XLOC_015581 (opn4.1)


Basic Information

Item Value
gene id XLOC_015581
gene name opn4.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 32843133 ~ 32846324 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031129
AGAGAGCATAACAGAACTGTTTGTTATTTAATCCCTTTGTTCCACTTCTCTTAAAAGATTTATCTTTACTTTTTGTACACAACAGATATACAACACGAAAACATCAACCTGCTCAGCATGAGCCATCACTCTTCATGGAGAGGGCATCACTGTGCCCCTGGAGACATCAACTGCACCGCAGGCTTTAAGGAATCTTTGGGAAGCAGAAACTACAAGTTGCTCCATGTGCCTGTCCATGGGCCAACCCACAGCCACCACCATGATCCTCCACACCCTTTCCCCACCGTGGATGTTCCGGATCATGCCCACTACATCATCGGCTCTGTTATCTTAATAGTCGGCATCACCGGAGTGATTGGAAATGCACTGGTGGTCTATGTATTCTGCCGGAGCCGTACTCTTCGCACCGCTGGAAACATGTTTATAGTGAACCTAGCTGTGGCTGATTTCTTAATGTCCGTCACCCAGTCTCCTGTGTTCTTTGCAGCCAGTTTACACAGGCGCTGGGTATTTGGCGAGCGCCCTTGCGAGCTCTACGCCTTCTGCGGTGCCCTCTTTGGAATCTGCTCCATGATGACTTTGACCGCTATCGCTGCTGATCGTTGTCTCGCCATAACTCAGCCTCTCGCCCTAGTAAGCAGAGTTAGCCGACGCAAAGCTGGAGCTGTGTTGGTCGTTGTGTGGCTCTACTCCCTGGGTTGGAGCCTTCCGCCTTTCTTTGGCTGGAGTGCTTATGTCCCTGAGGGGCTTCAGACGTCTTGTTCTTGGGATTACATGACCTTCACCCCATCAGTGCGTGCGTACACCATCCTCCTCTTTGTTTTTGTATTCTTCATCCCACTAGGCATTATAGGCAGCTGCTACTTCGCAATTTTTCAAACAATCCGAGCAGCGGGGAAGGAAATTCGAGAGCTGGATTGCGGGGAAACGCACAAGGTGTATGAACGCATGCAGAACGAATGGAAGATGGCGAAAGTCGCTCTTGTAGTCATTGTGCTTTTTATTATATCCTGGTCGCCCTATTCTGTGGTGGCTCTCACCGCTACGGCTGGTTATTCCCATTTCCTGACTCCCTATATGAATTCAGTACCTGCTGTGATTGCCAAGGCTTCAGCCATCCATAATCCAATCATCTACGCCATTACGCATCCAAAGTATCGTGTGGCTATCGCCCGTTACATTCCGGTACTTCGTCCCATCTTGCGTGTGAAAGAGAAGGACCTTCGTTCCTCTTTTAGCTCTGGCAGTGTTAGTTCTCGTCGTCCAACCCTCACCAGTCAGTGCTCTTTGGGGGTTAGCATGGGCAATGCTGCACGAGCTAATGGCCGCTGGGGGAAGACGCGATTGTCTTCTGCCTCTGATAGTGATTCTTGCTGGACTGAGAGTGAGGCCGATGGTTCCAGTGTCAGTTCCCTGACCTTCGGTCGTCGTGTTTCCACAGAAATCTCTACAGATACTGTCATTCTCTCATCTGGATCAAGTGTTAGCAATGCTAGTGGGCAGAAATCTGAGAGGGCACACAAAGTTATAAGTGTACCAGTGCCGTCTATTACTTTTGAAACGGATGCAGCAGACGGGGAATCTCTGTCTGATGGGAAGGCTTTGCTTGGAGGGAACTAAAGAAATGATACTGCACTTCGTTTGATTCTAATTTCCTTAGTAGTAGAAACAGTAGTACTATTAATAGTAGTACTATTATTTTTGATTCTGAATATATAATCTTATATTTTTCTTCACTCTGCACGTTGTAAGtaaagccctggtcagatcacacaaAATTGTTGCGACTTCCTTGATGTAGGGTCTCGTGGGGATTCTAAATGACAAATAGGCGTTGTGACTCAAGATTTAACCGTTTCTCTTGCGTAATGTTGCATAGTTCACGACAACTGATACATGCCTGCAACGCCTTACAacacagaaagtctagcatgtttaattttttctcaTTCTTTATGACGAGTTCTGTCACGTAGATGACACTGCAATAAGACCACATCATTTCTTGTTTATATCAGTGGGTGCTGCCGTTAATGCGCCGataaggtaatcaaaaaatagACTGCATATTTACTTATGAGTGGGTCACGGGTGGATAAGATCAATCGTTATTGGTTATGCAAACGTTAActaccttttctaaaatattaaggtgttttaagcaattttatctgacaAACTGGCACAATTATGCAGACTTCTTCATTCTCACaacgagtttctgagttctctcatccttccaacaaactttgttcttccgaggtaatctggAAACATGTTTATCTGcgaatacattgtaaaagcatttcctgcttattcaaatttgtcattaacagtgaaaacagtttaatataggttTCTctaaaactgtgaatatttcactttaattttatttaggctagattattattttatttaacaaaccaacacaatatCACGGCAATTCATGTTTTGAAGCGCTTCACCTCagatgtcatttgttattcttgtttatagataactgaccgacaaaagattattaaaaacattaaaattatagcaaacgaaattagtttcaaaaagatttttttttcaagaaaaatatacaaattatatttttgtttgtgctcTCCACTACTCAACTATAcgggtggatgatttgtttcactctgaggaaaataaggatttaatgaaGGCTTTACTGTGATTGTATCACATATTTGCTAatggggtgtcacggtggcgcagtgggtagcacaatcgcctcacagcaagatggttacTGGTTTAAGCacccgctgggtcagttggcatttctgtgtggagtttgcatgttcctcctgtagtgtatatgtgtgtgaatgagagtgtatgggtgtttcccagtgattggttgcagctggaagggcatccgttgcgtaaaacatatgctggataatttggcggttcattccgctgtggtgacccctgattaataaaaaaatgtgtgattTGACCTGGGCTTATCTTGTAACTTGGTAGTTTTTTTTCAATTAGTGTAGGATTTTTCTTTCATCAAATgtataaatttgtttatttgtttctatGCAATAAAATCGGAATAATCTAGatgtatttcaaatatttaaaaattcttgtTTGTATTTCAATAGTTTGATTAATGTATGTAAATGTttgacataatatttatttaaataaaacagcacACAAATA

