XLOC_015582 (tmem53)


Basic Information

Item Value
gene id XLOC_015582
gene name tmem53
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 32846602 ~ 32850621 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031130
TGTAAATCGTGACCCGGATGTTGTATGTAACAATGAGACGCTGATGTTGTCTTGTTCATTCGTGCAGTATTAtcgtgtgtgctgtgtgtgtctgtcctCTCAGCAGCGCAACCAGAGTGAAACACGACACTCATTTGAAGTGAATTATTAATGGCAGACAGACGATTGTGGAAATAATTGCCAATATGGGGGATGATGACTTAGACTACAACATAGTTTTTTCAGAGGCACTGATCTCAGAGAAACACTGGCGTGGATCGAAGGAGCCAGTCGTTATTCTGCTGGGCTGGGCGGGCAGCAGAGACAAGCACCTCGCCAAATACAGCTCTATTTACAACGAACAGGGTTGTACGACTCTACGCTACACGGCTCCTTTAAAGACGGTTTTTATTTCAGAATCATTGGGCTACAAGGAGCTAAGAAGCACTGCACACAAACTACTCGAACTTCTGTATGACTACGAGGTGGAAAACAACCCGATCTTCTTCCATGTGTTCAGCAACGGGGGCTTCATGCTTTACCGCTACATGGTTGAGTTGCTGCACAGTCACAAGCAGTTCAGCACTCTGTGTGTGGTGGGCACAGTTGTGGACAGTGCTCCGGGCAGCCAAAACGTCGTAGGGGCCCTCAGAGCACTCAAAACCACTTTAGGGCCCAAAGTGAACGTGCTACTGCAGTACTTCCTCCTGGCACTGTTTGCTGTTGCGGTTTTCCTCCTCAGGATTGTTTTGTATCCCTTGACCAAGTATTTTCACAGGAACCACTATGATGCTATGATGGAGCATCCAGCGCCGTGGCCTCAGATGTATCTCTATTCCAGAGCAGACCGCGTGATCCGCTACAGGGACGTGGAGAAGATGGTGAAAGGGTTGCAGGAGAAAGGGCTGATGGTTGAAAGTTTTGATTTCATCACCCCTGCACACGTGAGCCTGTTCAGAGACTGTCCCGAGGACTATTCTAATAGATGCAGGACGTTTCTGAGCCACTGCATGACTACTTCAGAGGAGATCTTGATGAAAAAGCATCACTAATTATGCAGTTCATGACTGGCTCATTAATATACTCGCTGTACACTTTTTTTATCGTGTACAAACTACCCTATTTGTGAAATAAAAGCACTGCTGTTTAATATAATCAACTTATCTCAAGCCGTACATGAGGTTTTTAACAGGGGTCTACAACAACTTATCTCCGAAGTATTTTTGTCTTATGCTGTGAAATGATTTGTAAATTAGGGAGTTGTTGATTTGTAACATTGAGATTTTTAGATATTGTGTACGAGTAATTTTTTGTTGTCTAGACAttgtgaatgaataaattaatatatttga

Function

symbol description
tmem53 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM53 (transmembrane protein 53).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-384 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM53 (transmembrane protein 53).

Ensembl:

ensembl_id ENSDARG00000038789

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031130 True 1331 mRNA 0.44 3 32846602 32850621

Neighbor

gene id symbol gene type direction distance location
XLOC_015581 opn4.1 coding upstream 278 32843133 ~ 32846324 (+)
XLOC_015580 pxdc1a coding upstream 7708 32835679 ~ 32838894 (+)
XLOC_015579 si:dkey-154p10.3 coding upstream 12161 32826235 ~ 32834441 (+)
XLOC_015578 ccr9a coding upstream 47519 32796873 ~ 32799083 (+)
XLOC_015577 zgc:136930 coding upstream 55715 32780138 ~ 32790887 (+)
XLOC_015583 NA coding downstream 3580 32854201 ~ 32862149 (+)
XLOC_015584 NA coding downstream 15954 32866575 ~ 33029428 (+)
XLOC_015585 rnf220a coding downstream 201109 33051730 ~ 33216740 (+)
XLOC_015586 NA coding downstream 372341 33222962 ~ 33235257 (+)
XLOC_015587 klf17 coding downstream 475901 33326522 ~ 33328688 (+)
XLOC_015576 BX323559.5 non-coding upstream 86270 32758663 ~ 32760332 (+)
XLOC_015574 BX323559.3 non-coding upstream 126628 32701820 ~ 32719974 (+)
XLOC_015573 NA non-coding upstream 199198 32644925 ~ 32647404 (+)
XLOC_015572 NA non-coding upstream 209097 32637080 ~ 32637505 (+)
XLOC_015571 BX323559.6 non-coding upstream 238575 32604847 ~ 32608027 (+)
XLOC_015590 NA non-coding downstream 616491 33467112 ~ 33468170 (+)
XLOC_015593 NA non-coding downstream 829452 33680073 ~ 33681136 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_12426409_12429382 TMEM53 coding CI01000004 null 12426409 ~ 12429470 (+)