTCTAGTCTCTACTGCAACTCGGCTGTGGGCATTGAAGCTCATGTGTCCACTTTAGTTGAAGCTTTCTTAGTTGAAGTATACAGATGTAGAATATGTCAATTCACTagcagccacaaagccaagattAGCCATCATGTTATGGAAAGACATGATCCAGTGTCTCCATGTCCACATCTGCCGTGTCTGGAGAAAGAGGATGAAGAGAGTTTGTGTGTAGAAATGAGGGTTAATGATGAAGAGGAAGTCGAACACAACAGTTCTCCATACGATCTAGAGAGCGACCTCCAATCTGGCTCAAAGAGCAATGAGGATCAAATGGACATGGAGCGCATTTCTTTCCTTCTTCCAATGTATGGCATGTTTCAAAACATAAGCCCAAGGTCATGTGATATTGGCCTGGGTTCCAGCTCTGATGGTAACTTGCATGTGGCACAAACCTGTGAGGTGAGCACACTTTTTGAGGAAGATAGACATGATGATAACAGCGATGAGGAGCGTGTCTTTCAGCTGGAAGATGCTAGCACAGATCTGACCGTCCCTTTGAATAGTGGCATGGACACAGAGGTCCAGGATGAGGAGATGGCCCAGTCAGCTCATCTCATGACTCTCGGTTTGTGCAGAATCTCTAGCACTAAGGGTCAACCTTCATCTGCAACTTCAGCAAAGTCCCTTCCAGAAGGTGAGCAGGATGCTGGAGATGCCAGTATGGATGCTGTAATGCAGAAAACTGAGGAGGATGGCGGATTGGCTTGCATCCTCTGCCAAACAGTCGCATCCAGTCGTGTTATGCTAGATGTGCACCTGAAATGCCATAGTGGAGAGCAAGGGTTCAGGTGCCCTCGCTGTGGTTGGGAATCAGAGGAGTGGGCCGATATGGAACATCACTGGAGGTTACATGGAAAAAGAAAAGGCACAAAGAGACATAGATGCAGTGTTTGTCCTAGGTCGTTCAGGAGAGCTGATTCCCGAGATGCACACGAAGAAAGGCATAATCATCAACGGCATCACAGGCGCTCTGAGTCTGGAGAGCCAGTGCAATGTTCTTTCTGCCTGGAATGGTGTCACTCAGGGAAGGAGTGGGAGATACACcaacattgtcatgttcaaggagGATTCAAATGTTTGCACTGTGATTTCAAAGAAAAGACATGGAAGAAGACTCTGAAACATATCCACACTCAACACAAACAGGCTGAAGCAAATCAGGACAATCAGATTGCTCACAGTAGAGATATTCAGCAACTTTCCTCATCCGCCAAGTACCCAGAATGCCTCAGAAGGATGCAGCCGGAGTTGTGGTCTCAGATTAGGAAGAAGAAGGTGAAAAACAGAGCTGTGGGCAAGGAAAAGAGCAATGAAGGGGGGAAGGACAGAGTGAAACACCTAAAGGCTGAGACATCTGTTGGACTCACTGTTACCAGACGGAAAGAGTTCTGCTGCAACCTCTGTGATAAGAAATTTTCTACTAAGTTGACTATGCGGCGTCACATGGGAATTCATCAAGGAGATAAGCCATTTAAGTGTCCACACTGTCATTACTGCACTCGTCTCAAAGCCTCGCTCATCCAACACCTACGCATCCACACAGGTGAGAAACCATACAAGTGTTTGCAGTGCTCCTATGCTTCTATTGACAGAAGCTCTCTGCGCCGACACTCAAGGACGCACACGCAAGAAAAGCCTTATTGCTGCCAGTACTGTCCATACAGCAGCATCCAGAAGAAGTGCTTAGACCTCCATTCACGCCGTCATCACACGGGAGAGTCATTTCCATGTCACCTGTGCCAGTACTCCACACCAGACCGCCAGCTGCTGGTGCGACACATGAGGAAACATCACACTGGTGAACAAAACAGTTCAGGCTGTTGAACAGCAGCTTCACAAAGAGCGCGCGGACATCCAAATGATATTaatgaatgtaataaaaaatgGTTTTTGTAATTA
>TCONS_00031127
CGCACATAAATACTCACAATTTAAACTGAATGATTTAAATGTCAAATGTAGCTTTCTTTCTAATTGACTTCTCATTACTGTAGTGAATGCTACCTAATAGCTAATTCAGAATAACAAGTAACTATTTCCAAAAATGGGTGGGTTTAAAGATACATACCAAGACGTTCAACCAGTAACTCTTCGACTTGCAGAAGAAAACGTCACCTCTAGTCTCTACTGCAACTCGGCTGTGGGCATTGAAGCTCATGTGTCCACTTTAGTTGAAGCTTTCTTAGTTGAAGTATACAGATGTAGAATATGTCAATTCACTagcagccacaaagccaagattAGCCATCATGTTATGGAAAGACATGATCCAGTGTCTCCATGTCCACATCTGCCGTGTCTGGAGAAAGAGGATGAAGAGAGTTTGTGTGTAGAAATGAGGGTTAATGATGAAGAGGAAGTCGAACACAACAGTTCTCCATACGATCTAGAGAGCGACCTCCAATCTGGCTCAAAGAGCAATGAGGATCAAATGGACATGGAGCGCATTTCTTTCCTTCTTCCAATGTATGGCATG

Function

symbol description
si:dkey-154p10.3 Predicted to enable metal ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0010468 regulation of gene expression biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-380 Predicted to enable metal ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000068366

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031126 False 2292 mRNA 0.45 8 32826235 32834441
TCONS_00031127 True 565 processed_transcript 0.40 2 32826503 32827253

Neighbor

gene id symbol gene type direction distance location
XLOC_015578 ccr9a coding upstream 27152 32796873 ~ 32799083 (+)
XLOC_015577 zgc:136930 coding upstream 35348 32780138 ~ 32790887 (+)
XLOC_015576 BX323559.5 coding upstream 65903 32758663 ~ 32760332 (+)
XLOC_015575 klhl18 coding upstream 69529 32743807 ~ 32756706 (+)
XLOC_015574 BX323559.3 coding upstream 106261 32701820 ~ 32719974 (+)
XLOC_015580 pxdc1a coding downstream 1238 32835679 ~ 32838894 (+)
XLOC_015581 opn4.1 coding downstream 8692 32843133 ~ 32846324 (+)
XLOC_015582 tmem53 coding downstream 12161 32846602 ~ 32850621 (+)
XLOC_015583 NA coding downstream 19760 32854201 ~ 32862149 (+)
XLOC_015584 NA coding downstream 32134 32866575 ~ 33029428 (+)
XLOC_015573 NA non-coding upstream 178831 32644925 ~ 32647404 (+)
XLOC_015572 NA non-coding upstream 188730 32637080 ~ 32637505 (+)
XLOC_015571 BX323559.6 non-coding upstream 218208 32604847 ~ 32608027 (+)
XLOC_015586 NA non-coding downstream 388521 33222962 ~ 33235257 (+)
XLOC_015590 NA non-coding downstream 632671 33467112 ~ 33468170 (+)
XLOC_015593 NA non-coding downstream 845632 33680073 ~ 33681136 (+)

Expression


Co-expression Network