Function

symbol description
opn4.1 Enables photoreceptor activity. Acts upstream of or within light-induced release of internally sequestered calcium ion. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; heart; integument; testis; and visual system. Orthologous to human OPN4 (opsin 4).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0008377 light-induced release of internally sequestered calcium ion biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030314-2 Enables photoreceptor activity. Acts upstream of or within light-induced release of internally sequestered calcium ion. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; heart; integument; testis; and visual system. Orthologous to human OPN4 (opsin 4).

Ensembl:

ensembl_id ENSDARG00000007553

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031129 True 3192 mRNA 0.42 1 32843133 32846324

Neighbor

gene id symbol gene type direction distance location
XLOC_015580 pxdc1a coding upstream 4239 32835679 ~ 32838894 (+)
XLOC_015579 si:dkey-154p10.3 coding upstream 8692 32826235 ~ 32834441 (+)
XLOC_015578 ccr9a coding upstream 44050 32796873 ~ 32799083 (+)
XLOC_015577 zgc:136930 coding upstream 52246 32780138 ~ 32790887 (+)
XLOC_015576 BX323559.5 coding upstream 82801 32758663 ~ 32760332 (+)
XLOC_015582 tmem53 coding downstream 278 32846602 ~ 32850621 (+)
XLOC_015583 NA coding downstream 7877 32854201 ~ 32862149 (+)
XLOC_015584 NA coding downstream 20251 32866575 ~ 33029428 (+)
XLOC_015585 rnf220a coding downstream 205406 33051730 ~ 33216740 (+)
XLOC_015586 NA coding downstream 376638 33222962 ~ 33235257 (+)
XLOC_015574 BX323559.3 non-coding upstream 123159 32701820 ~ 32719974 (+)
XLOC_015573 NA non-coding upstream 195729 32644925 ~ 32647404 (+)
XLOC_015572 NA non-coding upstream 205628 32637080 ~ 32637505 (+)
XLOC_015571 BX323559.6 non-coding upstream 235106 32604847 ~ 32608027 (+)
XLOC_015590 NA non-coding downstream 620788 33467112 ~ 33468170 (+)
XLOC_015593 NA non-coding downstream 833749 33680073 ~ 33681136 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_12422242_12423747 OPN4.1 coding CI01000004 null 12422080 ~ 12424693 (+)